Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005570.1

Orthogroup ID

OG0019025

Physical Location & Seq

Genomic Coordinates Reverse (-)

30614 .. 32571

Gene Structure 1958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005570.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

atgccaaggatcagcaggggtcggcgaaagatagccatgagaaagatagagaatgaaaccaatcttcaggtgacattctctaaacgccgcactggtctgttcaaaaaggccagcgagctgtgcacccttagtggtgcagagatggccattgtagtattctcgccgggcaaaaaaccatactctttcggccacccgaatgtagattctatcattgagcgttatctgtcagggtctcatcagccgctcaacaactcgagcacagcccaagctgcccgactcattgaagaagctaatcgcaacgcgacgctgagtcgtcttaatgaagagttggctttgcttaatgaaatgcgcgacgaggagctgaggaagggcgaggagctgctgctgagggagagggctggccaacatttgcattggcaagaaaagccaaaggaggagttggatatgcaacaactgatgtggctgaagatggagatgcaggagctgcatcgcagggtagctcaggagactcagttcaggcagcagttagctctatttgataccaccaataacttgatgaatgagcagcagttcacaaaccctatggcgccattttttgcagggattccttcaacttcaagccaaggcgcgatgaataacgatgccaccatctcaccacaccgccaccataaatccgatccaagcccgaacctcaccacaaacatgcaccgccggcaacctccacacgtgaccaccaaagttgcgacaccactgcattccttaatcccccgatttccagtcgctgattcacaccaccactaccttcaatttaagcaccaagccctagaaagccaaaacaagaaccatagccttcaatcccaacgtcgaacaacattgtacaagcatcgccggaggtctcagctctgcatgccttcattctccgatctccgaacctctgactctgaccagagcggccacacgggcttcacgctccaccactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04010 ko04013 ko04022 ko04371 ko04921 ko05202 ko05418 map04010 map04013 map04022 map04371 map04921 map05202 map05418

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

326

Amino Acids

37.65

Weight (kDa)

9.83

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019025)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0245901
rosa_laevigata	RLG00000015291
rosa_multiflora	Rmu_sc0005570.1_g000010
rosa_roxburghii	Rroxscaffold_7G00215110
rosa_rugosa	Rorug05G0516400
rosa_samantha	Rh6BG027900 Rh6CG027700 Rh6DG026800
rosa_wichuraiana	Rw6G002640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	586
AccBSI	CCGCTC	2 cut(s)	244, 951
AccII	CGCG	3 cut(s)	302, 351, 629
AciI	CCGC	5 cut(s)	88, 242, 661, 709, 951
AclWI	GGATC	2 cut(s)	17, 671
AcoI	YGGCCR	4 cut(s)	144, 187, 400, 952
AcuI	CTGAAG	2 cut(s)	50, 485
AcvI	CACGTG	1 cut(s)	727
AcyI	GRCGYC	1 cut(s)	587
AfaI	GTAC	1 cut(s)	878
AflIII	ACRYGT	1 cut(s)	724
AgsI	TTSAA	6 cut(s)	103, 284, 612, 618, 806, 854
AhdI	GACNNNNNGTC	1 cut(s)	309
AloI	GAACNNNNNNTCC	2 cut(s)	497, 529
AluBI	AGCT	9 cut(s)	118, 269, 290, 361, 379, 484, 500, 530, 901
AluI	AGCT	9 cut(s)	118, 269, 290, 361, 379, 484, 500, 530, 901
Alw21I	GWGCWC	2 cut(s)	125, 260
Alw26I	GTCTC	3 cut(s)	237, 500, 900
Alw44I	GTGCAC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	17, 671
AlwNI	CAGNNNCTG	2 cut(s)	484, 782
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	5 cut(s)	108, 144, 187, 400, 952
ApaLI	GTGCAC	1 cut(s)	121
ApeKI	GCWGC	6 cut(s)	269, 379, 382, 484, 520, 565
AspLEI	GCGC	3 cut(s)	351, 589, 629
AsuC2I	CCSGG	1 cut(s)	165
AsuHPI	GGTGA	3 cut(s)	82, 645, 685
AvaI	CYCGRG	1 cut(s)	253
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	2 cut(s)	146, 402
BanI	GGYRCC	1 cut(s)	586
BbrPI	CACGTG	1 cut(s)	727
Bbv12I	GWGCWC	2 cut(s)	125, 260
BbvCI	CCTCAGC	2 cut(s)	362, 386
BbvI	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BccI	CCATC	3 cut(s)	136, 463, 656
BcgI	CGANNNNNNTGC	2 cut(s)	733, 767
BcnI	CCSGG	1 cut(s)	165
BcoDI	GTCTC	3 cut(s)	237, 500, 900
BfaI	CTAG	2 cut(s)	824, 979
BfoI	RGCGCY	1 cut(s)	590
BglI	GCCNNNNNGGC	1 cut(s)	960
BisI	GCNGC	9 cut(s)	88, 242, 270, 380, 383, 485, 521, 566, 952
BlsI	GCNGC	9 cut(s)	89, 243, 271, 381, 384, 486, 522, 567, 953
Bme1390I	CCNGG	1 cut(s)	165
BmeRI	GACNNNNNGTC	1 cut(s)	309
BmeT110I	CYCGRG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	4 cut(s)	465, 496, 631, 892
Bpu10I	CCTNAGC	3 cut(s)	362, 386, 501
BpuMI	CCSGG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	727
BsaHI	GRCGYC	1 cut(s)	587
BsaI	GGTCTC	2 cut(s)	237, 900
BsaJI	CCNNGG	2 cut(s)	5, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bse118I	RCCGGY	1 cut(s)	711
Bse1I	ACTGG	2 cut(s)	97, 776
BseDI	CCNNGG	2 cut(s)	5, 622
BseMII	CTCAG	6 cut(s)	299, 353, 377, 515, 524, 911
BseNI	ACTGG	2 cut(s)	97, 776
BseRI	GAGGAG	3 cut(s)	371, 389, 449
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BsgI	GTGCAG	1 cut(s)	156
Bsh1236I	CGCG	3 cut(s)	302, 351, 629
BshFI	GGCC	5 cut(s)	110, 146, 189, 402, 954
BshNI	GGYRCC	1 cut(s)	586
BsiHKAI	GWGCWC	2 cut(s)	125, 260
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	164, 712, 889
BsmAI	GTCTC	3 cut(s)	237, 500, 900
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	5 cut(s)	110, 146, 189, 402, 954
Bso31I	GGTCTC	2 cut(s)	237, 900
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	125, 260
Bsp1407I	TGTACA	1 cut(s)	876
Bsp143I	GATC	3 cut(s)	9, 676, 922
BspACI	CCGC	5 cut(s)	88, 242, 661, 709, 951
BspANI	GGCC	5 cut(s)	110, 146, 189, 402, 954
BspCNI	CTCAG	6 cut(s)	300, 354, 378, 514, 523, 910
BspFNI	CGCG	3 cut(s)	302, 351, 629
BspLI	GGNNCC	1 cut(s)	588
BspPI	GGATC	2 cut(s)	17, 671
BspT107I	GGYRCC	1 cut(s)	586
BspTNI	GGTCTC	2 cut(s)	237, 900
BsrBI	CCGCTC	2 cut(s)	244, 951
BsrFI	RCCGGY	1 cut(s)	711
BsrGI	TGTACA	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	97, 776
BssAI	RCCGGY	1 cut(s)	711
BssECI	CCNNGG	2 cut(s)	5, 622
BssMI	GATC	3 cut(s)	9, 676, 922
BssNI	GRCGYC	1 cut(s)	587
BssT1I	CCWWGG	2 cut(s)	5, 622
Bst6I	CTCTTC	1 cut(s)	318
BstACI	GRCGYC	1 cut(s)	587
BstAPI	GCANNNNNTGC	1 cut(s)	484
BstAUI	TGTACA	1 cut(s)	876
BstBAI	YACGTR	1 cut(s)	727
BstC8I	GCNNGC	5 cut(s)	112, 116, 400, 713, 908
BstDEI	CTNAG	7 cut(s)	128, 308, 362, 386, 501, 510, 897
BstFNI	CGCG	3 cut(s)	302, 351, 629
BstH2I	RGCGCY	1 cut(s)	590
BstHHI	GCGC	3 cut(s)	351, 589, 629
BstKTI	GATC	3 cut(s)	12, 679, 925
BstMAI	GTCTC	3 cut(s)	237, 500, 900
BstMBI	GATC	3 cut(s)	9, 676, 922
BstMWI	GCNNNNNNNGC	8 cut(s)	120, 143, 269, 424, 484, 712, 907, 960
BstNSI	RCATGY	2 cut(s)	706, 910
BstSCI	CCNGG	1 cut(s)	163
BstSLI	GKGCMC	1 cut(s)	125
BstUI	CGCG	3 cut(s)	302, 351, 629
BstV1I	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
BsuRI	GGCC	5 cut(s)	110, 146, 189, 402, 954
BtgZI	GCGATG	3 cut(s)	473, 644, 869
BtsI	GCAGTG	1 cut(s)	749
BtsIMutI	CAGTG	2 cut(s)	90, 749
Cac8I	GCNNGC	5 cut(s)	112, 116, 400, 713, 908
CaiI	CAGNNNCTG	2 cut(s)	484, 782
CfoI	GCGC	3 cut(s)	351, 589, 629
Cfr10I	RCCGGY	1 cut(s)	711
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	1 cut(s)	877
CspCI	CAANNNNNGTGG	4 cut(s)	440, 475, 721, 756
CviAII	CATG	3 cut(s)	37, 703, 907
CviQI	GTAC	1 cut(s)	877
DdeI	CTNAG	7 cut(s)	128, 308, 362, 386, 501, 510, 897
DinI	GGCGCC	1 cut(s)	588
DpnI	GATC	3 cut(s)	11, 678, 924
DpnII	GATC	3 cut(s)	9, 676, 922
DriI	GACNNNNNGTC	1 cut(s)	309
EaeI	YGGCCR	4 cut(s)	144, 187, 400, 952
Eam1104I	CTCTTC	1 cut(s)	318
Eam1105I	GACNNNNNGTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	2 cut(s)	5, 622
Eco31I	GGTCTC	2 cut(s)	237, 900
Eco57I	CTGAAG	2 cut(s)	50, 485
Eco72I	CACGTG	1 cut(s)	727
Eco88I	CYCGRG	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	5, 622
EgeI	GGCGCC	1 cut(s)	588
EheI	GGCGCC	1 cut(s)	588
ErhI	CCWWGG	2 cut(s)	5, 622
FaeI	CATG	3 cut(s)	40, 706, 910
FaiI	YATR	8 cut(s)	38, 178, 446, 584, 669, 704, 846, 908
FatI	CATG	3 cut(s)	36, 702, 906
Fnu4HI	GCNGC	9 cut(s)	88, 242, 270, 380, 383, 485, 521, 566, 952
Fsp4HI	GCNGC	9 cut(s)	88, 242, 270, 380, 383, 485, 521, 566, 952
FspBI	CTAG	2 cut(s)	824, 979
GlaI	GCGC	3 cut(s)	350, 588, 628
GluI	GCNGC	9 cut(s)	88, 242, 270, 380, 383, 485, 521, 566, 952
HaeII	RGCGCY	1 cut(s)	590
HaeIII	GGCC	5 cut(s)	110, 146, 189, 402, 954
HapII	CCGG	3 cut(s)	164, 712, 889
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	3 cut(s)	351, 589, 629
Hin1I	GRCGYC	1 cut(s)	587
Hin1II	CATG	3 cut(s)	40, 706, 910
Hin6I	GCGC	3 cut(s)	349, 587, 627
HinP1I	GCGC	3 cut(s)	349, 587, 627
HinfI	GANTC	7 cut(s)	203, 276, 310, 508, 604, 785, 938
HpaII	CCGG	3 cut(s)	164, 712, 889
HphI	GGTGA	3 cut(s)	82, 645, 685
Hpy166II	GTNNAC	2 cut(s)	123, 573
Hpy188I	TCNGA	5 cut(s)	676, 922, 929, 937, 943
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	2 cut(s)	123, 573
Hpy99I	CGWCG	3 cut(s)	307, 356, 867
HpyAV	CCTTC	5 cut(s)	361, 618, 812, 860, 921
HpyCH4IV	ACGT	2 cut(s)	726, 862
HpyF10VI	GCNNNNNNNGC	8 cut(s)	120, 143, 269, 424, 484, 712, 907, 960
HpyF3I	CTNAG	7 cut(s)	128, 308, 362, 386, 501, 510, 897
HpySE526I	ACGT	2 cut(s)	726, 862
Hsp92I	GRCGYC	1 cut(s)	587
Hsp92II	CATG	3 cut(s)	40, 706, 910
HspAI	GCGC	3 cut(s)	349, 587, 627
KasI	GGCGCC	1 cut(s)	586
KroI	GCCGGC	1 cut(s)	711
KroNI	GCCGGC	1 cut(s)	713
Kzo9I	GATC	3 cut(s)	9, 676, 922
LmnI	GCTCC	4 cut(s)	358, 376, 481, 975
Lsp1109I	GCAGC	6 cut(s)	256, 366, 369, 471, 532, 577
LweI	GCATC	4 cut(s)	465, 496, 631, 892
MaeI	CTAG	2 cut(s)	824, 979
MaeII	ACGT	2 cut(s)	726, 862
MaeIII	GTNAC	2 cut(s)	70, 727
MalI	GATC	3 cut(s)	11, 678, 924
MbiI	CCGCTC	2 cut(s)	244, 951
MboI	GATC	3 cut(s)	9, 676, 922
MboII	GAAGA	4 cut(s)	56, 296, 335, 478
MhlI	GDGCHC	2 cut(s)	125, 260
MlsI	TGGCCA	2 cut(s)	146, 402
MluCI	AATT	1 cut(s)	806
MluNI	TGGCCA	2 cut(s)	146, 402
Mly113I	GGCGCC	1 cut(s)	587
MlyI	GAGTC	4 cut(s)	270, 319, 502, 932
MmeI	TCCRAC	1 cut(s)	420
Mox20I	TGGCCA	2 cut(s)	146, 402
MroNI	GCCGGC	1 cut(s)	711
MscI	TGGCCA	2 cut(s)	146, 402
MseI	TTAA	4 cut(s)	318, 339, 761, 810
MslI	CAYNNNNRTG	2 cut(s)	195, 701
Msp20I	TGGCCA	2 cut(s)	146, 402
MspI	CCGG	3 cut(s)	164, 712, 889
MspR9I	CCNGG	1 cut(s)	165
Mva1269I	GAATGC	1 cut(s)	754
MvnI	CGCG	3 cut(s)	302, 351, 629
MwoI	GCNNNNNNNGC	8 cut(s)	120, 143, 269, 424, 484, 712, 907, 960
NaeI	GCCGGC	1 cut(s)	713
NarI	GGCGCC	1 cut(s)	587
NciI	CCSGG	1 cut(s)	165
NdeII	GATC	3 cut(s)	9, 676, 922
NgoMIV	GCCGGC	1 cut(s)	711
NlaIII	CATG	3 cut(s)	40, 706, 910
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	2 cut(s)	70, 727
NspI	RCATGY	2 cut(s)	706, 910
PaeI	GCATGC	1 cut(s)	910
PaeR7I	CTCGAG	1 cut(s)	253
PctI	GAATGC	1 cut(s)	754
PdiI	GCCGGC	1 cut(s)	713
PfeI	GAWTC	3 cut(s)	203, 604, 785
PkrI	GCNGC	9 cut(s)	89, 243, 271, 381, 384, 486, 522, 567, 953
PleI	GAGTC	4 cut(s)	270, 318, 502, 932
PluTI	GGCGCC	1 cut(s)	590
PmaCI	CACGTG	1 cut(s)	727
PmlI	CACGTG	1 cut(s)	727
PpsI	GAGTC	4 cut(s)	270, 318, 502, 932
Ppu21I	YACGTR	1 cut(s)	727
PspCI	CACGTG	1 cut(s)	727
PspN4I	GGNNCC	1 cut(s)	588
PspXI	VCTCGAGB	1 cut(s)	253
PstNI	CAGNNNCTG	2 cut(s)	484, 782
RsaI	GTAC	1 cut(s)	878
RsaNI	GTAC	1 cut(s)	877
RseI	CAYNNNNRTG	2 cut(s)	195, 701
SaqAI	TTAA	4 cut(s)	318, 339, 761, 810
SatI	GCNGC	9 cut(s)	88, 242, 270, 380, 383, 485, 521, 566, 952
Sau3AI	GATC	3 cut(s)	9, 676, 922
SchI	GAGTC	4 cut(s)	270, 319, 502, 932
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	2 cut(s)	125, 260
SfaNI	GCATC	4 cut(s)	465, 496, 631, 892
SfoI	GGCGCC	1 cut(s)	588
Sfr274I	CTCGAG	1 cut(s)	253
SlaI	CTCGAG	1 cut(s)	253
SmiMI	CAYNNNNRTG	2 cut(s)	195, 701
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
SphI	GCATGC	1 cut(s)	910
Sse9I	AATT	1 cut(s)	806
SsiI	CCGC	5 cut(s)	88, 242, 661, 709, 951
SspDI	GGCGCC	1 cut(s)	586
SspMI	CTAG	2 cut(s)	824, 979
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	2 cut(s)	5, 622
TaiI	ACGT	2 cut(s)	729, 865
TaqI	TCGA	2 cut(s)	254, 865
TasI	AATT	1 cut(s)	806
TatI	WGTACW	1 cut(s)	876
TauI	GCSGC	3 cut(s)	90, 244, 954
TfiI	GAWTC	3 cut(s)	203, 604, 785
Tru1I	TTAA	4 cut(s)	318, 339, 761, 810
Tru9I	TTAA	4 cut(s)	318, 339, 761, 810
TscAI	CASTG	2 cut(s)	97, 756
TseFI	GTSAC	2 cut(s)	70, 727
TseI	GCWGC	6 cut(s)	269, 379, 382, 484, 520, 565
Tsp45I	GTSAC	2 cut(s)	70, 727
TspDTI	ATGAA	6 cut(s)	69, 336, 357, 572, 647, 903
TspRI	CASTG	2 cut(s)	97, 756
VneI	GTGCAC	1 cut(s)	121
XceI	RCATGY	2 cut(s)	706, 910
XhoI	CTCGAG	1 cut(s)	253
XspI	CTAG	2 cut(s)	824, 979

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.