Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0021547

Physical Location & Seq

Genomic Coordinates Reverse (-)

1899992 .. 1900471

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG021500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATGTAATGAAACAAGAACAACCAGAACGATACTTGCGACTGGTGCATCTCCATGCCAGAACTTATTTCGATCCAAATGAGGCTTATAAAGATTCGACAAAAGAGAAACGGCGTGCACAAATTGCTCAAGCACTTGCTGCAGAAGTTGCTGTGGTGCCACCTTCAAGATTAATGGCTCTAATCGGTCAGGCTCTAAAGTGGCAGCAGCACCAAGGATTACGCCCTCCGGGAACACAATTTGACTTATTTAGGAAGACTGCAGCTATGAAACAAGATGTGGATGACTTGAATTCAATTAATCTTCAACATACAAGTAAGTTTGGGACCAAAAGTCATGCAGAATGTGCTCGATTCTCACCAGATGGCCAGTTTCTTGTCTCTAACTCTTTTGATGGATTAATTGGTTGTGGACTACAACAAAGGGTCAACAAGTTCAAGTCTTTGCAATTTTTATCATCAAAGAGACCAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000381 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0010468 GO:0016070 GO:0016604 GO:0016607 GO:0019219 GO:0019222 GO:0031323 GO:0031461 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048024 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080008 GO:0080090 GO:0090304 GO:1901360 GO:1902494 GO:1903311 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

159

Amino Acids

18.02

Weight (kDa)

9.73

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021547)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015324
rosa_multiflora	Rmu_ssc0000087.1_g000010
rosa_samantha	Rh6AG026700 Rh6CG021300 Rh6DG021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	157
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	1 cut(s)	292
AgsI	TTSAA	5 cut(s)	168, 292, 297, 308, 439
AhdI	GACNNNNNGTC	1 cut(s)	333
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	2 cut(s)	121, 352
Alw26I	GTCTC	2 cut(s)	385, 460
Alw44I	GTGCAC	1 cut(s)	117
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	367
ApaLI	GTGCAC	1 cut(s)	117
ApeKI	GCWGC	4 cut(s)	140, 205, 208, 263
ApoI	RAATTY	1 cut(s)	292
AseI	ATTAAT	3 cut(s)	173, 300, 401
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	121
BalI	TGGCCA	1 cut(s)	369
BanI	GGYRCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	2 cut(s)	121, 352
BbvI	GCAGC	4 cut(s)	127, 217, 220, 275
BccI	CCATC	2 cut(s)	359, 389
BceAI	ACGGC	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	385, 460
BfmI	CTRYAG	2 cut(s)	141, 261
BisI	GCNGC	4 cut(s)	141, 206, 209, 264
BlsI	GCNGC	4 cut(s)	142, 207, 210, 265
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	327
BmeRI	GACNNNNNGTC	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	159, 328
BmrFI	CCNGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	263
BpuEI	CTTGAG	1 cut(s)	114
BpuMI	CCSGG	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	460
BsaJI	CCNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	48, 370
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	2 cut(s)	10, 289
BseNI	ACTGG	2 cut(s)	48, 370
BseSI	GKGCMC	1 cut(s)	121
BseXI	GCAGC	4 cut(s)	127, 217, 220, 275
BshFI	GGCC	1 cut(s)	369
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	121, 352
BsiSI	CCGG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	385, 460
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	460
Bsp1286I	GDGCHC	2 cut(s)	121, 352
Bsp143I	GATC	1 cut(s)	73
BspANI	GGCC	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	159, 328
BspMAI	CTGCAG	2 cut(s)	145, 265
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	460
BsrI	ACTGG	2 cut(s)	48, 370
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	214
BstAPI	GCANNNNNTGC	4 cut(s)	125, 140, 149, 347
BstC8I	GCNNGC	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	10, 289
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	385, 460
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 125, 140, 149, 347
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	2 cut(s)	141, 261
BstSLI	GKGCMC	1 cut(s)	121
BstV1I	GCAGC	4 cut(s)	127, 217, 220, 275
BstV2I	GAAGAC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	10, 289
Cac8I	GCNNGC	1 cut(s)	117
Cfr13I	GGNCC	1 cut(s)	327
CviAII	CATG	2 cut(s)	56, 338
CviJI	RGCY	5 cut(s)	86, 179, 194, 266, 369
CviKI_1	RGCY	5 cut(s)	86, 179, 194, 266, 369
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	333
EaeI	YGGCCR	1 cut(s)	367
Eam1105I	GACNNNNNGTC	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	214
Eco31I	GGTCTC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	2 cut(s)	59, 341
FaiI	YATR	6 cut(s)	57, 90, 269, 312, 339, 478
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	55, 337
Fnu4HI	GCNGC	4 cut(s)	141, 206, 209, 264
FokI	GGATG	2 cut(s)	17, 296
Fsp4HI	GCNGC	4 cut(s)	141, 206, 209, 264
GluI	GCNGC	4 cut(s)	141, 206, 209, 264
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	230
Hin1II	CATG	2 cut(s)	59, 341
HincII	GTYRAC	1 cut(s)	430
HindII	GTYRAC	1 cut(s)	430
HinfI	GANTC	2 cut(s)	95, 354
HpaII	CCGG	1 cut(s)	230
HphI	GGTGA	1 cut(s)	351
Hpy166II	GTNNAC	3 cut(s)	119, 413, 430
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	3 cut(s)	119, 413, 430
HpyAV	CCTTC	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	49, 119, 143, 263, 341, 448, 476
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 125, 140, 149, 347
Hsp92II	CATG	2 cut(s)	59, 341
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	7 cut(s)	29, 39, 73, 176, 243, 375, 383
Lsp1109I	GCAGC	4 cut(s)	127, 217, 220, 275
LweI	GCATC	1 cut(s)	58
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	2 cut(s)	268, 296
MhlI	GDGCHC	2 cut(s)	121, 352
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	6 cut(s)	123, 239, 292, 297, 402, 449
MluNI	TGGCCA	1 cut(s)	369
MnlI	CCTC	2 cut(s)	76, 237
Mox20I	TGGCCA	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	369
MseI	TTAA	3 cut(s)	173, 300, 401
MslI	CAYNNNNRTG	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	1 cut(s)	230
MspR9I	CCNGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	5 cut(s)	46, 125, 140, 149, 347
NciI	CCSGG	1 cut(s)	231
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	2 cut(s)	59, 341
NlaIV	GGNNCC	2 cut(s)	159, 328
PcsI	WCGNNNNNNNCGW	1 cut(s)	37
PfeI	GAWTC	2 cut(s)	95, 354
PfoI	TCCNGGA	1 cut(s)	229
PkrI	GCNGC	4 cut(s)	142, 207, 210, 265
PshBI	ATTAAT	3 cut(s)	173, 300, 401
PsiI	TTATAA	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	159, 328
PspPI	GGNCC	1 cut(s)	327
PstI	CTGCAG	2 cut(s)	145, 265
RseI	CAYNNNNRTG	1 cut(s)	54
SaqAI	TTAA	3 cut(s)	173, 300, 401
SatI	GCNGC	4 cut(s)	141, 206, 209, 264
Sau3AI	GATC	1 cut(s)	73
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	2 cut(s)	121, 352
SetI	ASST	2 cut(s)	166, 268
SfaNI	GCATC	1 cut(s)	58
SfcI	CTRYAG	2 cut(s)	141, 261
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	129
SmoI	CTYRAG	1 cut(s)	129
Sse9I	AATT	6 cut(s)	123, 239, 292, 297, 402, 449
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	214
TaqI	TCGA	3 cut(s)	72, 98, 352
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	6 cut(s)	123, 239, 292, 297, 402, 449
TfiI	GAWTC	2 cut(s)	95, 354
Tru1I	TTAA	3 cut(s)	173, 300, 401
Tru9I	TTAA	3 cut(s)	173, 300, 401
TseI	GCWGC	4 cut(s)	140, 205, 208, 263
TspDTI	ATGAA	2 cut(s)	26, 284
VneI	GTGCAC	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	3 cut(s)	173, 300, 401
XapI	RAATTY	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.