Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020608

Physical Location & Seq

Genomic Coordinates Reverse (-)

48064188 .. 48064765

Gene Structure 578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGAGAGAAGGCGGAATTGCCAGTGGTCTTTGGATTTGCCTGATGCTTGGGCTCCGATGGGTCCCAAGGGGCCAATAAGAGAGGAGGCCGGGAAGGTTTTGACTGCTAATTTGAAGGGGAGGCCGGCGTTTAAGGCGGATGATCAGTCTGCATTGATATACTTGTTGCTGTCACAGAAGGATCTGTGGATGGAGAAGGTTTTTATGGAGAATTCGTATTACTTGCACAGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATAGAGAAGTATCATCCGGGTTTGGGGGATGAGAGGTGGCCGTTTGTGACCCATTTTGTGTGTTGCAAGCCTTGTGGGAGTTATGGGGATTATCCAGTGGAGAGGTGCTTGAGCAGCATGGAGATGGCTTTCAATTTTGCGGATAACCAGGTGCTTAAGCTTTACGGGTTGGTGGCTGGAGGTGGTGGTCTCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

154

Amino Acids

17.72

Weight (kDa)

6.3

Isoelectric Point (pI)

33.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	5 - 116	3e-16	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0199931
rosa_laevigata	RLG00000013356
rosa_multiflora	Rmu_sc0002748.1_g000006 Rmu_sc0008253.1_g000003
rosa_samantha	Rh1AG260000 Rh7DG185400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	13, 137, 407
AclWI	GGATC	2 cut(s)	189, 258
AcoI	YGGCCR	1 cut(s)	305
AcsI	RAATTY	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflII	CTTAAG	1 cut(s)	422
AgsI	TTSAA	2 cut(s)	115, 400
AjnI	CCWGG	1 cut(s)	414
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	1 cut(s)	461
AlwI	GGATC	2 cut(s)	189, 258
AoxI	GGCC	4 cut(s)	71, 87, 122, 305
ApeKI	GCWGC	1 cut(s)	381
ApoI	RAATTY	1 cut(s)	211
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	2 cut(s)	62, 71
AsuC2I	CCSGG	2 cut(s)	91, 285
AvaII	GGWCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	55
BbvI	GCAGC	1 cut(s)	393
BccI	CCATC	3 cut(s)	52, 184, 385
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	416
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	2 cut(s)	91, 285
BcoDI	GTCTC	1 cut(s)	461
BfrI	CTTAAG	1 cut(s)	422
BisI	GCNGC	1 cut(s)	382
BlsI	GCNGC	1 cut(s)	383
Bme1390I	CCNGG	3 cut(s)	91, 285, 416
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	62, 71
BmiI	GGNNCC	4 cut(s)	54, 63, 64, 72
BmrFI	CCNGG	3 cut(s)	91, 285, 416
BmsI	GCATC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	465
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	91, 285
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	22, 362
BseBI	CCWGG	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	66
BseGI	GGATG	4 cut(s)	145, 195, 280, 301
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	2 cut(s)	22, 362
BseRI	GAGGAG	2 cut(s)	98, 275
BseXI	GCAGC	1 cut(s)	393
BshFI	GGCC	4 cut(s)	73, 89, 124, 307
BsiSI	CCGG	4 cut(s)	90, 125, 284, 460
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	461
BsmFI	GGGAC	1 cut(s)	48
BsnI	GGCC	4 cut(s)	73, 89, 124, 307
Bso31I	GGTCTC	1 cut(s)	461
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	3 cut(s)	142, 181, 250
BspACI	CCGC	3 cut(s)	13, 137, 407
BspANI	GGCC	4 cut(s)	73, 89, 124, 307
BspLI	GGNNCC	4 cut(s)	54, 63, 64, 72
BspPI	GGATC	2 cut(s)	189, 258
BspTI	CTTAAG	1 cut(s)	422
BspTNI	GGTCTC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	22, 362
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	1 cut(s)	66
BssMI	GATC	3 cut(s)	142, 181, 250
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	416
BstAFI	CTTAAG	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	126, 335
BstF5I	GGATG	4 cut(s)	145, 195, 280, 301
BstKTI	GATC	3 cut(s)	145, 184, 253
BstMAI	GTCTC	1 cut(s)	461
BstMBI	GATC	3 cut(s)	142, 181, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 381
BstNI	CCWGG	1 cut(s)	416
BstSCI	CCNGG	3 cut(s)	89, 283, 414
BstV1I	GCAGC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	181
BstYI	RGATCY	1 cut(s)	181
BsuRI	GGCC	4 cut(s)	73, 89, 124, 307
BtsCI	GGATG	4 cut(s)	145, 195, 280, 301
BtsIMutI	CAGTG	2 cut(s)	29, 369
Cac8I	GCNNGC	2 cut(s)	126, 335
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	62, 71
CsiI	ACCWGGT	1 cut(s)	414
CspCI	CAANNNNNGTGG	2 cut(s)	322, 357
CviAII	CATG	1 cut(s)	385
DpnI	GATC	3 cut(s)	144, 183, 252
DpnII	GATC	3 cut(s)	142, 181, 250
EaeI	YGGCCR	1 cut(s)	305
EciI	GGCGGA	2 cut(s)	28, 152
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	55
Eco31I	GGTCTC	1 cut(s)	461
Eco47I	GGWCC	1 cut(s)	62
EcoO109I	RGGNCCY	1 cut(s)	62
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	1 cut(s)	388
FaiI	YATR	5 cut(s)	160, 206, 258, 351, 386
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	384
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	1 cut(s)	382
FokI	GGATG	4 cut(s)	152, 202, 267, 308
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	382
GluI	GCNGC	1 cut(s)	382
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	4 cut(s)	73, 89, 124, 307
HapII	CCGG	4 cut(s)	90, 125, 284, 460
Hin1II	CATG	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	425
HpaII	CCGG	4 cut(s)	90, 125, 284, 460
Hpy188I	TCNGA	1 cut(s)	57
HpyAV	CCTTC	5 cut(s)	3, 88, 109, 172, 190
HpyCH4V	TGCA	3 cut(s)	152, 226, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 381
Hsp92II	CATG	1 cut(s)	388
KflI	GGGWCCC	1 cut(s)	62
KroI	GCCGGC	1 cut(s)	124
KroNI	GCCGGC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	3 cut(s)	142, 181, 250
LmnI	GCTCC	1 cut(s)	58
Lsp1109I	GCAGC	1 cut(s)	393
LweI	GCATC	1 cut(s)	34
MabI	ACCWGGT	1 cut(s)	414
MaeIII	GTNAC	2 cut(s)	171, 313
MalI	GATC	3 cut(s)	144, 183, 252
MboI	GATC	3 cut(s)	142, 181, 250
MflI	RGATCY	1 cut(s)	181
MhlI	GDGCHC	1 cut(s)	55
MluCI	AATT	4 cut(s)	16, 109, 211, 400
MnlI	CCTC	7 cut(s)	76, 79, 114, 253, 294, 363, 440
MroNI	GCCGGC	1 cut(s)	124
MseI	TTAA	2 cut(s)	132, 423
MslI	CAYNNNNRTG	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	4 cut(s)	90, 125, 284, 460
MspR9I	CCNGG	3 cut(s)	91, 285, 416
MvaI	CCWGG	1 cut(s)	416
MwoI	GCNNNNNNNGC	2 cut(s)	134, 381
NaeI	GCCGGC	1 cut(s)	126
NciI	CCSGG	2 cut(s)	91, 285
NdeII	GATC	3 cut(s)	142, 181, 250
NgoMIV	GCCGGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	4 cut(s)	54, 63, 64, 72
NmuCI	GTSAC	2 cut(s)	171, 313
PdiI	GCCGGC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	383
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	414
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	4 cut(s)	54, 63, 64, 72
PspPI	GGNCC	2 cut(s)	62, 71
PspPPI	RGGWCCY	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	2 cut(s)	132, 423
SatI	GCNGC	1 cut(s)	382
Sau3AI	GATC	3 cut(s)	142, 181, 250
Sau96I	GGNCC	2 cut(s)	62, 71
ScrFI	CCNGG	3 cut(s)	91, 285, 416
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	7 cut(s)	99, 201, 305, 374, 420, 429, 451
SexAI	ACCWGGT	1 cut(s)	414
SfaNI	GCATC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	389
SmlI	CTYRAG	2 cut(s)	376, 422
SmoI	CTYRAG	2 cut(s)	376, 422
Sse9I	AATT	4 cut(s)	16, 109, 211, 400
SsiI	CCGC	3 cut(s)	13, 137, 407
StyD4I	CCNGG	3 cut(s)	89, 283, 414
StyI	CCWWGG	1 cut(s)	66
TasI	AATT	4 cut(s)	16, 109, 211, 400
Tru1I	TTAA	2 cut(s)	132, 423
Tru9I	TTAA	2 cut(s)	132, 423
TscAI	CASTG	2 cut(s)	29, 369
TseFI	GTSAC	2 cut(s)	171, 313
TseI	GCWGC	1 cut(s)	381
Tsp45I	GTSAC	2 cut(s)	171, 313
TspRI	CASTG	2 cut(s)	29, 369
Vha464I	CTTAAG	1 cut(s)	422
VpaK11BI	GGWCC	1 cut(s)	62
XapI	RAATTY	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.