RLG00000014110

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018626
Physical Location & Seq
Reverse (-)
47418377 .. 47421356
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014110

Sequence Viewer

Length: 693 bp
ATGAAATTGAATCTCACAGATCCCAGTTTCAACAGAAAATGGAATCTCATAAGATTCTCTTTATTTTGGTTGTGTGAGAAAACAAATATTACGCAACCAATGAGAGGGTGGGTGGGAGACCCAACACACCTAGTCAAACGGTGTCTTCGGCAACTACACATCAAAATGCAACAAATGGACATTTCAGAAATTGAGCCTGGTATAAGTATCCAGCTGGAGAAAAGAGGCAGCAAAGAAAATGAAGGACATGGTGAAGAAAATGAAGAACAAGGTGTAGAAAAACCTGCCCAAGGACAAAGCAAGAGAATTAATGTGCTCAAAGGTGGGATGAGGAGACCCTGCATTTGGATATTGCCAAGAGCTATATTGTTATGGAAAATCCAAGAGGTCAGGTTTGGTCCTGTCATATACACATCAGAGACAGTTAATCTTGCTCCAGATACTGTTATGGAAGAATCCCACACAAGACCTCCGAGATCTCGAAGGTTTGTGAAGAGACCTCCTTTTCTACACCAAGGAGAGGACGGTCTACACTATGCTCTTGCGGCTGAAATGCTTAGCCAAAAACGCGCAGAAGCTCGTCGGCTTCTGGGCCTGGGTGGGGCAGATCGAGCCAATTGTGGATCAGATAATCTTGTTCCAGATATTATTATGGAAGAATCTGCACAAGAGCTTGAGTTTGCTCCCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

231

Amino Acids

26.36

Weight (kDa)

8.69

Isoelectric Point (pI)

62.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018626)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0266161
rosa_laevigata RLG00000014110
rosa_roxburghii Rroxscaffold_174G00435330 Rroxscaffold_7G00201850
rosa_rugosa Rorug06G0024400
rosa_samantha Rh6AG145100 Rh6BG145800 Rh6CG142200 Rh6DG130300
rosa_wichuraiana Rw6G012530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 529
AccII CGCG 1 cut(s) 570
AciI CCGC 1 cut(s) 545
AclWI GGATC 2 cut(s) 14, 631
AfiI CCNNNNNNNGG 5 cut(s) 104, 290, 345, 520, 601
AgsI TTSAA 2 cut(s) 10, 31
AjnI CCWGG 2 cut(s) 196, 594
AluBI AGCT 4 cut(s) 214, 362, 578, 673
AluI AGCT 4 cut(s) 214, 362, 578, 673
Alw21I GWGCWC 1 cut(s) 318
Alw26I GTCTC 4 cut(s) 111, 328, 413, 490
AlwI GGATC 2 cut(s) 14, 631
AlwNI CAGNNNCTG 1 cut(s) 443
AoxI GGCC 1 cut(s) 592
ApeKI GCWGC 1 cut(s) 228
ArsI GACNNNNNNTTYG 2 cut(s) 327, 359
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 2 cut(s) 398, 592
AsuHPI GGTGA 1 cut(s) 263
AvaII GGWCC 1 cut(s) 398
BbsI GAAGAC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 1 cut(s) 240
BciT130I CCWGG 2 cut(s) 198, 596
BciVI GTATCC 1 cut(s) 218
BcoDI GTCTC 4 cut(s) 111, 328, 413, 490
BfaI CTAG 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 292
BfuI GTATCC 1 cut(s) 218
BglII AGATCT 1 cut(s) 476
BisI GCNGC 2 cut(s) 229, 546
BlpI GCTNAGC 1 cut(s) 557
BlsI GCNGC 2 cut(s) 230, 547
Bme1390I CCNGG 2 cut(s) 198, 596
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 2 cut(s) 398, 592
BmrFI CCNGG 2 cut(s) 198, 596
BmrI ACTGGG 1 cut(s) 18
BmuI ACTGGG 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 137
BpmI CTGGAG 2 cut(s) 236, 420
Bpu1102I GCTNAGC 1 cut(s) 557
BsaI GGTCTC 3 cut(s) 111, 328, 490
BsaJI CCNNGG 3 cut(s) 289, 514, 595
BsaXI ACNNNNNCTCC 2 cut(s) 454, 484
Bsc4I CCNNNNNNNGG 5 cut(s) 104, 290, 345, 520, 601
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 198, 596
BseDI CCNNGG 3 cut(s) 289, 514, 595
BseGI GGATG 1 cut(s) 333
BseLI CCNNNNNNNGG 5 cut(s) 104, 290, 345, 520, 601
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 346
BseXI GCAGC 1 cut(s) 240
BsgI GTGCAG 1 cut(s) 648
Bsh1236I CGCG 1 cut(s) 570
BshFI GGCC 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 318
BslI CCNNNNNNNGG 5 cut(s) 104, 290, 345, 520, 601
BsmAI GTCTC 4 cut(s) 111, 328, 413, 490
BsnI GGCC 1 cut(s) 594
Bso31I GGTCTC 3 cut(s) 111, 328, 490
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 4 cut(s) 19, 476, 607, 623
Bsp1720I GCTNAGC 1 cut(s) 557
BspACI CCGC 1 cut(s) 545
BspANI GGCC 1 cut(s) 594
BspFNI CGCG 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 292
BspPI GGATC 2 cut(s) 14, 631
BspTNI GGTCTC 3 cut(s) 111, 328, 490
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 3 cut(s) 289, 514, 595
BssMI GATC 4 cut(s) 19, 476, 607, 623
BssT1I CCWWGG 2 cut(s) 289, 514
Bst2UI CCWGG 2 cut(s) 198, 596
Bst4CI ACNGT 4 cut(s) 141, 424, 445, 527
Bst6I CTCTTC 1 cut(s) 488
BstDEI CTNAG 1 cut(s) 557
BstENI CCTNNNNNAGG 1 cut(s) 288
BstF5I GGATG 1 cut(s) 333
BstFNI CGCG 1 cut(s) 570
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 4 cut(s) 22, 479, 610, 626
BstMAI GTCTC 4 cut(s) 111, 328, 413, 490
BstMBI GATC 4 cut(s) 19, 476, 607, 623
BstMWI GCNNNNNNNGC 3 cut(s) 545, 567, 611
BstNI CCWGG 2 cut(s) 198, 596
BstSCI CCNGG 2 cut(s) 196, 594
BstUI CGCG 1 cut(s) 570
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 2 cut(s) 19, 476
BstYI RGATCY 2 cut(s) 19, 476
BsuI GTATCC 1 cut(s) 218
BsuRI GGCC 1 cut(s) 594
BtsCI GGATG 1 cut(s) 333
BveI ACCTGC 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 443
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 2 cut(s) 398, 592
CviAII CATG 1 cut(s) 248
DdeI CTNAG 1 cut(s) 557
DpnI GATC 4 cut(s) 21, 478, 609, 625
DpnII GATC 4 cut(s) 19, 476, 607, 623
Eam1104I CTCTTC 1 cut(s) 488
EarI CTCTTC 1 cut(s) 488
Eco130I CCWWGG 2 cut(s) 289, 514
Eco31I GGTCTC 3 cut(s) 111, 328, 490
Eco47I GGWCC 1 cut(s) 398
EcoNI CCTNNNNNAGG 1 cut(s) 288
EcoRII CCWGG 2 cut(s) 196, 594
EcoT14I CCWWGG 2 cut(s) 289, 514
ErhI CCWWGG 2 cut(s) 289, 514
FaeI CATG 1 cut(s) 251
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 529
Fnu4HI GCNGC 2 cut(s) 229, 546
FokI GGATG 1 cut(s) 340
Fsp4HI GCNGC 2 cut(s) 229, 546
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 571
GluI GCNGC 2 cut(s) 229, 546
GsuI CTGGAG 2 cut(s) 236, 420
HaeIII GGCC 1 cut(s) 594
HhaI GCGC 1 cut(s) 572
Hin1II CATG 1 cut(s) 251
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HinfI GANTC 5 cut(s) 10, 43, 54, 455, 659
HphI GGTGA 1 cut(s) 263
Hpy166II GTNNAC 1 cut(s) 530
Hpy188I TCNGA 4 cut(s) 187, 418, 474, 628
Hpy188III TCNNGA 3 cut(s) 437, 480, 641
Hpy8I GTNNAC 1 cut(s) 530
Hpy99I CGWCG 1 cut(s) 585
HpyAV CCTTC 2 cut(s) 236, 477
HpyCH4III ACNGT 4 cut(s) 141, 424, 445, 527
HpyCH4V TGCA 3 cut(s) 169, 342, 665
HpyF10VI GCNNNNNNNGC 3 cut(s) 545, 567, 611
HpyF3I CTNAG 1 cut(s) 557
Hsp92II CATG 1 cut(s) 251
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 4 cut(s) 19, 476, 607, 623
LmnI GCTCC 2 cut(s) 439, 688
Lsp1109I GCAGC 1 cut(s) 240
MaeI CTAG 1 cut(s) 131
MalI GATC 4 cut(s) 21, 478, 609, 625
MboI GATC 4 cut(s) 19, 476, 607, 623
MboII GAAGA 6 cut(s) 137, 266, 275, 464, 505, 668
MfeI CAATTG 1 cut(s) 616
MflI RGATCY 2 cut(s) 19, 476
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 4 cut(s) 5, 189, 306, 616
MnlI CCTC 7 cut(s) 98, 218, 324, 379, 480, 510, 514
MseI TTAA 2 cut(s) 309, 426
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 198, 596
MunI CAATTG 1 cut(s) 616
MvaI CCWGG 2 cut(s) 198, 596
MvnI CGCG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 545, 567, 611
NdeII GATC 4 cut(s) 19, 476, 607, 623
NlaIII CATG 1 cut(s) 251
PfeI GAWTC 5 cut(s) 10, 43, 54, 455, 659
PkrI GCNGC 2 cut(s) 230, 547
PshBI ATTAAT 1 cut(s) 309
Psp6I CCWGG 2 cut(s) 196, 594
PspGI CCWGG 2 cut(s) 196, 594
PspPI GGNCC 2 cut(s) 398, 592
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 2 cut(s) 19, 476
PvuII CAGCTG 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 164
SaqAI TTAA 2 cut(s) 309, 426
SatI GCNGC 2 cut(s) 229, 546
Sau3AI GATC 4 cut(s) 19, 476, 607, 623
Sau96I GGNCC 2 cut(s) 398, 592
ScrFI CCNGG 2 cut(s) 198, 596
SduI GDGCHC 1 cut(s) 318
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 4 cut(s) 5, 189, 306, 616
SsiI CCGC 1 cut(s) 545
SspI AATATT 1 cut(s) 88
SspMI CTAG 1 cut(s) 131
StyD4I CCNGG 2 cut(s) 196, 594
StyI CCWWGG 2 cut(s) 289, 514
TaaI ACNGT 4 cut(s) 141, 424, 445, 527
TaqI TCGA 2 cut(s) 481, 610
TasI AATT 4 cut(s) 5, 189, 306, 616
TauI GCSGC 1 cut(s) 548
TfiI GAWTC 5 cut(s) 10, 43, 54, 455, 659
Tru1I TTAA 2 cut(s) 309, 426
Tru9I TTAA 2 cut(s) 309, 426
TseI GCWGC 1 cut(s) 228
TspDTI ATGAA 3 cut(s) 17, 255, 276
VpaK11BI GGWCC 1 cut(s) 398
VspI ATTAAT 1 cut(s) 309
XagI CCTNNNNNAGG 1 cut(s) 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 105
XmiI GTMKAC 1 cut(s) 529
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.