Rroxscaffold_7G00201850

Belongs to the helicase family. Dicer subfamily

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
49656362 .. 49660146
3785 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00201850.1

Sequence Viewer

Length: 225 bp
ATGAGAAGGAAAGAACAAAGAAGAAAGCTCTATGATGACAATGTTAAGGAGTTCCCTTCTGATGGATATTTTAAACCTGCTCAAAGGTGGGATGAGGAGACCCTGCATTTGCATATCGCCAAGAGCTGTCCAATACCTTATGTTCATGTAGAAGGAAATGTTAAAGTTCTGAAGCAATTGGATGATTTGAAGCTTGCAAGCAACTTCACAAGATCAGTGCTTTAA

Protein Analysis

74

Amino Acids

8.8

Weight (kDa)

9.17

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018626)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 191
AfiI CCNNNNNNNGG 1 cut(s) 62
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 3 cut(s) 28, 126, 193
AluI AGCT 3 cut(s) 28, 126, 193
Alw26I GTCTC 1 cut(s) 92
ArsI GACNNNNNNTTYG 2 cut(s) 91, 123
BccI CCATC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 97, 187
BseLI CCNNNNNNNGG 1 cut(s) 62
BseRI GAGGAG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 62
BsmAI GTCTC 1 cut(s) 92
Bso31I GGTCTC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 212
BspMI ACCTGC 1 cut(s) 85
BspTNI GGTCTC 1 cut(s) 92
BssMI GATC 1 cut(s) 212
BstC8I GCNNGC 2 cut(s) 195, 199
BstF5I GGATG 2 cut(s) 97, 187
BstKTI GATC 1 cut(s) 215
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 212
BtsCI GGATG 2 cut(s) 97, 187
BtsIMutI CAGTG 1 cut(s) 222
BveI ACCTGC 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 195, 199
CviAII CATG 1 cut(s) 146
CviJI RGCY 3 cut(s) 28, 126, 193
CviKI_1 RGCY 3 cut(s) 28, 126, 193
DpnI GATC 1 cut(s) 214
DpnII GATC 1 cut(s) 212
DraI TTTAAA 1 cut(s) 73
Eco31I GGTCTC 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 191
FaeI CATG 1 cut(s) 149
FaiI YATR 4 cut(s) 33, 114, 141, 147
FatI CATG 1 cut(s) 145
FokI GGATG 2 cut(s) 104, 194
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 61, 171
HpyAV CCTTC 2 cut(s) 66, 146
HpyCH4V TGCA 3 cut(s) 106, 112, 197
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 212
LpnPI CCDG 2 cut(s) 90, 116
MalI GATC 1 cut(s) 214
MboI GATC 1 cut(s) 212
MboII GAAGA 1 cut(s) 33
MfeI CAATTG 1 cut(s) 176
MluCI AATT 1 cut(s) 176
MnlI CCTC 1 cut(s) 88
MseI TTAA 4 cut(s) 45, 72, 162, 223
MunI CAATTG 1 cut(s) 176
NdeII GATC 1 cut(s) 212
NlaIII CATG 1 cut(s) 149
SaqAI TTAA 4 cut(s) 45, 72, 162, 223
Sau3AI GATC 1 cut(s) 212
SetI ASST 6 cut(s) 30, 79, 89, 128, 139, 195
SgeI CNNG 6 cut(s) 89, 115, 133, 158, 206, 210
Sse9I AATT 1 cut(s) 176
TasI AATT 1 cut(s) 176
Tru1I TTAA 4 cut(s) 45, 72, 162, 223
Tru9I TTAA 4 cut(s) 45, 72, 162, 223
TscAI CASTG 1 cut(s) 222
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.