RLG00000013374

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0021549
Physical Location & Seq
Reverse (-)
30536054 .. 30536555
502 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013374

Sequence Viewer

Length: 399 bp
ATGGCGGACGACCAATCATTTCCAAAGGAGAAGAGCATCTACATAAGCAATCAAGCCTCCTCTTTATCCTCGTCGGCATTCTCATCGGCTCCACCTTCTTCATCCTCCAGGCCACTCTCTCCTGCCTCTCCCATTCCAAGCCCAATCCCTCCATCCCCCGATCCTTCACCTCCGTCCACGACCGAATCAACACCGCCTCCTTCTCCACGCTGTGATTATCTGAATAAGAAGAAGAAGAAGAAGAACTGGGTCAAGTTCTGGAAGACTCGGGTCGAGGCGTTGAAGAGGCTTGAAGAGAGGCTGCGGGCGGTCGGGTCGATGAATTCAGACCACAACTGGTGCGCTGCCATCGTCGATTGGCCGGCTTCCTTGAACCGGGTCACGATTCCAAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.52

Weight (kDa)

9.78

Isoelectric Point (pI)

73.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021549)

Species Orthologous Gene IDs
rosa_laevigata RLG00000013374
rosa_multiflora Rmu_sc0000202.1_g000030 Rmu_sc0006139.1_g000003
rosa_samantha Rh1BG394400 Rh6DG250700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 5, 194, 304, 308
AclWI GGATC 1 cut(s) 155
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 375
AgsI TTSAA 3 cut(s) 283, 293, 373
AjnI CCWGG 1 cut(s) 107
AlwI GGATC 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 267
AoxI GGCC 2 cut(s) 110, 359
ApeKI GCWGC 2 cut(s) 301, 344
ApoI RAATTY 1 cut(s) 322
AspLEI GCGC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 377
AsuHPI GGTGA 1 cut(s) 159
AvaI CYCGRG 1 cut(s) 267
BarI GAAGNNNNNNTAC 2 cut(s) 23, 55
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 2 cut(s) 288, 331
BccI CCATC 2 cut(s) 160, 356
BcgI CGANNNNNNTGC 2 cut(s) 66, 100
BciT130I CCWGG 1 cut(s) 109
BcnI CCSGG 1 cut(s) 377
BisI GCNGC 2 cut(s) 302, 345
BlsI GCNGC 2 cut(s) 303, 346
Bme1390I CCNGG 2 cut(s) 109, 377
BmeT110I CYCGRG 1 cut(s) 267
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 2 cut(s) 109, 377
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 1 cut(s) 45
BmuI ACTGGG 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 269
BpiI GAAGAC 1 cut(s) 269
BpmI CTGGAG 1 cut(s) 91
BpuMI CCSGG 1 cut(s) 377
BsaXI ACNNNNNCTCC 2 cut(s) 181, 211
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 251, 341
BseBI CCWGG 1 cut(s) 109
BseGI GGATG 2 cut(s) 101, 152
BseLI CCNNNNNNNGG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 251, 341
BseRI GAGGAG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 288, 331
Bsh1285I CGRYCG 2 cut(s) 183, 312
BshFI GGCC 2 cut(s) 112, 361
BsiEI CGRYCG 2 cut(s) 183, 312
BsiHKCI CYCGRG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 362, 376
BslI CCNNNNNNNGG 1 cut(s) 375
BsmI GAATGC 1 cut(s) 77
BsnI GGCC 2 cut(s) 112, 361
BsoBI CYCGRG 1 cut(s) 267
Bsp143I GATC 1 cut(s) 160
BspACI CCGC 4 cut(s) 5, 194, 304, 308
BspANI GGCC 2 cut(s) 112, 361
BspLI GGNNCC 1 cut(s) 90
BspPI GGATC 1 cut(s) 155
BspQI GCTCTTC 1 cut(s) 26
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 251, 341
BssAI RCCGGY 1 cut(s) 361
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 109
Bst6I CTCTTC 3 cut(s) 26, 278, 288
BstC8I GCNNGC 2 cut(s) 306, 363
BstF5I GGATG 2 cut(s) 101, 152
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 163
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 2 cut(s) 183, 312
BstNI CCWGG 1 cut(s) 109
BstPAI GACNNNNGTC 1 cut(s) 269
BstSCI CCNGG 2 cut(s) 107, 375
BstV1I GCAGC 2 cut(s) 288, 331
BstV2I GAAGAC 1 cut(s) 269
BsuRI GGCC 2 cut(s) 112, 361
BtsCI GGATG 2 cut(s) 101, 152
Cac8I GCNNGC 2 cut(s) 306, 363
CfoI GCGC 1 cut(s) 344
Cfr10I RCCGGY 1 cut(s) 361
CviJI RGCY 8 cut(s) 56, 89, 112, 141, 289, 301, 361, 365
CviKI_1 RGCY 8 cut(s) 56, 89, 112, 141, 289, 301, 361, 365
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraIII CACNNNGTG 1 cut(s) 212
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 3 cut(s) 26, 278, 288
EarI CTCTTC 3 cut(s) 26, 278, 288
EciI GGCGGA 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 107
FaiI YATR 1 cut(s) 44
FauI CCCGC 1 cut(s) 297
Fnu4HI GCNGC 2 cut(s) 302, 345
FokI GGATG 2 cut(s) 88, 139
Fsp4HI GCNGC 2 cut(s) 302, 345
GlaI GCGC 1 cut(s) 343
GluI GCNGC 2 cut(s) 302, 345
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 2 cut(s) 112, 361
HapII CCGG 2 cut(s) 362, 376
HhaI GCGC 1 cut(s) 344
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 3 cut(s) 185, 265, 385
HpaII CCGG 2 cut(s) 362, 376
HphI GGTGA 1 cut(s) 159
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 2 cut(s) 222, 328
Hpy188III TCNNGA 2 cut(s) 259, 382
Hpy8I GTNNAC 1 cut(s) 177
Hpy99I CGWCG 2 cut(s) 76, 356
HpyAV CCTTC 3 cut(s) 105, 174, 210
HspAI GCGC 1 cut(s) 342
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 8 cut(s) 94, 121, 135, 232, 244, 322, 375, 389
Lsp1109I GCAGC 2 cut(s) 288, 331
LweI GCATC 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 379
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MluCI AATT 1 cut(s) 322
MlyI GAGTC 1 cut(s) 259
MroNI GCCGGC 1 cut(s) 361
MspI CCGG 2 cut(s) 362, 376
MspR9I CCNGG 2 cut(s) 109, 377
Mva1269I GAATGC 1 cut(s) 77
MvaI CCWGG 1 cut(s) 109
NaeI GCCGGC 1 cut(s) 363
NciI CCSGG 1 cut(s) 377
NdeII GATC 1 cut(s) 160
NgoMIV GCCGGC 1 cut(s) 361
NlaIV GGNNCC 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 379
PciSI GCTCTTC 1 cut(s) 26
PctI GAATGC 1 cut(s) 77
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 2 cut(s) 185, 385
PkrI GCNGC 2 cut(s) 303, 346
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PshAI GACNNNNGTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 107
PspGI CCWGG 1 cut(s) 107
PspN4I GGNNCC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 26
SatI GCNGC 2 cut(s) 302, 345
Sau3AI GATC 1 cut(s) 160
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 109, 377
SetI ASST 2 cut(s) 97, 172
SfaNI GCATC 1 cut(s) 45
Sse9I AATT 1 cut(s) 322
SsiI CCGC 4 cut(s) 5, 194, 304, 308
StyD4I CCNGG 2 cut(s) 107, 375
TaqI TCGA 3 cut(s) 273, 317, 354
TaqII GACCGA 1 cut(s) 197
TasI AATT 1 cut(s) 322
TfiI GAWTC 2 cut(s) 185, 385
TseFI GTSAC 1 cut(s) 379
TseI GCWGC 2 cut(s) 301, 344
Tsp45I GTSAC 1 cut(s) 379
TspDTI ATGAA 2 cut(s) 90, 335
TspGWI ACGGA 1 cut(s) 162
XapI RAATTY 1 cut(s) 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.