Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0019025

Physical Location & Seq

Genomic Coordinates Reverse (-)

65729413 .. 65730027

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00215110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGAGAAAGATAGAGAATGAAACCAATCTTCAGGTGACATTCTCTAAACGCCGCACTGGTCTGTTCAAAAAGGCCAGCGAGCTGTGCACCATTAGTGGTGCAGAGATGGCCATTGTAGTTTTCTCGCCGGGCAAAAAACCATACTCTTTCGGCCACCCGAATGTAGAATCTATCATTGAGCGTTATCTGTCAGGGTCTCATCAGCCGCTCAACAACTCGAGCACAGCCCAAGCTGCCCGATTCATTGAAGAAGCTAATCGCAACGAGACGCTGAGTCGTCTCAATGAAGAGTTAACTTTGCTTAATGAAATGCGCGACGAGGAGCTGAGGAAGGGCGAGGAGCTGCTGCTGAGGGAGAGGGCTGGCCAACATTTGCATTGGCTAGAAAAGCCAAAGGAGGAGTTGGATACGCAACAACTGATGTGGCTGAAGATGGAGATGCAGGAGCTGCATCGCAGGGTAGCTCAGGAGACTCAATTCAGGCAGCAGTTAGCTCTATTTGATACCACCGGTAACTTGATGAATGAGCAGCACTTCACAAACCCTATGGCGCCATTTTTTGCAGGGATTCCTTCAACTTCAAGCCAAGGCGCGATGAATAACGATGCTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

204

Amino Acids

23.47

Weight (kDa)

5.91

Isoelectric Point (pI)

45.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	3 - 50	3.5e-23	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019025)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0245901
rosa_laevigata	RLG00000015291
rosa_multiflora	Rmu_sc0005570.1_g000010
rosa_roxburghii	Rroxscaffold_7G00215110
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6BG027900 Rh6CG027700 Rh6DG026800
rosa_wichuraiana	Rw6G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	550
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	315, 593
AciI	CCGC	2 cut(s)	52, 206
AcoI	YGGCCR	3 cut(s)	108, 151, 364
AcuI	CTGAAG	2 cut(s)	14, 449
AcyI	GRCGYC	1 cut(s)	551
AgeI	ACCGGT	1 cut(s)	509
AgsI	TTSAA	4 cut(s)	67, 248, 576, 582
AhdI	GACNNNNNGTC	1 cut(s)	273
AluBI	AGCT	8 cut(s)	82, 233, 254, 325, 343, 448, 464, 494
AluI	AGCT	8 cut(s)	82, 233, 254, 325, 343, 448, 464, 494
Alw21I	GWGCWC	2 cut(s)	89, 224
Alw26I	GTCTC	4 cut(s)	201, 260, 284, 464
Alw44I	GTGCAC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	4 cut(s)	72, 108, 151, 364
ApaLI	GTGCAC	1 cut(s)	85
ApeKI	GCWGC	6 cut(s)	233, 343, 346, 448, 484, 529
AsiGI	ACCGGT	1 cut(s)	509
AspLEI	GCGC	3 cut(s)	315, 553, 593
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	1 cut(s)	46
AvaI	CYCGRG	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	89
BalI	TGGCCA	2 cut(s)	110, 366
BanI	GGYRCC	1 cut(s)	550
Bbv12I	GWGCWC	2 cut(s)	89, 224
BbvCI	CCTCAGC	2 cut(s)	326, 350
BbvI	GCAGC	6 cut(s)	220, 330, 333, 435, 496, 541
BccI	CCATC	2 cut(s)	100, 427
BciVI	GTATCC	1 cut(s)	400
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	4 cut(s)	201, 260, 284, 464
BfaI	CTAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	554
BfuI	GTATCC	1 cut(s)	400
BisI	GCNGC	8 cut(s)	52, 206, 234, 344, 347, 449, 485, 530
BlsI	GCNGC	8 cut(s)	53, 207, 235, 345, 348, 450, 486, 531
Bme1390I	CCNGG	1 cut(s)	129
BmeRI	GACNNNNNGTC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	3 cut(s)	429, 460, 595
Bpu10I	CCTNAGC	3 cut(s)	326, 350, 465
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	551
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	586
BsaWI	WCCGGW	1 cut(s)	509
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	586
BseMII	CTCAG	4 cut(s)	263, 317, 341, 479
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	3 cut(s)	335, 353, 413
BseSI	GKGCMC	1 cut(s)	89
BseXI	GCAGC	6 cut(s)	220, 330, 333, 435, 496, 541
BsgI	GTGCAG	1 cut(s)	120
Bsh1236I	CGCG	2 cut(s)	315, 593
BshFI	GGCC	4 cut(s)	74, 110, 153, 366
BshNI	GGYRCC	1 cut(s)	550
BshTI	ACCGGT	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	89, 224
BsiHKCI	CYCGRG	1 cut(s)	217
BsiSI	CCGG	2 cut(s)	128, 510
BsmAI	GTCTC	4 cut(s)	201, 260, 284, 464
BsmBI	CGTCTC	2 cut(s)	260, 284
BsnI	GGCC	4 cut(s)	74, 110, 153, 366
Bso31I	GGTCTC	1 cut(s)	201
BsoBI	CYCGRG	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	89, 224
BspACI	CCGC	2 cut(s)	52, 206
BspANI	GGCC	4 cut(s)	74, 110, 153, 366
BspCNI	CTCAG	4 cut(s)	264, 318, 342, 478
BspFNI	CGCG	2 cut(s)	315, 593
BspLI	GGNNCC	1 cut(s)	552
BspT107I	GGYRCC	1 cut(s)	550
BspTNI	GGTCTC	1 cut(s)	201
BsrBI	CCGCTC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	1 cut(s)	61
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	1 cut(s)	586
BssNI	GRCGYC	1 cut(s)	551
BssT1I	CCWWGG	1 cut(s)	586
Bst6I	CTCTTC	1 cut(s)	282
BstACI	GRCGYC	1 cut(s)	551
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstC8I	GCNNGC	3 cut(s)	76, 80, 364
BstDEI	CTNAG	4 cut(s)	272, 326, 350, 465
BstFNI	CGCG	2 cut(s)	315, 593
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	3 cut(s)	315, 553, 593
BstMAI	GTCTC	4 cut(s)	201, 260, 284, 464
BstMWI	GCNNNNNNNGC	5 cut(s)	84, 107, 233, 388, 448
BstSCI	CCNGG	1 cut(s)	127
BstSLI	GKGCMC	1 cut(s)	89
BstUI	CGCG	2 cut(s)	315, 593
BstV1I	GCAGC	6 cut(s)	220, 330, 333, 435, 496, 541
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	4 cut(s)	74, 110, 153, 366
BtgZI	GCGATG	2 cut(s)	437, 608
BtsIMutI	CAGTG	1 cut(s)	54
Cac8I	GCNNGC	3 cut(s)	76, 80, 364
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	3 cut(s)	315, 553, 593
Cfr10I	RCCGGY	1 cut(s)	509
CseI	GACGC	1 cut(s)	277
CspAI	ACCGGT	1 cut(s)	509
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
DdeI	CTNAG	4 cut(s)	272, 326, 350, 465
DinI	GGCGCC	1 cut(s)	552
DriI	GACNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	3 cut(s)	108, 151, 364
Eam1104I	CTCTTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	1 cut(s)	586
Eco31I	GGTCTC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	14, 449
Eco88I	CYCGRG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	586
EgeI	GGCGCC	1 cut(s)	552
EheI	GGCGCC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	586
Esp3I	CGTCTC	2 cut(s)	260, 284
FaiI	YATR	2 cut(s)	142, 548
Fnu4HI	GCNGC	8 cut(s)	52, 206, 234, 344, 347, 449, 485, 530
Fsp4HI	GCNGC	8 cut(s)	52, 206, 234, 344, 347, 449, 485, 530
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	3 cut(s)	314, 552, 592
GluI	GCNGC	8 cut(s)	52, 206, 234, 344, 347, 449, 485, 530
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	4 cut(s)	74, 110, 153, 366
HapII	CCGG	2 cut(s)	128, 510
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	3 cut(s)	315, 553, 593
Hin1I	GRCGYC	1 cut(s)	551
Hin6I	GCGC	3 cut(s)	313, 551, 591
HinP1I	GCGC	3 cut(s)	313, 551, 591
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HinfI	GANTC	5 cut(s)	167, 240, 274, 472, 568
HpaI	GTTAAC	1 cut(s)	294
HpaII	CCGG	2 cut(s)	128, 510
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	2 cut(s)	87, 294
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	2 cut(s)	87, 294
Hpy99I	CGWCG	1 cut(s)	320
HpyAV	CCTTC	2 cut(s)	325, 582
HpyCH4V	TGCA	6 cut(s)	87, 101, 376, 442, 451, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	84, 107, 233, 388, 448
HpyF3I	CTNAG	4 cut(s)	272, 326, 350, 465
Hsp92I	GRCGYC	1 cut(s)	551
HspAI	GCGC	3 cut(s)	313, 551, 591
KasI	GGCGCC	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	294
LmnI	GCTCC	3 cut(s)	322, 340, 445
Lsp1109I	GCAGC	6 cut(s)	220, 330, 333, 435, 496, 541
LweI	GCATC	3 cut(s)	429, 460, 595
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	34, 512
MbiI	CCGCTC	1 cut(s)	208
MboII	GAAGA	4 cut(s)	20, 260, 299, 442
MhlI	GDGCHC	2 cut(s)	89, 224
MlsI	TGGCCA	2 cut(s)	110, 366
MluCI	AATT	2 cut(s)	476, 610
MluNI	TGGCCA	2 cut(s)	110, 366
Mly113I	GGCGCC	1 cut(s)	551
MlyI	GAGTC	2 cut(s)	283, 466
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	6 cut(s)	313, 321, 331, 345, 351, 391
Mox20I	TGGCCA	2 cut(s)	110, 366
MscI	TGGCCA	2 cut(s)	110, 366
MseI	TTAA	2 cut(s)	293, 303
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	2 cut(s)	110, 366
MspI	CCGG	2 cut(s)	128, 510
MspR9I	CCNGG	1 cut(s)	129
MvnI	CGCG	2 cut(s)	315, 593
MwoI	GCNNNNNNNGC	5 cut(s)	84, 107, 233, 388, 448
NarI	GGCGCC	1 cut(s)	551
NciI	CCSGG	1 cut(s)	129
NlaIV	GGNNCC	1 cut(s)	552
NmuCI	GTSAC	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	217
PfeI	GAWTC	3 cut(s)	167, 240, 568
PinAI	ACCGGT	1 cut(s)	509
PkrI	GCNGC	8 cut(s)	53, 207, 235, 345, 348, 450, 486, 531
PleI	GAGTC	2 cut(s)	282, 466
PluTI	GGCGCC	1 cut(s)	554
PpsI	GAGTC	2 cut(s)	282, 466
PspN4I	GGNNCC	1 cut(s)	552
PspXI	VCTCGAGB	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	293, 303
SatI	GCNGC	8 cut(s)	52, 206, 234, 344, 347, 449, 485, 530
SchI	GAGTC	2 cut(s)	283, 466
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	2 cut(s)	89, 224
SetI	ASST	9 cut(s)	36, 84, 235, 256, 327, 345, 450, 466, 496
SfaNI	GCATC	3 cut(s)	429, 460, 595
SfoI	GGCGCC	1 cut(s)	552
Sfr274I	CTCGAG	1 cut(s)	217
SlaI	CTCGAG	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	217
SmoI	CTYRAG	1 cut(s)	217
Sse9I	AATT	2 cut(s)	476, 610
SsiI	CCGC	2 cut(s)	52, 206
SspDI	GGCGCC	1 cut(s)	550
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	127
StyI	CCWWGG	1 cut(s)	586
TaqI	TCGA	1 cut(s)	218
TasI	AATT	2 cut(s)	476, 610
TauI	GCSGC	2 cut(s)	54, 208
TfiI	GAWTC	3 cut(s)	167, 240, 568
Tru1I	TTAA	2 cut(s)	293, 303
Tru9I	TTAA	2 cut(s)	293, 303
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	6 cut(s)	233, 343, 346, 448, 484, 529
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	6 cut(s)	33, 232, 300, 321, 536, 611
TspRI	CASTG	1 cut(s)	61
VneI	GTGCAC	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	217
XspI	CTAG	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.