Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0021547

Physical Location & Seq

Genomic Coordinates Forward (+)

64566572 .. 64568296

Gene Structure 1725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTTGATACGGGTATTGGTTCCTTTGTGAGTGCATATATAGTAGAGATTAAGCACTGCTCTAGTCATTTGATGCAAGAAAGGGCTGAGCCGTTCCAAAAGCAGGTTGAACGGACGAAGAAGTGCTGTGGGAATCCAAACGTCCAATATGGTTGGATGACTGTTACTAAAGATGCACTATATAGCATCATGAAGTATGGGATTGAGCATGACGGACCCTCATTTATGTCCTCATATGGCACTAGAGTTCACTTTGCATCTGTTAATCATGTTTGTTCTATTTTAAGAAACACTCAGGTAATGGGTGTCATGAAACAAGAACAACTAGAAAGATACTTGCGACTGGTGCATCTCCATGCCAGAACTTATTTCGATCCAAATGAGGCTTATAAAGATTTGACAAAAGAGAAACGGCGTGCACAAATTGCTCAAGCACTTGCTGCAGAAGTTGCTGTGGTGCCACCTTCAAGATTAATGGCTCTAATCGGTTTCCTTGGGATGAAAATCACAACCTATGCCAATGCCAGGACAACACTGAAAGCAAGAAAAGGTATGAGGAAAGCCTTTATGGTGACCTTTAGGTCTGGTGCAGTCATGGGTTTTCTCCTTGCAGCCAATGGTCTTTTGGTACTTTACATTACCATCATTCTCTTTCAACTATACTGGGAAGGCATTGTTGAGGCAAATACTGGCTATGGTCTTGGTGGATCAGCAATGGCTCTTTTCATTAGTGTCTTTATCTTCTTCATTGCTATGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0001101 GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005768 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0006810 GO:0006811 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009651 GO:0009678 GO:0009705 GO:0009914 GO:0009926 GO:0009941 GO:0010008 GO:0010035 GO:0010248 GO:0010817 GO:0012505 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0022804 GO:0022857 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044433 GO:0044434 GO:0044435 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060918 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

H_PPase

Protein Analysis

254

Amino Acids

28.47

Weight (kDa)

9.55

Isoelectric Point (pI)

26.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
H_PPase	PF03030	148 - 245	2.1e-19	Inorganic H+ pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021547)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015324
rosa_multiflora	Rmu_ssc0000087.1_g000010
rosa_samantha	Rh6AG026700 Rh6CG021300 Rh6DG021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	390
AasI	GACNNNNNNGTC	1 cut(s)	580
Acc36I	ACCTGC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	368, 715
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	103, 525
AgsI	TTSAA	3 cut(s)	110, 468, 656
AjnI	CCWGG	1 cut(s)	524
Alw21I	GWGCWC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	417
AlwI	GGATC	2 cut(s)	368, 715
ApaLI	GTGCAC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	440, 611
AseI	ATTAAT	1 cut(s)	473
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	583
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	421
BanI	GGYRCC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	427, 623
BccI	CCATC	1 cut(s)	650
BceAI	ACGGC	2 cut(s)	76, 428
BciT130I	CCWGG	1 cut(s)	526
BfaI	CTAG	3 cut(s)	63, 243, 326
BfmI	CTRYAG	1 cut(s)	441
BfuAI	ACCTGC	1 cut(s)	94
BisI	GCNGC	2 cut(s)	441, 612
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	2 cut(s)	442, 613
Bme1390I	CCNGG	1 cut(s)	526
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	22, 217, 459
BmrFI	CCNGG	1 cut(s)	526
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	5 cut(s)	63, 163, 195, 266, 358
BmuI	ACTGGG	1 cut(s)	673
Bpu1102I	GCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 525
Bse1I	ACTGG	3 cut(s)	348, 668, 694
Bse3DI	GCAATG	2 cut(s)	720, 747
Bse8I	GATNNNNATC	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	526
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	2 cut(s)	162, 504
BseJI	GATNNNNATC	1 cut(s)	503
BseLI	CCNNNNNNNGG	2 cut(s)	103, 525
BseMI	GCAATG	2 cut(s)	720, 747
BseMII	CTCAG	2 cut(s)	78, 308
BseNI	ACTGG	3 cut(s)	348, 668, 694
BseSI	GKGCMC	1 cut(s)	421
BseXI	GCAGC	2 cut(s)	427, 623
BsgI	GTGCAG	1 cut(s)	609
BshNI	GGYRCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	103, 525
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	2 cut(s)	373, 707
Bsp1720I	GCTNAGC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	79, 307
BspHI	TCATGA	2 cut(s)	189, 309
BspLI	GGNNCC	3 cut(s)	22, 217, 459
BspMAI	CTGCAG	1 cut(s)	445
BspMI	ACCTGC	1 cut(s)	94
BspPI	GGATC	2 cut(s)	368, 715
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	2 cut(s)	720, 747
BsrI	ACTGG	3 cut(s)	348, 668, 694
BssECI	CCNNGG	1 cut(s)	493
BssMI	GATC	2 cut(s)	373, 707
BssT1I	CCWWGG	1 cut(s)	493
Bst2UI	CCWGG	1 cut(s)	526
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	3 cut(s)	425, 440, 449
BstC8I	GCNNGC	1 cut(s)	417
BstDEI	CTNAG	2 cut(s)	87, 294
BstEII	GGTNACC	1 cut(s)	571
BstF5I	GGATG	2 cut(s)	162, 504
BstKTI	GATC	2 cut(s)	376, 710
BstMBI	GATC	2 cut(s)	373, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	346, 425, 440, 449
BstNI	CCWGG	1 cut(s)	526
BstPI	GGTNACC	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	524
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	427, 623
BtsCI	GGATG	2 cut(s)	162, 504
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 533
BveI	ACCTGC	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	417
CciI	TCATGA	2 cut(s)	189, 309
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	6 cut(s)	190, 209, 269, 310, 356, 595
CviJI	RGCY	8 cut(s)	86, 91, 386, 479, 563, 614, 693, 719
CviKI_1	RGCY	8 cut(s)	86, 91, 386, 479, 563, 614, 693, 719
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	2 cut(s)	87, 294
DpnI	GATC	2 cut(s)	375, 709
DpnII	GATC	2 cut(s)	373, 707
DrdI	GACNNNNNNGTC	1 cut(s)	580
DseDI	GACNNNNNNGTC	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	493
Eco47I	GGWCC	1 cut(s)	215
Eco91I	GGTNACC	1 cut(s)	571
EcoO65I	GGTNACC	1 cut(s)	571
EcoRII	CCWGG	1 cut(s)	524
EcoT14I	CCWWGG	1 cut(s)	493
ErhI	CCWWGG	1 cut(s)	493
FaeI	CATG	6 cut(s)	193, 212, 272, 313, 359, 598
FatI	CATG	6 cut(s)	189, 208, 268, 309, 355, 594
FauNDI	CATATG	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	441, 612
FokI	GGATG	2 cut(s)	169, 511
Fsp4HI	GCNGC	2 cut(s)	441, 612
FspBI	CTAG	3 cut(s)	63, 243, 326
GluI	GCNGC	2 cut(s)	441, 612
Hin1II	CATG	6 cut(s)	193, 212, 272, 313, 359, 598
HinfI	GANTC	1 cut(s)	133
HphI	GGTGA	1 cut(s)	583
Hpy166II	GTNNAC	2 cut(s)	250, 419
Hpy188III	TCNNGA	3 cut(s)	190, 310, 468
Hpy8I	GTNNAC	2 cut(s)	250, 419
HpyAV	CCTTC	2 cut(s)	474, 662
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	141
HpyCH4V	TGCA	9 cut(s)	35, 76, 176, 257, 349, 419, 443, 590, 611
HpyF10VI	GCNNNNNNNGC	4 cut(s)	346, 425, 440, 449
HpyF3I	CTNAG	2 cut(s)	87, 294
HpySE526I	ACGT	1 cut(s)	141
Hsp92II	CATG	6 cut(s)	193, 212, 272, 313, 359, 598
Kzo9I	GATC	2 cut(s)	373, 707
LpnPI	CCDG	9 cut(s)	89, 281, 329, 373, 511, 538, 570, 649, 675
Lsp1109I	GCAGC	2 cut(s)	427, 623
LweI	GCATC	5 cut(s)	63, 163, 195, 266, 358
MaeI	CTAG	3 cut(s)	63, 243, 326
MaeII	ACGT	1 cut(s)	141
MaeIII	GTNAC	2 cut(s)	163, 571
MalI	GATC	2 cut(s)	375, 709
MboI	GATC	2 cut(s)	373, 707
MboII	GAAGA	3 cut(s)	130, 733, 736
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	423
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	229, 241, 376, 549, 673
MseI	TTAA	5 cut(s)	51, 264, 284, 473, 760
MslI	CAYNNNNRTG	2 cut(s)	354, 752
MspR9I	CCNGG	1 cut(s)	526
MvaI	CCWGG	1 cut(s)	526
MwoI	GCNNNNNNNGC	4 cut(s)	346, 425, 440, 449
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	2 cut(s)	373, 707
NlaIII	CATG	6 cut(s)	193, 212, 272, 313, 359, 598
NlaIV	GGNNCC	3 cut(s)	22, 217, 459
NmuCI	GTSAC	1 cut(s)	571
PagI	TCATGA	2 cut(s)	189, 309
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	442, 613
PshBI	ATTAAT	1 cut(s)	473
PsiI	TTATAA	1 cut(s)	390
Psp6I	CCWGG	1 cut(s)	524
PspEI	GGTNACC	1 cut(s)	571
PspGI	CCWGG	1 cut(s)	524
PspN4I	GGNNCC	3 cut(s)	22, 217, 459
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	445
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
RseI	CAYNNNNRTG	2 cut(s)	354, 752
SaqAI	TTAA	5 cut(s)	51, 264, 284, 473, 760
SatI	GCNGC	2 cut(s)	441, 612
Sau3AI	GATC	2 cut(s)	373, 707
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	8 cut(s)	108, 144, 300, 466, 515, 553, 578, 584
SfaNI	GCATC	5 cut(s)	63, 163, 195, 266, 358
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	354, 752
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	63, 243, 326
StyD4I	CCNGG	1 cut(s)	524
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	372
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	5 cut(s)	51, 264, 284, 473, 760
Tru9I	TTAA	5 cut(s)	51, 264, 284, 473, 760
TscAI	CASTG	2 cut(s)	62, 540
TseFI	GTSAC	1 cut(s)	571
TseI	GCWGC	2 cut(s)	440, 611
Tsp45I	GTSAC	1 cut(s)	571
TspDTI	ATGAA	5 cut(s)	206, 326, 515, 715, 736
TspGWI	ACGGA	2 cut(s)	127, 228
TspRI	CASTG	2 cut(s)	62, 540
VneI	GTGCAC	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	215
VspI	ATTAAT	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XspI	CTAG	3 cut(s)	63, 243, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.