RLG00000015323
HSP70 Family

Heat shock cognate 70 kDa

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
64557238 .. 64557926
689 bp
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UTR
Exon/CDS
Intron
RLM00000015323

Sequence Viewer

Length: 477 bp
ATGAAGTTTCAAACGTGTAAGGATGCAAAGCGACTGATTGGCAGGAAATTTAGTGATACATGTGTTAAGAGTGATATGAAATTATGGCCTTTCAAGGTTCGTGGTGTGGGTGACAAGCCTATGATTATGATCAACTACAAGAATGAAAAGAAACAAGTTGCCGCTGAGGAGATATCTTCAATGATTCTCCATAAGATGCGCGAAATTACAGAGGCCTATCTTGGACTAACAATAAAGAATGTTTTTATAACTGTACTAGCATACTTCAATGACTCTCAACGACACGCTACAAAAGATGCTGGGGTAATTGCAGGCATGAATGTGATGCGTATTCTTAATGAGCCAACAGCCGCAGCTATTGCATATGGTCTTGACAAAAAGGCCACGACTATCGGTGGTAAAATTGTTCTCATATTCGATCTTGGTGGTGGTACTTTTGATGTTTCCCTTCTTAAAATTGAAGATGAGATTTTTTAG
Functional Annotation

Protein Analysis

159

Amino Acids

17.65

Weight (kDa)

9.3

Isoelectric Point (pI)

31.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 4 - 157 1.2e-58 Hsp70 protein
MreB_Mbl PF06723 58 - 154 2e-06 MreB/Mbl protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0022525)

Species Orthologous Gene IDs
pyrus_communis pycom01g15360
rosa_laevigata RLG00000003667 RLG00000015323
rosa_samantha Rh7AG190400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 162, 351
AcsI RAATTY 1 cut(s) 47
AfaI GTAC 2 cut(s) 255, 433
AflIII ACRYGT 2 cut(s) 14, 59
AgsI TTSAA 5 cut(s) 11, 94, 180, 268, 461
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
AoxI GGCC 3 cut(s) 86, 213, 381
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 47
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 1 cut(s) 122
BaeI ACNNNNGTAYC 2 cut(s) 48, 81
BbvCI CCTCAGC 1 cut(s) 165
BbvI GCAGC 1 cut(s) 365
BclI TGATCA 1 cut(s) 129
BfaI CTAG 1 cut(s) 257
BisI GCNGC 3 cut(s) 162, 351, 354
BlsI GCNGC 3 cut(s) 163, 352, 355
BmsI GCATC 4 cut(s) 13, 186, 286, 315
Bpu10I CCTNAGC 1 cut(s) 165
BsaBI GATNNNNATC 1 cut(s) 128
Bse8I GATNNNNATC 1 cut(s) 128
BseGI GGATG 1 cut(s) 28
BseJI GATNNNNATC 1 cut(s) 128
BseMII CTCAG 1 cut(s) 156
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 365
BseYI CCCAGC 1 cut(s) 299
Bsh1236I CGCG 1 cut(s) 201
BshFI GGCC 3 cut(s) 88, 215, 383
BsnI GGCC 3 cut(s) 88, 215, 383
Bsp143I GATC 2 cut(s) 129, 418
BspACI CCGC 2 cut(s) 162, 351
BspANI GGCC 3 cut(s) 88, 215, 383
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 201
BssMI GATC 2 cut(s) 129, 418
Bst4CI ACNGT 1 cut(s) 253
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 132, 421
BstMBI GATC 2 cut(s) 129, 418
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 63
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 1 cut(s) 365
BsuRI GGCC 3 cut(s) 88, 215, 383
BtsCI GGATG 1 cut(s) 28
Cac8I GCNNGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 2 cut(s) 254, 432
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviAII CATG 2 cut(s) 60, 316
CviJI RGCY 7 cut(s) 88, 118, 215, 343, 350, 356, 383
CviKI_1 RGCY 7 cut(s) 88, 118, 215, 343, 350, 356, 383
CviQI GTAC 2 cut(s) 254, 432
DdeI CTNAG 1 cut(s) 165
DpnI GATC 2 cut(s) 131, 420
DpnII GATC 2 cut(s) 129, 418
Eco147I AGGCCT 1 cut(s) 215
Eco32I GATATC 1 cut(s) 174
EcoRV GATATC 1 cut(s) 174
FaeI CATG 2 cut(s) 63, 319
FatI CATG 2 cut(s) 59, 315
FauNDI CATATG 1 cut(s) 364
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 162, 351, 354
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 3 cut(s) 162, 351, 354
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 200
GluI GCNGC 3 cut(s) 162, 351, 354
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 3 cut(s) 88, 215, 383
HhaI GCGC 1 cut(s) 201
Hin1II CATG 2 cut(s) 63, 319
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 2 cut(s) 184, 272
HphI GGTGA 1 cut(s) 122
Hpy188III TCNNGA 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 458
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 14
HpyCH4V TGCA 3 cut(s) 26, 311, 362
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 14
Hsp92II CATG 2 cut(s) 63, 319
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 129
Kzo9I GATC 2 cut(s) 129, 418
LpnPI CCDG 3 cut(s) 28, 285, 297
Lsp1109I GCAGC 1 cut(s) 365
LweI GCATC 4 cut(s) 13, 186, 286, 315
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 14
MaeIII GTNAC 1 cut(s) 110
MalI GATC 2 cut(s) 131, 420
MboI GATC 2 cut(s) 129, 418
MboII GAAGA 2 cut(s) 168, 473
MluCI AATT 6 cut(s) 47, 80, 204, 306, 402, 456
MlyI GAGTC 1 cut(s) 266
MnlI CCTC 2 cut(s) 160, 205
MseI TTAA 3 cut(s) 66, 336, 453
MslI CAYNNNNRTG 1 cut(s) 320
MspA1I CMGCKG 1 cut(s) 164
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 1 cut(s) 364
NdeII GATC 2 cut(s) 129, 418
NlaIII CATG 2 cut(s) 63, 319
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 63
PceI AGGCCT 1 cut(s) 215
PciI ACATGT 1 cut(s) 59
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 3 cut(s) 163, 352, 355
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
PscI ACATGT 1 cut(s) 59
PsiI TTATAA 1 cut(s) 248
PspFI CCCAGC 1 cut(s) 299
RsaI GTAC 2 cut(s) 255, 433
RsaNI GTAC 2 cut(s) 254, 432
RseI CAYNNNNRTG 1 cut(s) 320
SaqAI TTAA 3 cut(s) 66, 336, 453
SatI GCNGC 3 cut(s) 162, 351, 354
Sau3AI GATC 2 cut(s) 129, 418
SchI GAGTC 1 cut(s) 266
SetI ASST 3 cut(s) 17, 99, 358
SfaNI GCATC 4 cut(s) 13, 186, 286, 315
SmiMI CAYNNNNRTG 1 cut(s) 320
Sse9I AATT 6 cut(s) 47, 80, 204, 306, 402, 456
SseBI AGGCCT 1 cut(s) 215
SsiI CCGC 2 cut(s) 162, 351
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 215
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 417
TasI AATT 6 cut(s) 47, 80, 204, 306, 402, 456
TatI WGTACW 1 cut(s) 253
TauI GCSGC 2 cut(s) 164, 353
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 3 cut(s) 66, 336, 453
Tru9I TTAA 3 cut(s) 66, 336, 453
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 17, 92, 159, 332
XapI RAATTY 1 cut(s) 47
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.