Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0019025

Physical Location & Seq

Genomic Coordinates Reverse (-)

64092543 .. 64093163

Gene Structure 621 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015291

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCCATGAGAAAGATAGAGAATGAAACCAATCTTCAGGTGACATTCTCTAAACGCCGCACTGGTCTGTTCAAAAAGGCCAGCGAGCTGTGCACCCTTAGTGGTGCAGAGATGGCCATTGTAGTTTTCTCGCCGGGCAAAAAACCATACTCTTTCGGCCACCCGAACGTAGAATCTATCATTGAGCGTTATCTGTCTGGGTCTCATCAGCCGCTCAACAACTCGAGCACAGCCCAAGCTGCCCGACTCATAGAAGAAGCTAATCGCAACGCGACGCTGAGTCGTCTCAATGAAGAGTTAACTTTCCTTAATGAAATGCGAGACGAGGAGCTGAGGAAGGGCGAGGAGCTGCTGCTGACGGAGAGGGCTGGCCAACATTTGCATTGGCGAGAAAAGCCAAAGGAGGAGTTGGATACCCAACAACTGATGTGGCTGAAGATGGAGATGCAGGAGCTGCATCGCAGGGTGGCTCAGGAGACTCAGTTCAGGCAGCAGTTAGCTCTATTTGATACCACCGATAACTTGATGAATGAGCAGCACTTCACAAACCCTATGGCGCCATTTTTTGCAGGGATTCCTTCAACTTCAAGCCAAGGCGCGATGAATAACGATGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

207

Amino Acids

23.66

Weight (kDa)

5.91

Isoelectric Point (pI)

46.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	5 - 52	2.6e-24	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019025)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0245901
rosa_laevigata	RLG00000015291
rosa_multiflora	Rmu_sc0005570.1_g000010
rosa_roxburghii	Rroxscaffold_7G00215110
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6BG027900 Rh6CG027700 Rh6DG026800
rosa_wichuraiana	Rw6G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	556
AccBSI	CCGCTC	1 cut(s)	214
AccII	CGCG	2 cut(s)	272, 599
AciI	CCGC	2 cut(s)	58, 212
AcoI	YGGCCR	4 cut(s)	3, 114, 157, 370
AcuI	CTGAAG	2 cut(s)	20, 455
AcyI	GRCGYC	1 cut(s)	557
AgsI	TTSAA	3 cut(s)	73, 582, 588
AhdI	GACNNNNNGTC	1 cut(s)	279
AloI	GAACNNNNNNTCC	2 cut(s)	467, 499
AluBI	AGCT	7 cut(s)	88, 239, 260, 331, 349, 454, 500
AluI	AGCT	7 cut(s)	88, 239, 260, 331, 349, 454, 500
Alw21I	GWGCWC	2 cut(s)	95, 230
Alw26I	GTCTC	4 cut(s)	207, 290, 315, 470
Alw44I	GTGCAC	1 cut(s)	91
AlwNI	CAGNNNCTG	1 cut(s)	454
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	5 cut(s)	3, 78, 114, 157, 370
ApaLI	GTGCAC	1 cut(s)	91
ApeKI	GCWGC	6 cut(s)	239, 349, 352, 454, 490, 535
AspLEI	GCGC	2 cut(s)	559, 599
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	52
AvaI	CYCGRG	1 cut(s)	223
BaeGI	GKGCMC	1 cut(s)	95
BalI	TGGCCA	3 cut(s)	5, 116, 372
BanI	GGYRCC	1 cut(s)	556
Bbv12I	GWGCWC	2 cut(s)	95, 230
BbvCI	CCTCAGC	1 cut(s)	332
BbvI	GCAGC	6 cut(s)	226, 336, 339, 441, 502, 547
BccI	CCATC	2 cut(s)	106, 433
BciVI	GTATCC	1 cut(s)	406
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	4 cut(s)	207, 290, 315, 470
BfoI	RGCGCY	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	406
BisI	GCNGC	8 cut(s)	58, 212, 240, 350, 353, 455, 491, 536
BlsI	GCNGC	8 cut(s)	59, 213, 241, 351, 354, 456, 492, 537
Bme1390I	CCNGG	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	279
BmeT110I	CYCGRG	1 cut(s)	223
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	435, 466, 601
Bpu10I	CCTNAGC	2 cut(s)	332, 471
BpuMI	CCSGG	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	557
BsaI	GGTCTC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	592
BsaXI	ACNNNNNCTCC	2 cut(s)	467, 497
Bse1I	ACTGG	1 cut(s)	67
BseDI	CCNNGG	1 cut(s)	592
BseMII	CTCAG	4 cut(s)	269, 323, 485, 494
BseNI	ACTGG	1 cut(s)	67
BseRI	GAGGAG	3 cut(s)	341, 359, 419
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	6 cut(s)	226, 336, 339, 441, 502, 547
BsgI	GTGCAG	1 cut(s)	126
Bsh1236I	CGCG	2 cut(s)	272, 599
BshFI	GGCC	5 cut(s)	5, 80, 116, 159, 372
BshNI	GGYRCC	1 cut(s)	556
BsiHKAI	GWGCWC	2 cut(s)	95, 230
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	134
BsmAI	GTCTC	4 cut(s)	207, 290, 315, 470
BsmBI	CGTCTC	2 cut(s)	290, 315
BsnI	GGCC	5 cut(s)	5, 80, 116, 159, 372
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	95, 230
BspACI	CCGC	2 cut(s)	58, 212
BspANI	GGCC	5 cut(s)	5, 80, 116, 159, 372
BspCNI	CTCAG	4 cut(s)	270, 324, 484, 493
BspFNI	CGCG	2 cut(s)	272, 599
BspLI	GGNNCC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	556
BspTNI	GGTCTC	1 cut(s)	207
BsrBI	CCGCTC	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	67
BssECI	CCNNGG	1 cut(s)	592
BssNI	GRCGYC	1 cut(s)	557
BssT1I	CCWWGG	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	288
BstACI	GRCGYC	1 cut(s)	557
BstAPI	GCANNNNNTGC	1 cut(s)	454
BstC8I	GCNNGC	3 cut(s)	82, 86, 370
BstDEI	CTNAG	5 cut(s)	98, 278, 332, 471, 480
BstFNI	CGCG	2 cut(s)	272, 599
BstH2I	RGCGCY	1 cut(s)	560
BstHHI	GCGC	2 cut(s)	559, 599
BstMAI	GTCTC	4 cut(s)	207, 290, 315, 470
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 113, 239, 394, 454
BstSCI	CCNGG	1 cut(s)	133
BstSLI	GKGCMC	1 cut(s)	95
BstUI	CGCG	2 cut(s)	272, 599
BstV1I	GCAGC	6 cut(s)	226, 336, 339, 441, 502, 547
BsuI	GTATCC	1 cut(s)	406
BsuRI	GGCC	5 cut(s)	5, 80, 116, 159, 372
BtgZI	GCGATG	2 cut(s)	443, 614
BtsIMutI	CAGTG	1 cut(s)	60
Cac8I	GCNNGC	3 cut(s)	82, 86, 370
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	2 cut(s)	559, 599
CseI	GACGC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	410, 445
CviAII	CATG	1 cut(s)	7
DdeI	CTNAG	5 cut(s)	98, 278, 332, 471, 480
DinI	GGCGCC	1 cut(s)	558
DriI	GACNNNNNGTC	1 cut(s)	279
EaeI	YGGCCR	4 cut(s)	3, 114, 157, 370
Eam1104I	CTCTTC	1 cut(s)	288
Eam1105I	GACNNNNNGTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	288
Eco130I	CCWWGG	1 cut(s)	592
Eco31I	GGTCTC	1 cut(s)	207
Eco57I	CTGAAG	2 cut(s)	20, 455
Eco88I	CYCGRG	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	592
EgeI	GGCGCC	1 cut(s)	558
EheI	GGCGCC	1 cut(s)	558
ErhI	CCWWGG	1 cut(s)	592
Esp3I	CGTCTC	2 cut(s)	290, 315
FaeI	CATG	1 cut(s)	10
FaiI	YATR	4 cut(s)	8, 148, 251, 554
FatI	CATG	1 cut(s)	6
Fnu4HI	GCNGC	8 cut(s)	58, 212, 240, 350, 353, 455, 491, 536
Fsp4HI	GCNGC	8 cut(s)	58, 212, 240, 350, 353, 455, 491, 536
GlaI	GCGC	2 cut(s)	558, 598
GluI	GCNGC	8 cut(s)	58, 212, 240, 350, 353, 455, 491, 536
HaeII	RGCGCY	1 cut(s)	560
HaeIII	GGCC	5 cut(s)	5, 80, 116, 159, 372
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	2 cut(s)	559, 599
Hin1I	GRCGYC	1 cut(s)	557
Hin1II	CATG	1 cut(s)	10
Hin6I	GCGC	2 cut(s)	557, 597
HinP1I	GCGC	2 cut(s)	557, 597
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	173, 246, 280, 478, 574
HpaI	GTTAAC	1 cut(s)	300
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	2 cut(s)	93, 300
Hpy188III	TCNNGA	1 cut(s)	473
Hpy8I	GTNNAC	2 cut(s)	93, 300
Hpy99I	CGWCG	1 cut(s)	277
HpyAV	CCTTC	2 cut(s)	331, 588
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	93, 107, 382, 448, 457, 569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 113, 239, 394, 454
HpyF3I	CTNAG	5 cut(s)	98, 278, 332, 471, 480
HpySE526I	ACGT	1 cut(s)	168
Hsp92I	GRCGYC	1 cut(s)	557
Hsp92II	CATG	1 cut(s)	10
HspAI	GCGC	2 cut(s)	557, 597
KasI	GGCGCC	1 cut(s)	556
KspAI	GTTAAC	1 cut(s)	300
LmnI	GCTCC	3 cut(s)	328, 346, 451
Lsp1109I	GCAGC	6 cut(s)	226, 336, 339, 441, 502, 547
LweI	GCATC	3 cut(s)	435, 466, 601
MaeII	ACGT	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	40
MbiI	CCGCTC	1 cut(s)	214
MboII	GAAGA	4 cut(s)	26, 266, 305, 448
MhlI	GDGCHC	2 cut(s)	95, 230
MlsI	TGGCCA	3 cut(s)	5, 116, 372
MluCI	AATT	1 cut(s)	616
MluNI	TGGCCA	3 cut(s)	5, 116, 372
Mly113I	GGCGCC	1 cut(s)	557
MlyI	GAGTC	3 cut(s)	240, 289, 472
MmeI	TCCRAC	1 cut(s)	390
MnlI	CCTC	5 cut(s)	319, 327, 337, 357, 397
Mox20I	TGGCCA	3 cut(s)	5, 116, 372
MscI	TGGCCA	3 cut(s)	5, 116, 372
MseI	TTAA	2 cut(s)	299, 309
Msp20I	TGGCCA	3 cut(s)	5, 116, 372
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	135
MvnI	CGCG	2 cut(s)	272, 599
MwoI	GCNNNNNNNGC	5 cut(s)	90, 113, 239, 394, 454
NarI	GGCGCC	1 cut(s)	557
NciI	CCSGG	1 cut(s)	135
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	40
PaeR7I	CTCGAG	1 cut(s)	223
PfeI	GAWTC	2 cut(s)	173, 574
PkrI	GCNGC	8 cut(s)	59, 213, 241, 351, 354, 456, 492, 537
PleI	GAGTC	3 cut(s)	240, 288, 472
PluTI	GGCGCC	1 cut(s)	560
PpsI	GAGTC	3 cut(s)	240, 288, 472
PspN4I	GGNNCC	1 cut(s)	558
PspXI	VCTCGAGB	1 cut(s)	223
PstNI	CAGNNNCTG	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	299, 309
SatI	GCNGC	8 cut(s)	58, 212, 240, 350, 353, 455, 491, 536
SchI	GAGTC	3 cut(s)	240, 289, 472
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	2 cut(s)	95, 230
SetI	ASST	9 cut(s)	42, 90, 171, 241, 262, 333, 351, 456, 502
SfaNI	GCATC	3 cut(s)	435, 466, 601
SfoI	GGCGCC	1 cut(s)	558
Sfr274I	CTCGAG	1 cut(s)	223
SlaI	CTCGAG	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	223
SmoI	CTYRAG	1 cut(s)	223
Sse9I	AATT	1 cut(s)	616
SsiI	CCGC	2 cut(s)	58, 212
SspDI	GGCGCC	1 cut(s)	556
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	592
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	1 cut(s)	224
TasI	AATT	1 cut(s)	616
TauI	GCSGC	2 cut(s)	60, 214
TfiI	GAWTC	2 cut(s)	173, 574
Tru1I	TTAA	2 cut(s)	299, 309
Tru9I	TTAA	2 cut(s)	299, 309
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	6 cut(s)	239, 349, 352, 454, 490, 535
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	5 cut(s)	39, 306, 327, 542, 617
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	67
VneI	GTGCAC	1 cut(s)	91
XhoI	CTCGAG	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.