Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006139.1

Orthogroup ID

OG0021549

Physical Location & Seq

Genomic Coordinates Forward (+)

3076 .. 3432

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006139.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgaaacagctacacaagcaatcgagcctcctctttatccttgttgtcattctcatcggctccaccttctttatcctccagcccactctctcctgtctctccccttctgagcccaatccctccatcccccgatccttctcctccgtccacgaccgaattaacaccacttccttctccaccgacctccgcaacaatgccgacaaggttcccgtcggcctcggcaaggcatgtgattatctgaataagaagaagaagaaaaagaacctggtcaagttccagaagacttgggtcgaggcgtcgaagaggcttgaaagaaggctaagggcggtcgggtcggtgaatttggaccatagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

118

Amino Acids

13.31

Weight (kDa)

10.25

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021549)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013374
rosa_multiflora	Rmu_sc0000202.1_g000030 Rmu_sc0006139.1_g000003
rosa_samantha	Rh1BG394400 Rh6DG250700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	187, 326
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	311
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	2 cut(s)	10, 354
AluI	AGCT	2 cut(s)	10, 354
Alw26I	GTCTC	1 cut(s)	101
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	1 cut(s)	349
AvaII	GGWCC	1 cut(s)	346
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	287
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	101
BfaI	CTAG	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	61, 207
BmrFI	CCNGG	1 cut(s)	266
BoxI	GACNNNNGTC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	287
BpmI	CTGGAG	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	320
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	2 cut(s)	20, 130
Bsh1285I	CGRYCG	2 cut(s)	154, 330
BshFI	GGCC	1 cut(s)	216
BsiEI	CGRYCG	2 cut(s)	154, 330
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	101
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	187, 326
BspANI	GGCC	1 cut(s)	216
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	61, 207
BspPI	GGATC	1 cut(s)	126
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	296
Bst2UI	CCWGG	1 cut(s)	266
Bst6I	CTCTTC	1 cut(s)	296
BstACI	GRCGYC	1 cut(s)	296
BstDEI	CTNAG	2 cut(s)	108, 320
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	1 cut(s)	123
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	101
BstMBI	GATC	1 cut(s)	131
BstMCI	CGRYCG	2 cut(s)	154, 330
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	231
BstPAI	GACNNNNGTC	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	264
BstV2I	GAAGAC	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	123
Cfr13I	GGNCC	1 cut(s)	346
CseI	GACGC	1 cut(s)	285
CsiI	ACCWGGT	1 cut(s)	264
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	9 cut(s)	10, 27, 60, 82, 112, 216, 307, 319, 354
CviKI_1	RGCY	9 cut(s)	10, 27, 60, 82, 112, 216, 307, 319, 354
DdeI	CTNAG	2 cut(s)	108, 320
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	346
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	114
FaeI	CATG	1 cut(s)	231
FaiI	YATR	2 cut(s)	229, 351
FatI	CATG	1 cut(s)	227
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	355
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	216
HgaI	GACGC	1 cut(s)	285
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	231
HphI	GGTGA	1 cut(s)	349
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	2 cut(s)	109, 240
Hpy188III	TCNNGA	1 cut(s)	277
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	215, 301
HpyAV	CCTTC	5 cut(s)	76, 114, 145, 181, 309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	2 cut(s)	108, 320
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	92, 106, 251, 278, 290
MabI	ACCWGGT	1 cut(s)	264
MaeI	CTAG	1 cut(s)	355
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	5 cut(s)	259, 262, 265, 292, 313
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	156, 340
MnlI	CCTC	9 cut(s)	38, 41, 86, 130, 151, 194, 227, 286, 297
MseI	TTAA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	266
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	131
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	2 cut(s)	61, 207
NmeAIII	GCCGAG	1 cut(s)	198
NspI	RCATGY	1 cut(s)	231
PshAI	GACNNNNGTC	1 cut(s)	287
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	61, 207
PspPI	GGNCC	1 cut(s)	346
SaqAI	TTAA	1 cut(s)	159
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	12, 68, 186, 207, 267, 356
SexAI	ACCWGGT	1 cut(s)	264
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	2 cut(s)	156, 340
SsiI	CCGC	2 cut(s)	187, 326
SspMI	CTAG	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	264
TaqI	TCGA	3 cut(s)	23, 291, 299
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	156, 340
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	133
VpaK11BI	GGWCC	1 cut(s)	346
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.