Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018626

Physical Location & Seq

Genomic Coordinates Forward (+)

23320226 .. 23336456

Gene Structure 16231 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG145800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGTAGGCAACGACCTTGACCTATGGATTCCAAGGGGAGCCGATATCGAAGCAGATGAGGTTCCCGATTATGGTGAGTTCTTTTTAGGGTTTCGAAGCTTCACGGGTTTATGTGAACGGGGATGGTATTTAAGCTTTCACGAGTTCGAGATCTACGGTTTCCATAAAAAAATTGGGTTATGGGAATTCGAGGTCTACAAATCTGAGATATCCAATTTGAAGAAGACTGTTCTATTGAGTAGTGATTTGTGGATGGACACCAAACAGTTATTCAATCCTCTCTTTTTCAAAGAGATGAGACACTTTGGGAATTTTTTTCGAGCATTTCGAAGCATATTTTACTCATTTTCATTCTTGGAATGGGAGGCGTTGGTAAGAGAAACAACATGCAAGTTCACACAGTTTTGGTCGTGTGAGAAAACAAATATTACGCAACCAATGAGAGGGCGGGTGGGAGACTCAACAGACCTAGTCAAATGGTGTCTTCCGCAACTACACATCAAAATGCAACAAATGGACATTTCAGAAATTGAGCCTGGTATAAGTATCCAGCTGGCGAAAAGAGGCAAGAAAGAAAATGAAGGACATGGTGAAGAAAATGAAGGACAAGGTGTAGAAAAACCTGCCCAAGGACAAAACAAGAGAATTAATGAAACAATTATGAGAAGGAAAGAACAAAGAAGAAAGCTCTATGATGACAATGTTAAGGATTTCCCTTCTGATGGATATTTTAAACATGCTCAAAGGTGGGATGAGGAGACCCTGCATTTGCATATTGCCAAGAGCTGTCCAATACCTTATGTTCATGTAGAAGGAAATGTTAAAGTTTTGAAGCAATTGGATGATTTGAAGCTTGCAAGCAACTTCACAAGATTAGTACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

294

Amino Acids

34.69

Weight (kDa)

6.33

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0266161
rosa_laevigata	RLG00000014110
rosa_roxburghii	Rroxscaffold_174G00435330 Rroxscaffold_7G00201850
rosa_rugosa	Rorug06G0024400
rosa_samantha	Rh6AG145100 Rh6BG145800 Rh6CG142200 Rh6DG130300
rosa_wichuraiana	Rw6G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	631
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	448, 488
AcsI	RAATTY	2 cut(s)	185, 310
AfaI	GTAC	1 cut(s)	879
AfiI	CCNNNNNNNGG	4 cut(s)	71, 443, 629, 722
AgsI	TTSAA	5 cut(s)	220, 274, 289, 832, 850
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	6 cut(s)	99, 135, 553, 688, 786, 853
AluI	AGCT	6 cut(s)	99, 135, 553, 688, 786, 853
Alw26I	GTCTC	3 cut(s)	292, 450, 752
ApoI	RAATTY	2 cut(s)	185, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	751, 783
AseI	ATTAAT	1 cut(s)	648
AsuHPI	GGTGA	2 cut(s)	86, 602
AsuII	TTCGAA	2 cut(s)	94, 328
BauI	CACGAG	1 cut(s)	140
BbsI	GAAGAC	2 cut(s)	230, 476
BccI	CCATC	3 cut(s)	117, 247, 716
BciT130I	CCWGG	1 cut(s)	537
BciVI	GTATCC	1 cut(s)	557
BcoDI	GTCTC	3 cut(s)	292, 450, 752
BfaI	CTAG	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	631
BfuI	GTATCC	1 cut(s)	557
BglII	AGATCT	1 cut(s)	150
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	1 cut(s)	537
BmiI	GGNNCC	2 cut(s)	40, 63
BmrFI	CCNGG	1 cut(s)	537
BpiI	GAAGAC	2 cut(s)	230, 476
Bpu14I	TTCGAA	2 cut(s)	94, 328
BsaI	GGTCTC	1 cut(s)	752
BsaJI	CCNNGG	2 cut(s)	32, 628
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 443, 629, 722
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	2 cut(s)	32, 628
BseGI	GGATG	4 cut(s)	128, 258, 757, 847
BseLI	CCNNNNNNNGG	4 cut(s)	71, 443, 629, 722
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	770
BslI	CCNNNNNNNGG	4 cut(s)	71, 443, 629, 722
BsmAI	GTCTC	3 cut(s)	292, 450, 752
Bso31I	GGTCTC	1 cut(s)	752
Bsp119I	TTCGAA	2 cut(s)	94, 328
Bsp143I	GATC	1 cut(s)	150
BspACI	CCGC	2 cut(s)	448, 488
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	40, 63
BspMI	ACCTGC	1 cut(s)	631
BspT104I	TTCGAA	2 cut(s)	94, 328
BspTNI	GGTCTC	1 cut(s)	752
BssECI	CCNNGG	2 cut(s)	32, 628
BssMI	GATC	1 cut(s)	150
BssSI	CACGAG	1 cut(s)	140
BssT1I	CCWWGG	2 cut(s)	32, 628
Bst2BI	CACGAG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	4 cut(s)	158, 229, 267, 402
BstBI	TTCGAA	2 cut(s)	94, 328
BstC8I	GCNNGC	3 cut(s)	555, 855, 859
BstDEI	CTNAG	1 cut(s)	204
BstENI	CCTNNNNNAGG	1 cut(s)	627
BstF5I	GGATG	4 cut(s)	128, 258, 757, 847
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	3 cut(s)	292, 450, 752
BstMBI	GATC	1 cut(s)	150
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	2 cut(s)	390, 740
BstSCI	CCNGG	1 cut(s)	535
BstV2I	GAAGAC	2 cut(s)	230, 476
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BsuI	GTATCC	1 cut(s)	557
BtsCI	GGATG	4 cut(s)	128, 258, 757, 847
BveI	ACCTGC	1 cut(s)	631
Cac8I	GCNNGC	3 cut(s)	555, 855, 859
Csp6I	GTAC	1 cut(s)	878
CviAII	CATG	4 cut(s)	387, 587, 737, 806
CviJI	RGCY	8 cut(s)	41, 99, 135, 535, 553, 688, 786, 853
CviKI_1	RGCY	8 cut(s)	41, 99, 135, 535, 553, 688, 786, 853
CviQI	GTAC	1 cut(s)	878
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
DraI	TTTAAA	1 cut(s)	733
Eco130I	CCWWGG	2 cut(s)	32, 628
Eco31I	GGTCTC	1 cut(s)	752
Eco32I	GATATC	2 cut(s)	46, 210
EcoNI	CCTNNNNNAGG	1 cut(s)	627
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	1 cut(s)	535
EcoRV	GATATC	2 cut(s)	46, 210
EcoT14I	CCWWGG	2 cut(s)	32, 628
ErhI	CCWWGG	2 cut(s)	32, 628
FaeI	CATG	4 cut(s)	390, 590, 740, 809
FatI	CATG	4 cut(s)	386, 586, 736, 805
FauI	CCCGC	1 cut(s)	441
FblI	GTMKAC	1 cut(s)	195
FokI	GGATG	4 cut(s)	135, 265, 764, 854
FspBI	CTAG	1 cut(s)	470
Hin1II	CATG	4 cut(s)	390, 590, 740, 809
HindIII	AAGCTT	3 cut(s)	97, 133, 851
HinfI	GANTC	2 cut(s)	28, 458
HphI	GGTGA	2 cut(s)	86, 602
Hpy166II	GTNNAC	3 cut(s)	116, 196, 396
Hpy188I	TCNGA	3 cut(s)	205, 526, 721
Hpy188III	TCNNGA	3 cut(s)	65, 140, 148
Hpy8I	GTNNAC	3 cut(s)	116, 196, 396
HpyAV	CCTTC	5 cut(s)	575, 596, 660, 726, 806
HpyCH4III	ACNGT	4 cut(s)	158, 229, 267, 402
HpyCH4V	TGCA	5 cut(s)	390, 508, 766, 772, 857
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	4 cut(s)	390, 590, 740, 809
Kzo9I	GATC	1 cut(s)	150
LmnI	GCTCC	1 cut(s)	38
LpnPI	CCDG	6 cut(s)	522, 539, 549, 563, 636, 776
MaeI	CTAG	1 cut(s)	470
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	5 cut(s)	232, 235, 476, 605, 693
MfeI	CAATTG	1 cut(s)	836
MflI	RGATCY	1 cut(s)	150
MluCI	AATT	8 cut(s)	171, 185, 214, 310, 528, 645, 657, 836
MlyI	GAGTC	1 cut(s)	452
MnlI	CCTC	7 cut(s)	52, 184, 288, 358, 437, 557, 748
MseI	TTAA	6 cut(s)	131, 648, 705, 732, 822, 883
MslI	CAYNNNNRTG	1 cut(s)	503
MspA1I	CMGCKG	1 cut(s)	553
MspR9I	CCNGG	1 cut(s)	537
MunI	CAATTG	1 cut(s)	836
MvaI	CCWGG	1 cut(s)	537
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	4 cut(s)	390, 590, 740, 809
NlaIV	GGNNCC	2 cut(s)	40, 63
NspI	RCATGY	2 cut(s)	390, 740
NspV	TTCGAA	2 cut(s)	94, 328
PcsI	WCGNNNNNNNCGW	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	28
PflFI	GACNNNGTC	1 cut(s)	470
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	2 cut(s)	40, 63
PsuI	RGATCY	1 cut(s)	150
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	553
RsaI	GTAC	1 cut(s)	879
RsaNI	GTAC	1 cut(s)	878
RseI	CAYNNNNRTG	1 cut(s)	503
SaqAI	TTAA	6 cut(s)	131, 648, 705, 732, 822, 883
Sau3AI	GATC	1 cut(s)	150
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	537
SfuI	TTCGAA	2 cut(s)	94, 328
SmiMI	CAYNNNNRTG	1 cut(s)	503
Sse9I	AATT	8 cut(s)	171, 185, 214, 310, 528, 645, 657, 836
SsiI	CCGC	2 cut(s)	448, 488
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	470
StyD4I	CCNGG	1 cut(s)	535
StyI	CCWWGG	2 cut(s)	32, 628
TaaI	ACNGT	4 cut(s)	158, 229, 267, 402
TaqI	TCGA	6 cut(s)	48, 94, 147, 189, 319, 328
TasI	AATT	8 cut(s)	171, 185, 214, 310, 528, 645, 657, 836
TatI	WGTACW	1 cut(s)	877
TfiI	GAWTC	1 cut(s)	28
Tru1I	TTAA	6 cut(s)	131, 648, 705, 732, 822, 883
Tru9I	TTAA	6 cut(s)	131, 648, 705, 732, 822, 883
TspDTI	ATGAA	5 cut(s)	339, 594, 615, 666, 794
Tth111I	GACNNNGTC	1 cut(s)	470
VspI	ATTAAT	1 cut(s)	648
XagI	CCTNNNNNAGG	1 cut(s)	627
XapI	RAATTY	2 cut(s)	185, 310
XceI	RCATGY	2 cut(s)	390, 740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	1 cut(s)	470
ZrmI	AGTACT	1 cut(s)	879

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.