Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0018657

Physical Location & Seq

Genomic Coordinates Forward (+)

784337 .. 786645

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG007300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGAGTATATTATGTACACTGTACTCTCTTACAGAGGATGAAGAAGGTGTTCATCGATCTGGTTTAATTCCTGGCAGTGCTGATGATGTTCCTAGAAAAACAGTTCAACCACAAGATTCTGCTGGAGAAACATGTTCTATTTCAAGTTGTCCACTTGGCCGTATTGTTGGTACAATAAAGCAGAATCGGCAATTAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

66

Amino Acids

7.06

Weight (kDa)

5.08

Isoelectric Point (pI)

64.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018657)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015477
rosa_multiflora	Rmu_sc0004077.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216950
rosa_samantha	Rh6BG002100 Rh6CG006800 Rh6CG006900 Rh6CG008100 Rh6DG007200 Rh6DG007300 Rh6DG009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	157
AfaI	GTAC	3 cut(s)	16, 23, 172
AflIII	ACRYGT	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	107, 144
AjnI	CCWGG	1 cut(s)	70
AoxI	GGCC	1 cut(s)	157
Asp700I	GAANNNNTTC	1 cut(s)	48
BceAI	ACGGC	1 cut(s)	144
BciT130I	CCWGG	1 cut(s)	72
BfaI	CTAG	1 cut(s)	93
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BpmI	CTGGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	55
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	55
BseGI	GGATG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	159
BshVI	ATCGAT	1 cut(s)	55
BsnI	GGCC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	56
BspANI	GGCC	1 cut(s)	159
BspDI	ATCGAT	1 cut(s)	55
BsrGI	TGTACA	1 cut(s)	14
BssMI	GATC	1 cut(s)	56
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	21, 103
BstAUI	TGTACA	1 cut(s)	14
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	135
BstSCI	CCNGG	1 cut(s)	70
Bsu15I	ATCGAT	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	17, 82
ClaI	ATCGAT	1 cut(s)	55
Csp6I	GTAC	3 cut(s)	15, 22, 171
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	1 cut(s)	159
CviKI_1	RGCY	1 cut(s)	159
CviQI	GTAC	3 cut(s)	15, 22, 171
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
EaeI	YGGCCR	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	135
FaiI	YATR	4 cut(s)	8, 13, 133, 199
FatI	CATG	1 cut(s)	131
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	1 cut(s)	93
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	159
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	2 cut(s)	116, 184
Hpy166II	GTNNAC	2 cut(s)	17, 152
Hpy8I	GTNNAC	2 cut(s)	17, 152
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	21, 103
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	56
LpnPI	CCDG	4 cut(s)	45, 57, 84, 108
MaeI	CTAG	1 cut(s)	93
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	2 cut(s)	66, 191
MnlI	CCTC	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	187
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	1 cut(s)	135
NspI	RCATGY	1 cut(s)	135
PciI	ACATGT	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	116, 184
PscI	ACATGT	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
RsaI	GTAC	3 cut(s)	16, 23, 172
RsaNI	GTAC	3 cut(s)	15, 22, 171
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	1 cut(s)	49
SgeI	CNNG	9 cut(s)	72, 83, 84, 105, 125, 135, 144, 156, 167
Sse9I	AATT	2 cut(s)	66, 191
SspMI	CTAG	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	2 cut(s)	21, 103
TaqI	TCGA	1 cut(s)	55
TasI	AATT	2 cut(s)	66, 191
TatI	WGTACW	2 cut(s)	14, 21
TfiI	GAWTC	2 cut(s)	116, 184
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	2 cut(s)	24, 82
TspDTI	ATGAA	2 cut(s)	41, 54
TspRI	CASTG	2 cut(s)	24, 82
XceI	RCATGY	1 cut(s)	135
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	1 cut(s)	93

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.