Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0020608

Physical Location & Seq

Genomic Coordinates Reverse (-)

18179 .. 18589

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atgggtcccaaggggccgataagagaggaggccgggaaggttttgacggcgaatttgaaggggacgctggcgtttgaggcagatgatcagtctgcattgatatactttttgctgttgcagaaggatctatggatggagaaggagatgatagagaagtatcatctgggttatttgggggatgagaggtggccgtttgtgacccattttgtgggttgcaagccttgtgggagttatggggattatccggtggagtggtgcttgagcagcatggagatggatttcaattttgcggataaccaggtgcttaagctttacaggttggtggctggaggtggtggtctccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005975 GO:0005976 GO:0006073 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009058 GO:0009059 GO:0009250 GO:0009653 GO:0009888 GO:0009969 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010383 GO:0010410 GO:0010411 GO:0012505 GO:0016020 GO:0016049 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016763 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0033692 GO:0033843 GO:0034637 GO:0034645 GO:0035252 GO:0040007 GO:0042285 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0060560 GO:0071554 GO:0071695 GO:0071704 GO:0080147 GO:0090558 GO:0090627 GO:0097708 GO:0098588 GO:0098791 GO:0099402 GO:1901576 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_34

Protein Analysis

115

Amino Acids

13.03

Weight (kDa)

5.1

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020608)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0199931
rosa_laevigata	RLG00000013356
rosa_multiflora	Rmu_sc0002748.1_g000006 Rmu_sc0008253.1_g000003
rosa_samantha	Rh1AG260000 Rh7DG185400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	305
AgsI	TTSAA	2 cut(s)	58, 283
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	132
AoxI	GGCC	3 cut(s)	14, 30, 188
ApeKI	GCWGC	1 cut(s)	264
ApoI	RAATTY	1 cut(s)	52
ArsI	GACNNNNNNTTYG	2 cut(s)	37, 69
AspS9I	GGNCC	2 cut(s)	5, 14
AsuC2I	CCSGG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	276
BccI	CCATC	2 cut(s)	127, 268
BceAI	ACGGC	2 cut(s)	63, 175
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	1 cut(s)	85
BcnI	CCSGG	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	344
BfrI	CTTAAG	1 cut(s)	305
BisI	GCNGC	1 cut(s)	265
BlsI	GCNGC	1 cut(s)	266
Bme1390I	CCNGG	2 cut(s)	34, 299
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 14
BmiI	GGNNCC	3 cut(s)	6, 7, 15
BmrFI	CCNGG	2 cut(s)	34, 299
BpmI	CTGGAG	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	280
BpuMI	CCSGG	1 cut(s)	34
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	9
BsaWI	WCCGGW	2 cut(s)	244, 342
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	299
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	138, 184
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseRI	GAGGAG	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	276
BshFI	GGCC	3 cut(s)	16, 32, 190
BsiSI	CCGG	3 cut(s)	33, 245, 343
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	76
BsnI	GGCC	3 cut(s)	16, 32, 190
Bso31I	GGTCTC	1 cut(s)	344
Bsp143I	GATC	2 cut(s)	85, 124
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	3 cut(s)	16, 32, 190
BspLI	GGNNCC	3 cut(s)	6, 7, 15
BspPI	GGATC	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	2 cut(s)	85, 124
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	299
BstAFI	CTTAAG	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	69, 218
BstF5I	GGATG	2 cut(s)	138, 184
BstKTI	GATC	2 cut(s)	88, 127
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	85, 124
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 264
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	2 cut(s)	32, 297
BstV1I	GCAGC	1 cut(s)	276
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	16, 32, 190
BtsCI	GGATG	2 cut(s)	138, 184
Cac8I	GCNNGC	2 cut(s)	69, 218
Cfr13I	GGNCC	2 cut(s)	5, 14
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	297
CspCI	CAANNNNNGTGG	2 cut(s)	205, 240
CviAII	CATG	1 cut(s)	268
CviJI	RGCY	6 cut(s)	16, 32, 190, 220, 310, 326
CviKI_1	RGCY	6 cut(s)	16, 32, 190, 220, 310, 326
DpnI	GATC	2 cut(s)	87, 126
DpnII	GATC	2 cut(s)	85, 124
EaeI	YGGCCR	1 cut(s)	188
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	297
EcoT14I	CCWWGG	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	271
FaiI	YATR	4 cut(s)	103, 130, 234, 269
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	1 cut(s)	265
FokI	GGATG	2 cut(s)	145, 191
Fsp4HI	GCNGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	265
GsuI	CTGGAG	1 cut(s)	348
HaeIII	GGCC	3 cut(s)	16, 32, 190
HapII	CCGG	3 cut(s)	33, 245, 343
HgaI	GACGC	1 cut(s)	73
Hin1II	CATG	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	308
HpaII	CCGG	3 cut(s)	33, 245, 343
HpyAV	CCTTC	4 cut(s)	31, 52, 115, 133
HpyCH4V	TGCA	3 cut(s)	95, 118, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 264
Hsp92II	CATG	1 cut(s)	271
KflI	GGGWCCC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	85, 124
LpnPI	CCDG	8 cut(s)	46, 53, 149, 258, 284, 301, 311, 312
Lsp1109I	GCAGC	1 cut(s)	276
MabI	ACCWGGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	87, 126
MboI	GATC	2 cut(s)	85, 124
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	2 cut(s)	52, 283
MnlI	CCTC	5 cut(s)	19, 22, 70, 177, 323
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	1 cut(s)	272
MspCI	CTTAAG	1 cut(s)	305
MspI	CCGG	3 cut(s)	33, 245, 343
MspR9I	CCNGG	2 cut(s)	34, 299
MvaI	CCWGG	1 cut(s)	299
MwoI	GCNNNNNNNGC	2 cut(s)	77, 264
NciI	CCSGG	1 cut(s)	34
NdeII	GATC	2 cut(s)	85, 124
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	3 cut(s)	6, 7, 15
NmuCI	GTSAC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	266
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	297
PspN4I	GGNNCC	3 cut(s)	6, 7, 15
PspPI	GGNCC	2 cut(s)	5, 14
PspPPI	RGGWCCY	1 cut(s)	5
PsuI	RGATCY	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	1 cut(s)	265
Sau3AI	GATC	2 cut(s)	85, 124
Sau96I	GGNCC	2 cut(s)	5, 14
ScrFI	CCNGG	2 cut(s)	34, 299
SetI	ASST	6 cut(s)	42, 188, 303, 312, 320, 334
SexAI	ACCWGGT	1 cut(s)	297
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	259, 305
SmoI	CTYRAG	2 cut(s)	259, 305
Sse9I	AATT	2 cut(s)	52, 283
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	32, 297
StyI	CCWWGG	1 cut(s)	9
TasI	AATT	2 cut(s)	52, 283
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	264
Tsp45I	GTSAC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	5
XapI	RAATTY	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.