Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018657

Physical Location & Seq

Genomic Coordinates Forward (+)

975669 .. 975932

Gene Structure 264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGAATAAGAGGAAGGCTCTTGATGAGGGGATTTCTGCAGAGACAGGTGTGTAGGATTGGTTGCTTCAAAAAGGGGACTGTATCAATCAGACCCAATGTTGAAGTATATGTTGGAAGCTGGAACCTCGGTGATGAAATACGAATTTATGGACGTGCAAACCTGAATAGGGCCTTTGATGGTGATATAGTGGCAGTCCAGCTTCTGCCTGGGGAGCAATGGCATGAGGATAAATCTATGGCTATAGCAGACGAAGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

87

Amino Acids

9.88

Weight (kDa)

9.23

Isoelectric Point (pI)

19.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rrp44_CSD1	PF17216	39 - 83	2.4e-06	Rrp44-like cold shock domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018657)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015477
rosa_multiflora	Rmu_sc0004077.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216950
rosa_samantha	Rh6BG002100 Rh6CG006800 Rh6CG006900 Rh6CG008100 Rh6DG007200 Rh6DG007300 Rh6DG009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	70, 104
AjiI	CACGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	96, 128
AluBI	AGCT	2 cut(s)	120, 202
AluI	AGCT	2 cut(s)	120, 202
Alw26I	GTCTC	1 cut(s)	37
AlwNI	CAGNNNCTG	1 cut(s)	205
AoxI	GGCC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	143, 194
BccI	CCATC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	210
BcoDI	GTCTC	1 cut(s)	37
BfmI	CTRYAG	2 cut(s)	38, 243
Bme1390I	CCNGG	1 cut(s)	210
BmgBI	CACGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	125
BmrFI	CCNGG	1 cut(s)	210
BplI	GAGNNNNNCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	127, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	127, 209
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMI	GCAATG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	37
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	125
BspMAI	CTGCAG	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	127, 209
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	82
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	2 cut(s)	38, 243
BsuRI	GGCC	1 cut(s)	173
BtrI	CACGTC	1 cut(s)	155
CaiI	CAGNNNCTG	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	171
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	5 cut(s)	19, 120, 173, 202, 242
CviKI_1	RGCY	5 cut(s)	19, 120, 173, 202, 242
EcoO109I	RGGNCCY	1 cut(s)	171
EcoRII	CCWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	227
FaiI	YATR	7 cut(s)	109, 111, 150, 188, 225, 239, 245
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	227
HphI	GGTGA	2 cut(s)	143, 194
Hpy188I	TCNGA	1 cut(s)	92
Hpy188III	TCNNGA	1 cut(s)	22
HpyAV	CCTTC	2 cut(s)	9, 248
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	2 cut(s)	40, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpySE526I	ACGT	1 cut(s)	154
Hsp92II	CATG	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	214
LpnPI	CCDG	6 cut(s)	32, 106, 176, 195, 212, 222
MaeII	ACGT	1 cut(s)	154
MluCI	AATT	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	5, 21, 137, 220
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	214
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	125
PspPI	GGNCC	1 cut(s)	171
PstI	CTGCAG	1 cut(s)	42
PstNI	CAGNNNCTG	1 cut(s)	205
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	1 cut(s)	210
SetI	ASST	7 cut(s)	51, 122, 129, 157, 165, 204, 259
SfcI	CTRYAG	2 cut(s)	38, 243
Sse9I	AATT	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	157
TasI	AATT	1 cut(s)	144
TspDTI	ATGAA	1 cut(s)	150
XapI	RAATTY	1 cut(s)	144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.