Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0021549

Physical Location & Seq

Genomic Coordinates Reverse (-)

43880028 .. 43880381

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAACAGCTACACAAGCAATCGAGCCTCCTCTTTATCCTTGTCGGCATTCTCATCGGCTCCACCTTCTTCATCCTCCAGCCCACTCTCTCCTGCCTCTCCCCTTCCGAGCCCAATCCCTCCATCCCCCGATCCTTCTCCTCCGTCCATGACAGAATCAACACCGCCTCCTTCTCCACTGACCTCCGCAATAATGCCGACAAGGTTCTCGCCGGCCTCGGCAAGGCATGTGATTATCTGAATAAGAAGAAGAAAAAGAACCGGGTCAAGTTCTGGAAGACTGGGGTTGAGACGTCAAAGAGGCTTGAAGGGAGGTTGAGGGCAGTCGAGTCGGTGAATTTGGACCACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005975 GO:0005996 GO:0008150 GO:0008152 GO:0016829 GO:0016830 GO:0016831 GO:0019321 GO:0036094 GO:0042732 GO:0043167 GO:0043168 GO:0044238 GO:0044281 GO:0048037 GO:0048040 GO:0050662 GO:0051287 GO:0070403 GO:0071704 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00520 ko01100 map00520 map01100

Pfam Domains

Protein Families

GDP_Man_Dehyd

Protein Analysis

117

Amino Acids

13.07

Weight (kDa)

10.08

Isoelectric Point (pI)

60.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021549)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000013374
rosa_multiflora	Rmu_sc0000202.1_g000030 Rmu_sc0006139.1_g000003
rosa_samantha	Rh1BG394400 Rh6DG250700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	296
AciI	CCGC	2 cut(s)	165, 187
AclWI	GGATC	1 cut(s)	126
AcsI	RAATTY	1 cut(s)	337
AcyI	GRCGYC	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	308
AluBI	AGCT	2 cut(s)	10, 351
AluI	AGCT	2 cut(s)	10, 351
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	126
AoxI	GGCC	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	346
AvaII	GGWCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	284
BccI	CCATC	1 cut(s)	131
BcgI	CGANNNNNNTGC	4 cut(s)	37, 71, 312, 346
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	1 cut(s)	263
BmrI	ACTGGG	1 cut(s)	291
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	284
BpmI	CTGGAG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	2 cut(s)	72, 123
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	2 cut(s)	20, 130
BshFI	GGCC	1 cut(s)	216
BsiSI	CCGG	2 cut(s)	213, 262
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmAI	GTCTC	1 cut(s)	284
BsmBI	CGTCTC	1 cut(s)	284
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	165, 187
BspANI	GGCC	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	131
BssNI	GRCGYC	1 cut(s)	293
BstACI	GRCGYC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	214
BstENI	CCTNNNNNAGG	1 cut(s)	221
BstF5I	GGATG	2 cut(s)	72, 123
BstKTI	GATC	1 cut(s)	134
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	231
BstSCI	CCNGG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	72, 123
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	343
CviAII	CATG	2 cut(s)	149, 228
CviJI	RGCY	8 cut(s)	10, 27, 60, 82, 112, 216, 304, 351
CviKI_1	RGCY	8 cut(s)	10, 27, 60, 82, 112, 216, 304, 351
DpnI	GATC	1 cut(s)	133
DpnII	GATC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	343
EcoNI	CCTNNNNNAGG	1 cut(s)	221
EcoT38I	GRGCYC	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	284
FaeI	CATG	2 cut(s)	152, 231
FaiI	YATR	2 cut(s)	150, 229
FatI	CATG	2 cut(s)	148, 227
FokI	GGATG	2 cut(s)	59, 110
FriOI	GRGCYC	1 cut(s)	114
FspBI	CTAG	1 cut(s)	352
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	1 cut(s)	216
HapII	CCGG	2 cut(s)	213, 262
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	2 cut(s)	152, 231
HinfI	GANTC	2 cut(s)	156, 329
HpaII	CCGG	2 cut(s)	213, 262
HphI	GGTGA	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	109, 240
Hpy188III	TCNNGA	1 cut(s)	274
HpyAV	CCTTC	5 cut(s)	76, 114, 145, 181, 302
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	152, 231
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Kzo9I	GATC	1 cut(s)	131
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	92, 106, 226, 259, 267, 275
MaeI	CTAG	1 cut(s)	352
MaeII	ACGT	1 cut(s)	293
MalI	GATC	1 cut(s)	133
MboI	GATC	1 cut(s)	131
MboII	GAAGA	4 cut(s)	61, 259, 262, 289
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	337
MlyI	GAGTC	1 cut(s)	338
MroNI	GCCGGC	1 cut(s)	212
MspI	CCGG	2 cut(s)	213, 262
MspR9I	CCNGG	1 cut(s)	263
Mva1269I	GAATGC	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	16
NaeI	GCCGGC	1 cut(s)	214
NciI	CCSGG	1 cut(s)	263
NdeII	GATC	1 cut(s)	131
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	2 cut(s)	152, 231
NlaIV	GGNNCC	1 cut(s)	61
NmeAIII	GCCGAG	1 cut(s)	198
NspI	RCATGY	1 cut(s)	231
PctI	GAATGC	1 cut(s)	48
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	1 cut(s)	343
Sau3AI	GATC	1 cut(s)	131
Sau96I	GGNCC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	114
SetI	ASST	7 cut(s)	12, 68, 186, 207, 296, 317, 353
SinI	GGWCC	1 cut(s)	343
Sse9I	AATT	1 cut(s)	337
SsiI	CCGC	2 cut(s)	165, 187
SspMI	CTAG	1 cut(s)	352
StyD4I	CCNGG	1 cut(s)	261
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	23, 327
TasI	AATT	1 cut(s)	337
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	17, 61
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	343
XagI	CCTNNNNNAGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	337
XceI	RCATGY	1 cut(s)	231
XspI	CTAG	1 cut(s)	352
ZraI	GACGTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.