Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000087.1

Orthogroup ID

OG0021547

Physical Location & Seq

Genomic Coordinates Forward (+)

66053 .. 66709

Gene Structure 657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000087.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgtactgtgggaatccacatgtccagtatggttggatgactgttaccaaagatgcactatctaacatcatgatgtatgggattgggcatgacggaccctcatttatgtcctcatatggcactggagttcacatgacatctgtgaatcatgtttgctctattttaagaaacacccaggtaatggatgtaatgaaacaagaacaaccagtaagatacttgcgactggtgcatctccatgccagaacttatttcgatccaaatgaggcttataaagattcgacaaaagagaaacggcgtgcacaaattgctcaagcacttgctgcagaagttgctgtggtgccaccttcgagattaatggctctaatcggtcaggctctaaaatggcagcagcaccaaggattacgtcctccgggaacacactttgacttatttaggaagactacagctatgaaacaggatgtggatgacttgaattcaattacccttcaacatacaagtaattttgggaccaacagtcatgcagaatgtgctcgattctcaccagatggccagtttcttgtctctaactcttttgatggattaattggttgtggactacaacaaagggtcaacaagttcaagtctttgcaactatcatcaaagagaccaactgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000381 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0080090 GO:0090304 GO:1901360 GO:1902494 GO:1903311 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

218

Amino Acids

24.44

Weight (kDa)

9.34

Isoelectric Point (pI)

46.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021547)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015324
rosa_multiflora	Rmu_ssc0000087.1_g000010
rosa_samantha	Rh6AG026700 Rh6CG021300 Rh6DG021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccB1I	GGYRCC	1 cut(s)	337
AccB7I	CCANNNNNTGG	1 cut(s)	181
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	472
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	19
AgsI	TTSAA	4 cut(s)	472, 477, 488, 619
AhdI	GACNNNNNGTC	1 cut(s)	513
AjnI	CCWGG	1 cut(s)	174
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw21I	GWGCWC	2 cut(s)	301, 532
Alw26I	GTCTC	2 cut(s)	565, 637
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	248
AoxI	GGCC	1 cut(s)	547
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	3 cut(s)	320, 385, 388
ApoI	RAATTY	1 cut(s)	472
AseI	ATTAAT	2 cut(s)	353, 581
AspS9I	GGNCC	2 cut(s)	95, 507
AsuC2I	CCSGG	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	531
AvaII	GGWCC	2 cut(s)	95, 507
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	549
BanI	GGYRCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	443
Bbv12I	GWGCWC	2 cut(s)	301, 532
BbvI	GCAGC	3 cut(s)	307, 397, 400
BccI	CCATC	2 cut(s)	539, 569
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	176
BcnI	CCSGG	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	565, 637
BfmI	CTRYAG	2 cut(s)	321, 441
BisI	GCNGC	3 cut(s)	321, 386, 389
BlsI	GCNGC	3 cut(s)	322, 387, 390
Bme1390I	CCNGG	2 cut(s)	176, 411
Bme18I	GGWCC	2 cut(s)	95, 507
BmeRI	GACNNNNNGTC	1 cut(s)	513
BmgT120I	GGNCC	2 cut(s)	95, 507
BmiI	GGNNCC	3 cut(s)	97, 339, 508
BmrFI	CCNGG	2 cut(s)	176, 411
BmsI	GCATC	2 cut(s)	43, 238
BpiI	GAAGAC	1 cut(s)	443
BpmI	CTGGAG	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	637
BsaJI	CCNNGG	2 cut(s)	174, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	5 cut(s)	25, 127, 206, 228, 550
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	174, 394
BseGI	GGATG	4 cut(s)	42, 190, 463, 469
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseNI	ACTGG	5 cut(s)	25, 127, 206, 228, 550
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	307, 397, 400
BshFI	GGCC	1 cut(s)	549
BshNI	GGYRCC	1 cut(s)	337
BsiHKAI	GWGCWC	2 cut(s)	301, 532
BsiSI	CCGG	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	2 cut(s)	565, 637
BsmFI	GGGAC	1 cut(s)	520
BsnI	GGCC	1 cut(s)	549
Bso31I	GGTCTC	1 cut(s)	637
Bsp1286I	GDGCHC	2 cut(s)	301, 532
Bsp143I	GATC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	549
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	3 cut(s)	97, 339, 508
BspMAI	CTGCAG	1 cut(s)	325
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	337
BspTNI	GGTCTC	1 cut(s)	637
BsrI	ACTGG	5 cut(s)	25, 127, 206, 228, 550
BssECI	CCNNGG	2 cut(s)	174, 394
BssMI	GATC	1 cut(s)	253
BssT1I	CCWWGG	1 cut(s)	394
Bst2UI	CCWGG	1 cut(s)	176
Bst4CI	ACNGT	3 cut(s)	8, 43, 515
BstAPI	GCANNNNNTGC	4 cut(s)	305, 320, 329, 527
BstC8I	GCNNGC	1 cut(s)	297
BstF5I	GGATG	4 cut(s)	42, 190, 463, 469
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	565, 637
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	5 cut(s)	226, 305, 320, 329, 527
BstNI	CCWGG	1 cut(s)	176
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	2 cut(s)	174, 409
BstSFI	CTRYAG	2 cut(s)	321, 441
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	3 cut(s)	307, 397, 400
BstV2I	GAAGAC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	4 cut(s)	42, 190, 463, 469
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	297
CciI	TCATGA	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	95, 507
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	7 cut(s)	20, 70, 89, 133, 149, 236, 518
CviJI	RGCY	5 cut(s)	266, 359, 374, 446, 549
CviKI_1	RGCY	5 cut(s)	266, 359, 374, 446, 549
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
DriI	GACNNNNNGTC	1 cut(s)	513
EaeI	YGGCCR	1 cut(s)	547
Eam1105I	GACNNNNNGTC	1 cut(s)	513
Eco130I	CCWWGG	1 cut(s)	394
Eco31I	GGTCTC	1 cut(s)	637
Eco47I	GGWCC	2 cut(s)	95, 507
EcoRI	GAATTC	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	7 cut(s)	23, 73, 92, 136, 152, 239, 521
FaqI	GGGAC	1 cut(s)	520
FatI	CATG	7 cut(s)	19, 69, 88, 132, 148, 235, 517
FauNDI	CATATG	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	321, 386, 389
FokI	GGATG	4 cut(s)	49, 197, 470, 476
Fsp4HI	GCNGC	3 cut(s)	321, 386, 389
GluI	GCNGC	3 cut(s)	321, 386, 389
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	410
Hin1II	CATG	7 cut(s)	23, 73, 92, 136, 152, 239, 521
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	13, 145, 275, 534
HpaII	CCGG	1 cut(s)	410
HphI	GGTGA	1 cut(s)	531
Hpy166II	GTNNAC	4 cut(s)	130, 299, 593, 610
Hpy188III	TCNNGA	2 cut(s)	70, 348
Hpy8I	GTNNAC	4 cut(s)	130, 299, 593, 610
HpyAV	CCTTC	2 cut(s)	354, 494
HpyCH4III	ACNGT	3 cut(s)	8, 43, 515
HpyCH4IV	ACGT	1 cut(s)	403
HpyCH4V	TGCA	7 cut(s)	56, 229, 299, 323, 521, 628, 653
HpyF10VI	GCNNNNNNNGC	5 cut(s)	226, 305, 320, 329, 527
HpySE526I	ACGT	1 cut(s)	403
Hsp92II	CATG	7 cut(s)	23, 73, 92, 136, 152, 239, 521
Kzo9I	GATC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	307, 397, 400
LweI	GCATC	2 cut(s)	43, 238
MaeII	ACGT	1 cut(s)	403
MaeIII	GTNAC	1 cut(s)	43
MalI	GATC	1 cut(s)	255
MboI	GATC	1 cut(s)	253
MboII	GAAGA	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	301, 532
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	5 cut(s)	303, 472, 477, 499, 582
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	1 cut(s)	14
MnlI	CCTC	4 cut(s)	109, 121, 256, 417
Mox20I	TGGCCA	1 cut(s)	549
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	3 cut(s)	164, 353, 581
MslI	CAYNNNNRTG	2 cut(s)	71, 234
Msp20I	TGGCCA	1 cut(s)	549
MspI	CCGG	1 cut(s)	410
MspR9I	CCNGG	2 cut(s)	176, 411
MvaI	CCWGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	5 cut(s)	226, 305, 320, 329, 527
NciI	CCSGG	1 cut(s)	411
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	7 cut(s)	23, 73, 92, 136, 152, 239, 521
NlaIV	GGNNCC	3 cut(s)	97, 339, 508
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	69
PciI	ACATGT	1 cut(s)	19
PfeI	GAWTC	4 cut(s)	13, 145, 275, 534
PflMI	CCANNNNNTGG	1 cut(s)	181
PfoI	TCCNGGA	1 cut(s)	409
PkrI	GCNGC	3 cut(s)	322, 387, 390
PscI	ACATGT	1 cut(s)	19
PshBI	ATTAAT	2 cut(s)	353, 581
PsiI	TTATAA	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	174
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	97, 339, 508
PspPI	GGNCC	2 cut(s)	95, 507
PstI	CTGCAG	1 cut(s)	325
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	2 cut(s)	71, 234
SaqAI	TTAA	3 cut(s)	164, 353, 581
SatI	GCNGC	3 cut(s)	321, 386, 389
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	95, 507
ScrFI	CCNGG	2 cut(s)	176, 411
SduI	GDGCHC	2 cut(s)	301, 532
SetI	ASST	4 cut(s)	180, 346, 406, 448
SfaNI	GCATC	2 cut(s)	43, 238
SfcI	CTRYAG	2 cut(s)	321, 441
SinI	GGWCC	2 cut(s)	95, 507
SmiMI	CAYNNNNRTG	2 cut(s)	71, 234
SmlI	CTYRAG	1 cut(s)	309
SmoI	CTYRAG	1 cut(s)	309
Sse9I	AATT	5 cut(s)	303, 472, 477, 499, 582
StyD4I	CCNGG	2 cut(s)	174, 409
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	3 cut(s)	8, 43, 515
TaiI	ACGT	1 cut(s)	406
TaqI	TCGA	4 cut(s)	252, 278, 347, 532
TaqII	GACCGA	1 cut(s)	356
TasI	AATT	5 cut(s)	303, 472, 477, 499, 582
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	4 cut(s)	13, 145, 275, 534
Tru1I	TTAA	3 cut(s)	164, 353, 581
Tru9I	TTAA	3 cut(s)	164, 353, 581
TscAI	CASTG	1 cut(s)	127
TseI	GCWGC	3 cut(s)	320, 385, 388
TspDTI	ATGAA	2 cut(s)	206, 464
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	2 cut(s)	95, 507
VspI	ATTAAT	2 cut(s)	353, 581
XapI	RAATTY	1 cut(s)	472
XceI	RCATGY	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.