Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018626

Physical Location & Seq

Genomic Coordinates Forward (+)

18441611 .. 18444404

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG142200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGAAACCAAACAGTTATTCAATCCTCTCTTTTTCAAAGAGATGAGACACTTTGGGAATTTTTTCCGAGCATTTCGAAGCACATTTTACTCATTTTCATTCTTGGAATGGGAGGCGTTGGTAAGAGAAACAACATGCAAGTTCACACAGTTTTGGTCGTGTGAGAAAACAAATATTACGCAACCAATGAGAGGGCGGGTGGGAGACTCAACAGACCTAGTCAAATGGTGTCTTCCGCAACTACACATCAAAATGCAACAAATGGACATTTCAGAAATTGAGCCTGGTATAAGTATCCAGCTGGAGAAAAGAGGCAAGAAAGAAAATGAAGGACATGGTGAAGAAAATGAAGAACAAGGTGTAGAAAAACCTGCCCAAGGACAAAACAAGAGAATTAATGAAACAATTATGAGAAGGAAAGAACAAAGAAGGAAGCTCTATGATGACAATGTTAAGGAGTTCCCTTCTGATGGATATTTTAAAGCCCCTTCTGATGGATATTTTAAAGCTGCTCAAAGGTGGGATGAGGAGACCCTGCATTTGCATATTGCCAAGAGCTGTCCAATACCTTATGTTCATGTAGAAGGAAATGTTAAAGTTCTGAAGCAATTGGATGATTTGAAGCTTGCAAGCAACTTCACAAGATCAGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009892 GO:0009987 GO:0010033 GO:0010216 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032991 GO:0034641 GO:0035194 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051214 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0098542 GO:0098586 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

218

Amino Acids

25.72

Weight (kDa)

8.27

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018626)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0266161
rosa_laevigata	RLG00000014110
rosa_roxburghii	Rroxscaffold_174G00435330 Rroxscaffold_7G00201850
rosa_rugosa	Rorug06G0024400
rosa_samantha	Rh6AG145100 Rh6BG145800 Rh6CG142200 Rh6DG130300
rosa_wichuraiana	Rw6G012530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	379
AciI	CCGC	2 cut(s)	196, 236
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	1 cut(s)	623
AfiI	CCNNNNNNNGG	4 cut(s)	191, 377, 470, 494
AgsI	TTSAA	3 cut(s)	22, 37, 622
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	5 cut(s)	301, 436, 509, 558, 625
AluI	AGCT	5 cut(s)	301, 436, 509, 558, 625
Alw26I	GTCTC	3 cut(s)	40, 198, 524
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	523, 555
AseI	ATTAAT	1 cut(s)	396
Asp700I	GAANNNNTTC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	350
AsuII	TTCGAA	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	2 cut(s)	464, 488
BciT130I	CCWGG	1 cut(s)	285
BciVI	GTATCC	1 cut(s)	305
BcoDI	GTCTC	3 cut(s)	40, 198, 524
BfaI	CTAG	1 cut(s)	218
BfuAI	ACCTGC	1 cut(s)	379
BfuI	GTATCC	1 cut(s)	305
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	224
BpmI	CTGGAG	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	4 cut(s)	191, 377, 470, 494
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	2 cut(s)	529, 619
BseLI	CCNNNNNNNGG	4 cut(s)	191, 377, 470, 494
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	1 cut(s)	496
BslI	CCNNNNNNNGG	4 cut(s)	191, 377, 470, 494
BsmAI	GTCTC	3 cut(s)	40, 198, 524
Bso31I	GGTCTC	1 cut(s)	524
Bsp119I	TTCGAA	1 cut(s)	76
Bsp143I	GATC	1 cut(s)	644
BspACI	CCGC	2 cut(s)	196, 236
BspMI	ACCTGC	1 cut(s)	379
BspT104I	TTCGAA	1 cut(s)	76
BspTNI	GGTCTC	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	376
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	2 cut(s)	15, 150
BstBI	TTCGAA	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	627, 631
BstENI	CCTNNNNNAGG	1 cut(s)	375
BstF5I	GGATG	2 cut(s)	529, 619
BstKTI	GATC	1 cut(s)	647
BstMAI	GTCTC	3 cut(s)	40, 198, 524
BstMBI	GATC	1 cut(s)	644
BstNI	CCWGG	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	138
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	1 cut(s)	224
BsuI	GTATCC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	529, 619
BtsIMutI	CAGTG	1 cut(s)	654
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	2 cut(s)	627, 631
CviAII	CATG	3 cut(s)	135, 335, 578
CviJI	RGCY	7 cut(s)	283, 301, 436, 485, 509, 558, 625
CviKI_1	RGCY	7 cut(s)	283, 301, 436, 485, 509, 558, 625
DpnI	GATC	1 cut(s)	646
DpnII	GATC	1 cut(s)	644
DraI	TTTAAA	2 cut(s)	481, 505
Eco130I	CCWWGG	1 cut(s)	376
Eco31I	GGTCTC	1 cut(s)	524
Eco57I	CTGAAG	1 cut(s)	623
EcoNI	CCTNNNNNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	376
ErhI	CCWWGG	1 cut(s)	376
FaeI	CATG	3 cut(s)	138, 338, 581
FaiI	YATR	8 cut(s)	136, 290, 336, 410, 441, 546, 573, 579
FatI	CATG	3 cut(s)	134, 334, 577
FauI	CCCGC	1 cut(s)	189
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	536, 626
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	510
GsuI	CTGGAG	1 cut(s)	323
Hin1II	CATG	3 cut(s)	138, 338, 581
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	1 cut(s)	206
HphI	GGTGA	1 cut(s)	350
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	5 cut(s)	68, 274, 469, 493, 603
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	6 cut(s)	323, 408, 423, 474, 498, 578
HpyCH4III	ACNGT	2 cut(s)	15, 150
HpyCH4V	TGCA	5 cut(s)	138, 256, 538, 544, 629
Hsp92II	CATG	3 cut(s)	138, 338, 581
Kzo9I	GATC	1 cut(s)	644
LpnPI	CCDG	6 cut(s)	270, 287, 297, 311, 384, 548
Lsp1109I	GCAGC	1 cut(s)	496
MaeI	CTAG	1 cut(s)	218
MalI	GATC	1 cut(s)	646
MboI	GATC	1 cut(s)	644
MboII	GAAGA	3 cut(s)	224, 353, 362
MfeI	CAATTG	1 cut(s)	608
MluCI	AATT	5 cut(s)	58, 276, 393, 405, 608
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	5 cut(s)	36, 106, 185, 305, 520
MroXI	GAANNNNTTC	1 cut(s)	62
MseI	TTAA	6 cut(s)	396, 453, 480, 504, 594, 655
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	301
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	1 cut(s)	608
MvaI	CCWGG	1 cut(s)	285
NdeII	GATC	1 cut(s)	644
NlaIII	CATG	3 cut(s)	138, 338, 581
NspI	RCATGY	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	62
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	200
PshBI	ATTAAT	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	283
PspGI	CCWGG	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	251
SaqAI	TTAA	6 cut(s)	396, 453, 480, 504, 594, 655
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	1 cut(s)	644
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	285
SfuI	TTCGAA	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	5 cut(s)	58, 276, 393, 405, 608
SsiI	CCGC	2 cut(s)	196, 236
SspI	AATATT	1 cut(s)	175
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	376
TaaI	ACNGT	2 cut(s)	15, 150
TaqI	TCGA	1 cut(s)	76
TasI	AATT	5 cut(s)	58, 276, 393, 405, 608
Tru1I	TTAA	6 cut(s)	396, 453, 480, 504, 594, 655
Tru9I	TTAA	6 cut(s)	396, 453, 480, 504, 594, 655
TscAI	CASTG	1 cut(s)	654
TseI	GCWGC	1 cut(s)	509
TspDTI	ATGAA	5 cut(s)	87, 342, 363, 414, 566
TspRI	CASTG	1 cut(s)	654
Tth111I	GACNNNGTC	1 cut(s)	218
VspI	ATTAAT	1 cut(s)	396
XagI	CCTNNNNNAGG	1 cut(s)	375
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	62
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.