Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0021549

Physical Location & Seq

Genomic Coordinates Reverse (-)

51955190 .. 51956441

Gene Structure 1252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG394400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAACAGCTACACAAGCAATTGGGCCTCCTCTTTATCCTTGTCAGCATTCTCATCGGCTCCACCTTCTTCATCTTCCAGCCCACTCTCTCCTGCCTCTCCCCTTCCGAGCCCATTCCCTCCATCCCCCGATCCTTCTCCTCCATCCACGACCGAATCAACACCGCCTCCTTCTCCACCGACCTCTGCAACAATGCCGGCAAGGTTCCCGCCGGCCTTGGCAAGGCATGTGATTATCTGAATAAGAAGAAGAAGAAGAACCAGGTCAAGTTCTGGAAGACTTGGGTCGAGGCGTCGAAGAGGCTTGAAGGGAGGCTGAGGGCAGTCGGGTTGGTGAATTTGGACCACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

117

Amino Acids

13.04

Weight (kDa)

9.97

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021549)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013374
rosa_multiflora	Rmu_sc0000202.1_g000030 Rmu_sc0006139.1_g000003
rosa_samantha	Rh1BG394400 Rh6DG250700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	165, 210
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	2 cut(s)	10, 351
AluI	AGCT	2 cut(s)	10, 351
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	2 cut(s)	25, 214
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	2 cut(s)	25, 343
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	317
BccI	CCATC	2 cut(s)	131, 152
BcgI	CGANNNNNNTGC	2 cut(s)	37, 71
BciT130I	CCWGG	1 cut(s)	263
BfaI	CTAG	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	25, 343
BmiI	GGNNCC	2 cut(s)	61, 207
BmrFI	CCNGG	1 cut(s)	263
BoxI	GACNNNNGTC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	317
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	2 cut(s)	197, 212
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	123, 144
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	308
BseRI	GAGGAG	2 cut(s)	20, 130
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	27, 216
BsiEI	CGRYCG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	198, 213
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	27, 216
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	165, 210
BspANI	GGCC	2 cut(s)	27, 216
BspCNI	CTCAG	1 cut(s)	309
BspLI	GGNNCC	2 cut(s)	61, 207
BspPI	GGATC	1 cut(s)	126
BsrFI	RCCGGY	2 cut(s)	197, 212
BssAI	RCCGGY	2 cut(s)	197, 212
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	263
Bst6I	CTCTTC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	199, 214
BstDEI	CTNAG	1 cut(s)	317
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	123, 144
BstKTI	GATC	1 cut(s)	134
BstMBI	GATC	1 cut(s)	131
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	231
BstPAI	GACNNNNGTC	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	27, 216
BtsCI	GGATG	2 cut(s)	123, 144
Cac8I	GCNNGC	2 cut(s)	199, 214
Cfr10I	RCCGGY	2 cut(s)	197, 212
Cfr13I	GGNCC	2 cut(s)	25, 343
CseI	GACGC	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	261
CviAII	CATG	1 cut(s)	228
CviJI	RGCY	9 cut(s)	10, 27, 60, 82, 112, 216, 304, 316, 351
CviKI_1	RGCY	9 cut(s)	10, 27, 60, 82, 112, 216, 304, 316, 351
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	1 cut(s)	231
FaiI	YATR	1 cut(s)	229
FatI	CATG	1 cut(s)	227
FauI	CCCGC	1 cut(s)	217
FokI	GGATG	2 cut(s)	110, 131
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	352
HaeIII	GGCC	2 cut(s)	27, 216
HapII	CCGG	2 cut(s)	198, 213
HgaI	GACGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	231
HinfI	GANTC	1 cut(s)	156
HpaII	CCGG	2 cut(s)	198, 213
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	109, 240
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	5 cut(s)	76, 114, 145, 181, 302
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	317
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	231
KroI	GCCGGC	2 cut(s)	197, 212
KroNI	GCCGGC	2 cut(s)	199, 214
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	7 cut(s)	92, 106, 211, 226, 248, 259, 275
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	1 cut(s)	352
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	8 cut(s)	61, 67, 259, 262, 265, 268, 289, 310
MfeI	CAATTG	1 cut(s)	20
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	2 cut(s)	20, 337
MroNI	GCCGGC	2 cut(s)	197, 212
MspI	CCGG	2 cut(s)	198, 213
MspR9I	CCNGG	1 cut(s)	263
MunI	CAATTG	1 cut(s)	20
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	16
NaeI	GCCGGC	2 cut(s)	199, 214
NdeII	GATC	1 cut(s)	131
NgoMIV	GCCGGC	2 cut(s)	197, 212
NlaIII	CATG	1 cut(s)	231
NlaIV	GGNNCC	2 cut(s)	61, 207
NspI	RCATGY	1 cut(s)	231
PctI	GAATGC	1 cut(s)	48
PdiI	GCCGGC	2 cut(s)	199, 214
PfeI	GAWTC	1 cut(s)	156
PshAI	GACNNNNGTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	2 cut(s)	61, 207
PspPI	GGNCC	2 cut(s)	25, 343
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	2 cut(s)	25, 343
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	6 cut(s)	12, 68, 186, 207, 267, 353
SexAI	ACCWGGT	1 cut(s)	261
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	2 cut(s)	20, 337
SsiI	CCGC	2 cut(s)	165, 210
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	217
TaqI	TCGA	2 cut(s)	288, 296
TaqII	GACCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	20, 337
TfiI	GAWTC	1 cut(s)	156
TspDTI	ATGAA	2 cut(s)	17, 61
VpaK11BI	GGWCC	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.