Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0022525

Physical Location & Seq

Genomic Coordinates Reverse (-)

17070613 .. 17071935

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG190400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTATGGTGGCAAAAGGCAATGGTCCAGCGATAGAAATTGATCTTGGAACAACTTACTCATGCGTTGGTGTTTGGCAACATGGGCGCGTTGAAATCATAACCAATGATCAGGGCAATATAATAACACCGTCATATGTTGCTTTTACAAACACCGGACGTTTAATTGGTGATGCAGCTAAGAACCAAGTCTCAATGAACCCCTTCAACACTGTTTTTGATGCAAAGTGCTTGATTGGAAGAAGATTTAGTGATGTAAATGTCAAAAATGACATGAAATTATGGCCTTTCAAGGTTCGTAGAGTTGGGGACAAACCCATGATTATGATCAATTATAAGAATGAAAAAAAGCAATTTGCCGCTGAGGAGATATTTGCAATGGTTCTCAATAAGATGCGTGAAATAGCAGAGGCCTACATCAGATTGACAGTAAAGAATGTCGTTATCACTGTCCCAGCATACTTTAATGACTTACAAGGTCAGGCCACAAAGGATGCCAGTGTAATTGCAGGAATGAATGTTATTCGTATTATCAACGAGCCAACAACTGCGGCCATTGCCTACGGTCTTGATAGAAAAGGCACCAATATTGCTGGAAAAAACGTTCTTATTTTTTATCTTGGTGGTGGTACTTTCGATGTTTCCCTTCTTAAAATTGAAGAAGGTATTTTTGAGGTGAAGGCTACAGCTGGTGATACTCATCTTGGGGGTGAAGATTTTGATAATAGAATGGAGCTTTGCAAAAGTATCAATCCGGATGAAATAGTTGCATATGGTGCCTCTATACAAGCTCTAATTTTGAACGGTGAAGAAAAATATCGAGAAGGTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002020 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009620 GO:0009628 GO:0009987 GO:0010029 GO:0010035 GO:0010038 GO:0010118 GO:0010187 GO:0012505 GO:0016020 GO:0019899 GO:0022626 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0090332 GO:0098542 GO:0098588 GO:0098805 GO:1900140 GO:1990904 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko03040 ko04010 ko04141 ko04144 ko04213 ko04612 ko04915 ko05134 ko05145 ko05162 ko05164 ko05169 map03040 map04010 map04141 map04144 map04213 map04612 map04915 map05134 map05145 map05162 map05164 map05169

Pfam Domains

Protein Families

HSP70 MreB_Mbl

Protein Analysis

277

Amino Acids

30.47

Weight (kDa)

6.2

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP70	PF00012	12 - 244	2.4e-100	Hsp70 protein
MreB_Mbl	PF06723	127 - 242	7.2e-08	MreB/Mbl protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022525)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g15360
rosa_laevigata	RLG00000003667 RLG00000015323
rosa_samantha	Rh7AG190400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AccB1I	GGYRCC	2 cut(s)	581, 776
AccII	CGCG	1 cut(s)	90
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	2 cut(s)	360, 551
AclI	AACGTT	1 cut(s)	603
AcoI	YGGCCR	1 cut(s)	552
AfaI	GTAC	1 cut(s)	631
AgsI	TTSAA	5 cut(s)	95, 208, 292, 659, 802
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AloI	GAACNNNNNNTCC	2 cut(s)	588, 620
AluBI	AGCT	4 cut(s)	179, 689, 736, 791
AluI	AGCT	4 cut(s)	179, 689, 736, 791
Alw26I	GTCTC	1 cut(s)	196
Aor13HI	TCCGGA	1 cut(s)	754
AoxI	GGCC	4 cut(s)	284, 411, 483, 552
ApeKI	GCWGC	1 cut(s)	176
Asp700I	GAANNNNTTC	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	90
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	5 cut(s)	182, 688, 704, 722, 818
AvaII	GGWCC	1 cut(s)	26
BanI	GGYRCC	2 cut(s)	581, 776
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	188
BclI	TGATCA	2 cut(s)	109, 327
BcoDI	GTCTC	1 cut(s)	196
BfmI	CTRYAG	1 cut(s)	684
BisI	GCNGC	3 cut(s)	177, 360, 552
BlsI	GCNGC	3 cut(s)	178, 361, 553
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	2 cut(s)	583, 778
BmsI	GCATC	4 cut(s)	163, 211, 384, 484
Bpu10I	CCTNAGC	1 cut(s)	363
BsaBI	GATNNNNATC	2 cut(s)	326, 699
BsaWI	WCCGGW	2 cut(s)	155, 754
Bse1I	ACTGG	1 cut(s)	498
Bse3DI	GCAATG	3 cut(s)	28, 384, 555
Bse8I	GATNNNNATC	2 cut(s)	326, 699
BseAI	TCCGGA	1 cut(s)	754
BseGI	GGATG	2 cut(s)	499, 763
BseJI	GATNNNNATC	2 cut(s)	326, 699
BseMI	GCAATG	3 cut(s)	28, 384, 555
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	454
Bsh1236I	CGCG	1 cut(s)	90
BshFI	GGCC	4 cut(s)	286, 413, 485, 554
BshNI	GGYRCC	2 cut(s)	581, 776
BsiSI	CCGG	2 cut(s)	156, 755
BslFI	GGGAC	2 cut(s)	323, 437
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	323, 437
BsnI	GGCC	4 cut(s)	286, 413, 485, 554
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	3 cut(s)	43, 109, 327
BspACI	CCGC	2 cut(s)	360, 551
BspANI	GGCC	4 cut(s)	286, 413, 485, 554
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	90
BspHI	TCATGA	1 cut(s)	830
BspLI	GGNNCC	2 cut(s)	583, 778
BspT107I	GGYRCC	2 cut(s)	581, 776
BsrDI	GCAATG	3 cut(s)	28, 384, 555
BsrI	ACTGG	1 cut(s)	498
BssMI	GATC	3 cut(s)	43, 109, 327
Bst4CI	ACNGT	6 cut(s)	132, 214, 430, 451, 566, 806
BstAPI	GCANNNNNTGC	1 cut(s)	776
BstDEI	CTNAG	2 cut(s)	180, 363
BstF5I	GGATG	2 cut(s)	499, 763
BstFNI	CGCG	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	3 cut(s)	46, 112, 330
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	43, 109, 327
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 85, 557, 776
BstSFI	CTRYAG	1 cut(s)	684
BstUI	CGCG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	188
BsuRI	GGCC	4 cut(s)	286, 413, 485, 554
BtsCI	GGATG	2 cut(s)	499, 763
BtsIMutI	CAGTG	3 cut(s)	210, 447, 505
CciI	TCATGA	1 cut(s)	830
CfoI	GCGC	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	630
CviAII	CATG	5 cut(s)	63, 83, 274, 319, 831
CviQI	GTAC	1 cut(s)	630
DdeI	CTNAG	2 cut(s)	180, 363
DpnI	GATC	3 cut(s)	45, 111, 329
DpnII	GATC	3 cut(s)	43, 109, 327
EaeI	YGGCCR	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	26
FaeI	CATG	5 cut(s)	66, 86, 277, 322, 834
FaqI	GGGAC	2 cut(s)	323, 437
FatI	CATG	5 cut(s)	62, 82, 273, 318, 830
FauNDI	CATATG	2 cut(s)	136, 772
FbaI	TGATCA	2 cut(s)	109, 327
Fnu4HI	GCNGC	3 cut(s)	177, 360, 552
FokI	GGATG	2 cut(s)	506, 770
Fsp4HI	GCNGC	3 cut(s)	177, 360, 552
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	3 cut(s)	177, 360, 552
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	4 cut(s)	286, 413, 485, 554
HapII	CCGG	2 cut(s)	156, 755
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	5 cut(s)	66, 86, 277, 322, 834
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HpaII	CCGG	2 cut(s)	156, 755
HphI	GGTGA	5 cut(s)	182, 688, 704, 722, 818
Hpy188I	TCNGA	1 cut(s)	422
Hpy188III	TCNNGA	4 cut(s)	569, 755, 821, 831
HpyAV	CCTTC	5 cut(s)	214, 656, 656, 673, 818
HpyCH4III	ACNGT	6 cut(s)	132, 214, 430, 451, 566, 806
HpyCH4IV	ACGT	2 cut(s)	160, 603
HpyCH4V	TGCA	6 cut(s)	176, 224, 377, 509, 741, 770
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 85, 557, 776
HpyF3I	CTNAG	2 cut(s)	180, 363
HpySE526I	ACGT	2 cut(s)	160, 603
Hsp92II	CATG	5 cut(s)	66, 86, 277, 322, 834
HspAI	GCGC	1 cut(s)	88
Kpn2I	TCCGGA	1 cut(s)	754
Ksp22I	TGATCA	2 cut(s)	109, 327
Kzo9I	GATC	3 cut(s)	43, 109, 327
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	4 cut(s)	163, 211, 384, 484
MaeII	ACGT	2 cut(s)	160, 603
MalI	GATC	3 cut(s)	45, 111, 329
MboI	GATC	3 cut(s)	43, 109, 327
MboII	GAAGA	5 cut(s)	252, 255, 671, 725, 821
MluCI	AATT	8 cut(s)	39, 165, 278, 331, 353, 504, 654, 795
MnlI	CCTC	4 cut(s)	358, 403, 667, 790
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	203
MseI	TTAA	3 cut(s)	164, 465, 651
MslI	CAYNNNNRTG	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	362, 689
MspI	CCGG	2 cut(s)	156, 755
MvnI	CGCG	1 cut(s)	90
MwoI	GCNNNNNNNGC	4 cut(s)	11, 85, 557, 776
NdeI	CATATG	2 cut(s)	136, 772
NdeII	GATC	3 cut(s)	43, 109, 327
NlaIII	CATG	5 cut(s)	66, 86, 277, 322, 834
NlaIV	GGNNCC	2 cut(s)	583, 778
PagI	TCATGA	1 cut(s)	830
PceI	AGGCCT	1 cut(s)	413
PdmI	GAANNNNTTC	1 cut(s)	203
PkrI	GCNGC	3 cut(s)	178, 361, 553
PsiI	TTATAA	1 cut(s)	336
Psp1406I	AACGTT	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	583, 778
PspPI	GGNCC	1 cut(s)	26
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	631
RsaNI	GTAC	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	323
SaqAI	TTAA	3 cut(s)	164, 465, 651
SatI	GCNGC	3 cut(s)	177, 360, 552
Sau3AI	GATC	3 cut(s)	43, 109, 327
Sau96I	GGNCC	1 cut(s)	26
SfaNI	GCATC	4 cut(s)	163, 211, 384, 484
SfcI	CTRYAG	1 cut(s)	684
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	8 cut(s)	39, 165, 278, 331, 353, 504, 654, 795
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	2 cut(s)	360, 551
SspI	AATATT	1 cut(s)	589
StuI	AGGCCT	1 cut(s)	413
TaaI	ACNGT	6 cut(s)	132, 214, 430, 451, 566, 806
TaiI	ACGT	2 cut(s)	163, 606
TaqI	TCGA	2 cut(s)	636, 820
TasI	AATT	8 cut(s)	39, 165, 278, 331, 353, 504, 654, 795
TauI	GCSGC	2 cut(s)	362, 554
Tru1I	TTAA	3 cut(s)	164, 465, 651
Tru9I	TTAA	3 cut(s)	164, 465, 651
TscAI	CASTG	3 cut(s)	217, 454, 505
TseI	GCWGC	1 cut(s)	176
TspDTI	ATGAA	6 cut(s)	212, 290, 357, 530, 774, 819
TspRI	CASTG	3 cut(s)	217, 454, 505
VpaK11BI	GGWCC	1 cut(s)	26
XmnI	GAANNNNTTC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.