Rh6AG026700
NAC Family

inactive poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0021547
Physical Location & Seq
Reverse (-)
3343246 .. 3345833
2588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG026700.1

Sequence Viewer

Length: 351 bp
ATGTACTGTGGGAATCCACATGTCCAGTATGGTTGGATGACTGTTACCAAAGATGCACTATCTAACATCATGATGTATGGGATTGGGCATGACGGACCCTCATTTATGTCCTCATATGGCACTGGAGTTCACATGACATCTGTGAATCATGTTTGTTCTATTTTAAGAAACACCCAGGTAATGGATGTAAACAAGTACAACCAGAAAGATACTTGCGACTGGTGCATCTCCATGCCAGAACTTATTTCGATCCAAATGAGGCTTATAAAGATTCGACAAAAGAGAAACGGCGTGCACAAATTGCTCAAGCACTTGCTGCAGAAGTTGCTGTGGTGCCACCTTGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

116

Amino Acids

13.43

Weight (kDa)

8.87

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021547)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015324
rosa_multiflora Rmu_ssc0000087.1_g000010
rosa_samantha Rh6AG026700 Rh6CG021300 Rh6DG021500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 181
AclWI GGATC 1 cut(s) 244
AfaI GTAC 2 cut(s) 5, 197
AfiI CCNNNNNNNGG 1 cut(s) 181
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 344
AjnI CCWGG 1 cut(s) 174
Alw21I GWGCWC 1 cut(s) 297
Alw44I GTGCAC 1 cut(s) 293
AlwI GGATC 1 cut(s) 244
ApaLI GTGCAC 1 cut(s) 293
ApeKI GCWGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 95
AvaII GGWCC 1 cut(s) 95
BaeGI GKGCMC 1 cut(s) 297
BanI GGYRCC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 297
BbvI GCAGC 1 cut(s) 303
BceAI ACGGC 1 cut(s) 304
BciT130I CCWGG 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 317
BisI GCNGC 1 cut(s) 317
BlsI GCNGC 1 cut(s) 318
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 97, 335
BmrFI CCNGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 43, 234
BpmI CTGGAG 1 cut(s) 144
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse1I ACTGG 3 cut(s) 25, 127, 224
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 2 cut(s) 42, 190
BseLI CCNNNNNNNGG 1 cut(s) 181
BseNI ACTGG 3 cut(s) 25, 127, 224
BseSI GKGCMC 1 cut(s) 297
BseXI GCAGC 1 cut(s) 303
BshNI GGYRCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 1 cut(s) 249
BspHI TCATGA 1 cut(s) 69
BspLI GGNNCC 2 cut(s) 97, 335
BspMAI CTGCAG 1 cut(s) 321
BspPI GGATC 1 cut(s) 244
BspT107I GGYRCC 1 cut(s) 333
BsrI ACTGG 3 cut(s) 25, 127, 224
BssECI CCNNGG 1 cut(s) 174
BssMI GATC 1 cut(s) 249
Bst2UI CCWGG 1 cut(s) 176
Bst4CI ACNGT 2 cut(s) 8, 43
BstAPI GCANNNNNTGC 3 cut(s) 301, 316, 325
BstC8I GCNNGC 1 cut(s) 293
BstF5I GGATG 2 cut(s) 42, 190
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 4 cut(s) 222, 301, 316, 325
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 297
BstV1I GCAGC 1 cut(s) 303
BtsCI GGATG 2 cut(s) 42, 190
BtsIMutI CAGTG 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 293
CciI TCATGA 1 cut(s) 69
Cfr13I GGNCC 1 cut(s) 95
Csp6I GTAC 2 cut(s) 4, 196
CviAII CATG 6 cut(s) 20, 70, 89, 133, 149, 232
CviJI RGCY 1 cut(s) 262
CviKI_1 RGCY 1 cut(s) 262
CviQI GTAC 2 cut(s) 4, 196
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 174
FaeI CATG 6 cut(s) 23, 73, 92, 136, 152, 235
FatI CATG 6 cut(s) 19, 69, 88, 132, 148, 231
FauNDI CATATG 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 317
FokI GGATG 2 cut(s) 49, 197
Fsp4HI GCNGC 1 cut(s) 317
GluI GCNGC 1 cut(s) 317
GsuI CTGGAG 1 cut(s) 144
Hin1II CATG 6 cut(s) 23, 73, 92, 136, 152, 235
HinfI GANTC 3 cut(s) 13, 145, 271
Hpy166II GTNNAC 3 cut(s) 130, 190, 295
Hpy188III TCNNGA 1 cut(s) 70
Hpy8I GTNNAC 3 cut(s) 130, 190, 295
HpyCH4III ACNGT 2 cut(s) 8, 43
HpyCH4V TGCA 4 cut(s) 56, 225, 295, 319
HpyF10VI GCNNNNNNNGC 4 cut(s) 222, 301, 316, 325
Hsp92II CATG 6 cut(s) 23, 73, 92, 136, 152, 235
Kzo9I GATC 1 cut(s) 249
LpnPI CCDG 7 cut(s) 38, 108, 161, 188, 205, 215, 249
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 43, 234
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 251
MboI GATC 1 cut(s) 249
MhlI GDGCHC 1 cut(s) 297
MluCI AATT 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 3 cut(s) 109, 121, 252
MseI TTAA 2 cut(s) 164, 349
MslI CAYNNNNRTG 2 cut(s) 71, 230
MspR9I CCNGG 1 cut(s) 176
MvaI CCWGG 1 cut(s) 176
MwoI GCNNNNNNNGC 4 cut(s) 222, 301, 316, 325
NdeI CATATG 1 cut(s) 115
NdeII GATC 1 cut(s) 249
NlaIII CATG 6 cut(s) 23, 73, 92, 136, 152, 235
NlaIV GGNNCC 2 cut(s) 97, 335
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 69
PciI ACATGT 1 cut(s) 19
PfeI GAWTC 3 cut(s) 13, 145, 271
PflMI CCANNNNNTGG 1 cut(s) 181
PkrI GCNGC 1 cut(s) 318
PscI ACATGT 1 cut(s) 19
PsiI TTATAA 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 97, 335
PspPI GGNCC 1 cut(s) 95
PstI CTGCAG 1 cut(s) 321
RsaI GTAC 2 cut(s) 5, 197
RsaNI GTAC 2 cut(s) 4, 196
RseI CAYNNNNRTG 2 cut(s) 71, 230
SaqAI TTAA 2 cut(s) 164, 349
SatI GCNGC 1 cut(s) 317
Sau3AI GATC 1 cut(s) 249
Sau96I GGNCC 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 176
SduI GDGCHC 1 cut(s) 297
SetI ASST 2 cut(s) 180, 342
SfaNI GCATC 2 cut(s) 43, 234
SfcI CTRYAG 1 cut(s) 317
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 2 cut(s) 71, 230
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 174
TaaI ACNGT 2 cut(s) 8, 43
TaqI TCGA 2 cut(s) 248, 274
TasI AATT 1 cut(s) 299
TatI WGTACW 2 cut(s) 3, 195
TfiI GAWTC 3 cut(s) 13, 145, 271
Tru1I TTAA 2 cut(s) 164, 349
Tru9I TTAA 2 cut(s) 164, 349
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 316
TspGWI ACGGA 1 cut(s) 108
TspRI CASTG 1 cut(s) 127
Van91I CCANNNNNTGG 1 cut(s) 181
VneI GTGCAC 1 cut(s) 293
VpaK11BI GGWCC 1 cut(s) 95
XceI RCATGY 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.