Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0020608

Physical Location & Seq

Genomic Coordinates Forward (+)

17249623 .. 17250174

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG185400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGTCCCAAGGGGCCGATAAGAGAGGAGGCCGGGAAGGTTTTGACTGTGAATTTGAAGGGGAGGCCGGCGTTTGAGGTGGATGATCAGTCTACATTGATATACTTGTTGTTGTTGCAGAAGGATCTGTGGATGGAGAAGGTTTTTGTGGAGAATTTGTATTACTTGCACGGATATTGGGCTGGATTGGTGGATCGGTATGAGGAGATGATAGAGAAATATCATCCGGGTTATTTGGGGGATGAGAGGCGGTCGTTTGTGACCCATTTTGTGGGTTGCAAGCCTTGTGGGAGTTATGGGGATTATCCAGTGGAGAGGTGCTTAAGCAGCATAGAGATGGATTTCAATTTTGTGGATAACCAGGTGCTTAAGCTTTACAGGTTGGTGGCTGGAGGTGGTGGTCTCTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

136

Amino Acids

15.66

Weight (kDa)

5.36

Isoelectric Point (pI)

30.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_34	PF05637	16 - 98	1.5e-11	galactosyl transferase GMA12/MNN10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0020608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0199931
rosa_laevigata	RLG00000013356
rosa_multiflora	Rmu_sc0002748.1_g000006 Rmu_sc0008253.1_g000003
rosa_samantha	Rh1AG260000 Rh7DG185400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AccI	GTMKAC	1 cut(s)	92
AciI	CCGC	1 cut(s)	250
AclWI	GGATC	2 cut(s)	132, 201
AcsI	RAATTY	2 cut(s)	52, 154
AfiI	CCNNNNNNNGG	1 cut(s)	271
AflII	CTTAAG	2 cut(s)	322, 368
AgsI	TTSAA	2 cut(s)	58, 346
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	1 cut(s)	373
AluI	AGCT	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	2 cut(s)	132, 201
AoxI	GGCC	3 cut(s)	14, 30, 65
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	2 cut(s)	52, 154
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspS9I	GGNCC	2 cut(s)	5, 14
AsuC2I	CCSGG	2 cut(s)	34, 228
AvaII	GGWCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	339
BccI	CCATC	2 cut(s)	127, 331
BciT130I	CCWGG	1 cut(s)	362
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	2 cut(s)	34, 228
BcoDI	GTCTC	1 cut(s)	407
BfrI	CTTAAG	2 cut(s)	322, 368
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	3 cut(s)	34, 228, 362
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 14
BmiI	GGNNCC	3 cut(s)	6, 7, 15
BmrFI	CCNGG	3 cut(s)	34, 228, 362
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	2 cut(s)	34, 228
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
Bse118I	RCCGGY	1 cut(s)	67
Bse1I	ACTGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	4 cut(s)	88, 138, 223, 247
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	41, 218
BseXI	GCAGC	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	3 cut(s)	16, 32, 67
BsiEI	CGRYCG	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	33, 68, 227
BslI	CCNNNNNNNGG	1 cut(s)	271
BsmAI	GTCTC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	16, 32, 67
Bso31I	GGTCTC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	85, 124, 193
BspACI	CCGC	1 cut(s)	250
BspANI	GGCC	3 cut(s)	16, 32, 67
BspLI	GGNNCC	3 cut(s)	6, 7, 15
BspPI	GGATC	2 cut(s)	132, 201
BspTI	CTTAAG	2 cut(s)	322, 368
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	1 cut(s)	67
BsrI	ACTGG	1 cut(s)	308
BssAI	RCCGGY	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	3 cut(s)	85, 124, 193
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	49
BstAFI	CTTAAG	2 cut(s)	322, 368
BstC8I	GCNNGC	2 cut(s)	69, 281
BstF5I	GGATG	4 cut(s)	88, 138, 223, 247
BstKTI	GATC	3 cut(s)	88, 127, 196
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	3 cut(s)	85, 124, 193
BstMCI	CGRYCG	1 cut(s)	254
BstMWI	GCNNNNNNNGC	1 cut(s)	327
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	3 cut(s)	32, 226, 360
BstV1I	GCAGC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	16, 32, 67
BtsCI	GGATG	4 cut(s)	88, 138, 223, 247
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	69, 281
Cfr10I	RCCGGY	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	5, 14
CsiI	ACCWGGT	1 cut(s)	360
CspCI	CAANNNNNGTGG	2 cut(s)	268, 303
CviJI	RGCY	7 cut(s)	16, 32, 67, 182, 283, 373, 389
CviKI_1	RGCY	7 cut(s)	16, 32, 67, 182, 283, 373, 389
DpnI	GATC	3 cut(s)	87, 126, 195
DpnII	GATC	3 cut(s)	85, 124, 193
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	360
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaiI	YATR	4 cut(s)	103, 201, 297, 332
FbaI	TGATCA	1 cut(s)	85
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	1 cut(s)	328
FokI	GGATG	4 cut(s)	95, 145, 210, 254
Fsp4HI	GCNGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	328
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	16, 32, 67
HapII	CCGG	3 cut(s)	33, 68, 227
HindIII	AAGCTT	1 cut(s)	371
HpaII	CCGG	3 cut(s)	33, 68, 227
Hpy166II	GTNNAC	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	93
HpyAV	CCTTC	4 cut(s)	31, 52, 115, 133
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	3 cut(s)	118, 169, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	327
KflI	GGGWCCC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	67
KroNI	GCCGGC	1 cut(s)	69
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	85, 124, 193
Lsp1109I	GCAGC	1 cut(s)	339
MabI	ACCWGGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	3 cut(s)	87, 126, 195
MboI	GATC	3 cut(s)	85, 124, 193
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	3 cut(s)	52, 154, 346
MnlI	CCTC	8 cut(s)	19, 22, 57, 70, 196, 240, 309, 386
MroNI	GCCGGC	1 cut(s)	67
MseI	TTAA	2 cut(s)	323, 369
MslI	CAYNNNNRTG	1 cut(s)	335
MspCI	CTTAAG	2 cut(s)	322, 368
MspI	CCGG	3 cut(s)	33, 68, 227
MspR9I	CCNGG	3 cut(s)	34, 228, 362
MvaI	CCWGG	1 cut(s)	362
MwoI	GCNNNNNNNGC	1 cut(s)	327
NaeI	GCCGGC	1 cut(s)	69
NciI	CCSGG	2 cut(s)	34, 228
NdeII	GATC	3 cut(s)	85, 124, 193
NgoMIV	GCCGGC	1 cut(s)	67
NlaIV	GGNNCC	3 cut(s)	6, 7, 15
NmuCI	GTSAC	1 cut(s)	259
PdiI	GCCGGC	1 cut(s)	69
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PspN4I	GGNNCC	3 cut(s)	6, 7, 15
PspPI	GGNCC	2 cut(s)	5, 14
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	323, 369
SatI	GCNGC	1 cut(s)	328
Sau3AI	GATC	3 cut(s)	85, 124, 193
Sau96I	GGNCC	2 cut(s)	5, 14
ScrFI	CCNGG	3 cut(s)	34, 228, 362
SetI	ASST	8 cut(s)	42, 81, 144, 320, 366, 375, 383, 397
SexAI	ACCWGGT	1 cut(s)	360
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	322, 368
SmoI	CTYRAG	2 cut(s)	322, 368
Sse9I	AATT	3 cut(s)	52, 154, 346
SsiI	CCGC	1 cut(s)	250
StyD4I	CCNGG	3 cut(s)	32, 226, 360
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	49
TasI	AATT	3 cut(s)	52, 154, 346
Tru1I	TTAA	2 cut(s)	323, 369
Tru9I	TTAA	2 cut(s)	323, 369
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	259
TspGWI	ACGGA	1 cut(s)	186
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	271
Vha464I	CTTAAG	2 cut(s)	322, 368
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	2 cut(s)	52, 154
XmiI	GTMKAC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.