Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018657

Physical Location & Seq

Genomic Coordinates Reverse (-)

66625516 .. 66626500

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015477

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGTTGAAGTATATGTTGGAAGCTGGAACGTACCTCGGTGATGAAATACGAATTTATGGACGTGCAAACCTGAATAGGGCCTTTGATGGTGATATAGTGGCAGTCCAGCTTCTGCCTGGGGAGCAATGGCATGAGGATAAATCTATGGCTATAGCAGACGAAGAGGATGAAGAAGGTGTTCATCTGGTTCCTGGCAGTGCTGATGATGTTCCTCGAAAAACAGTTCAACCACAAGATTCTGCTGGAGAAACATGTTCTATTTCAAGTTGTCCATTTGGCCGTATTGTAGGTATAATAAAGCAGAATCGGCAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

4.57

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp44_CSD1	PF17216	16 - 54	3.4e-06	Rrp44-like cold shock domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018657)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015477
rosa_multiflora	Rmu_sc0004077.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216950
rosa_samantha	Rh6BG002100 Rh6CG006800 Rh6CG006900 Rh6CG008100 Rh6DG007200 Rh6DG007300 Rh6DG009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	277
AcsI	RAATTY	1 cut(s)	51
AfaI	GTAC	1 cut(s)	32
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	7, 227, 264
AjiI	CACGTC	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	115, 190
AjuI	GAANNNNNNNTTGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	23, 109
AluI	AGCT	2 cut(s)	23, 109
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	78, 277
ApoI	RAATTY	1 cut(s)	51
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	2 cut(s)	50, 101
BccI	CCATC	1 cut(s)	80
BceAI	ACGGC	1 cut(s)	264
BciT130I	CCWGG	2 cut(s)	117, 192
BfmI	CTRYAG	1 cut(s)	150
Bme1390I	CCNGG	2 cut(s)	117, 192
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	117, 192
BpmI	CTGGAG	1 cut(s)	264
BsaJI	CCNNGG	2 cut(s)	34, 116
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	131
BseBI	CCWGG	2 cut(s)	117, 192
BseDI	CCNNGG	2 cut(s)	34, 116
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	131
BshFI	GGCC	2 cut(s)	80, 279
BslI	CCNNNNNNNGG	1 cut(s)	76
BsnI	GGCC	2 cut(s)	80, 279
BspANI	GGCC	2 cut(s)	80, 279
BspLI	GGNNCC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	34, 116
Bst2UI	CCWGG	2 cut(s)	117, 192
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 307
BstNI	CCWGG	2 cut(s)	117, 192
BstNSI	RCATGY	1 cut(s)	255
BstSCI	CCNGG	2 cut(s)	115, 190
BstSFI	CTRYAG	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	80, 279
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	172
BtsI	GCAGTG	1 cut(s)	202
BtsIMutI	CAGTG	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	112
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	31
CviAII	CATG	2 cut(s)	131, 252
CviJI	RGCY	5 cut(s)	23, 80, 109, 149, 279
CviKI_1	RGCY	5 cut(s)	23, 80, 109, 149, 279
CviQI	GTAC	1 cut(s)	31
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	115, 190
FaeI	CATG	2 cut(s)	134, 255
FaiI	YATR	9 cut(s)	12, 14, 57, 95, 132, 146, 152, 253, 293
FatI	CATG	2 cut(s)	130, 251
FokI	GGATG	1 cut(s)	179
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	2 cut(s)	80, 279
Hin1II	CATG	2 cut(s)	134, 255
HinfI	GANTC	2 cut(s)	236, 304
HphI	GGTGA	2 cut(s)	50, 101
HpyAV	CCTTC	1 cut(s)	167
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4IV	ACGT	2 cut(s)	29, 61
HpyCH4V	TGCA	1 cut(s)	65
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 307
HpySE526I	ACGT	2 cut(s)	29, 61
Hsp92II	CATG	2 cut(s)	134, 255
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	9 cut(s)	9, 83, 102, 119, 129, 170, 177, 204, 228
MaeII	ACGT	2 cut(s)	29, 61
MboII	GAAGA	2 cut(s)	173, 182
MfeI	CAATTG	1 cut(s)	311
MluCI	AATT	2 cut(s)	51, 311
MnlI	CCTC	4 cut(s)	44, 127, 157, 222
MroXI	GAANNNNTTC	1 cut(s)	177
MspR9I	CCNGG	2 cut(s)	117, 192
MunI	CAATTG	1 cut(s)	311
MvaI	CCWGG	2 cut(s)	117, 192
MwoI	GCNNNNNNNGC	2 cut(s)	121, 307
NlaIII	CATG	2 cut(s)	134, 255
NlaIV	GGNNCC	1 cut(s)	189
NspI	RCATGY	1 cut(s)	255
PciI	ACATGT	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	236, 304
PscI	ACATGT	1 cut(s)	251
Psp6I	CCWGG	2 cut(s)	115, 190
PspGI	CCWGG	2 cut(s)	115, 190
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	32
RsaNI	GTAC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	117, 192
SetI	ASST	8 cut(s)	25, 32, 36, 64, 72, 111, 178, 292
SfcI	CTRYAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	51, 311
StyD4I	CCNGG	2 cut(s)	115, 190
TaaI	ACNGT	1 cut(s)	223
TaiI	ACGT	2 cut(s)	32, 64
TaqI	TCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	51, 311
TfiI	GAWTC	2 cut(s)	236, 304
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	3 cut(s)	57, 170, 183
TspRI	CASTG	1 cut(s)	202
XapI	RAATTY	1 cut(s)	51
XceI	RCATGY	1 cut(s)	255
XcmI	CCANNNNNNNNNTGG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.