Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018657

Physical Location & Seq

Genomic Coordinates Reverse (-)

407652 .. 413937

Gene Structure 6286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG002100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGATAGAGATTAGCACTTGTCTTGGTCTTGGCTTTTTGTTTCTTGACGACGTGGTTGTTTGTTTTTGTGCCGCTATATTACATGCCAATGCAATGCAGTGTTACTATCGACTTGCTGCAATTCGGGCGGCTGCTCAATGGTATCAAACTCATCTGGCTGGTTGTGTACCTATTTTGCTATTAACTAATAATAATGAGAATAAGAGGAAGGTTCTTGATGAGGGGATTTCTACAGAGACAGGTGTGCAGGATTGGTTGCTTGATTGTGTGCGTCACTTCCTCTATTTCATTTCTCATGATGGAGTTACTAACATGGGAAAAATTTCAGTGGAGCGCTATGTGATATCATTGAGTCAACCAGATTTGCTTGATCTGCTTGTGCATCCTGCACCGCCAGATGATGTAAGCATGGAGAAAGTTGAAGATTTGAATGAAATCATTTATGCAGAGAGGATGAAGAAGGTGTTCATCGATCTGGTTCCTGGCAGTGCTGATGATGTTCCTAGAAAAACAATTCAACCACAAGATTCTGCTGGAGAAACATGTTCTATTTCGCAAGTTGTCCATTTGGCCGTATTGTTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000175 GO:0000176 GO:0000178 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0004532 GO:0004540 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009056 GO:0009057 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019439 GO:0019899 GO:0022613 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046700 GO:0051020 GO:0065007 GO:0065009 GO:0070013 GO:0071034 GO:0071043 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0098772 GO:0140098 GO:1901360 GO:1901361 GO:1901575 GO:1902494 GO:1905354

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

PIN_4 RNB Rrp44_CSD1 Rrp44_S1

Protein Analysis

195

Amino Acids

21.69

Weight (kDa)

4.8

Isoelectric Point (pI)

28.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018657)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015477
rosa_multiflora	Rmu_sc0004077.1_g000012
rosa_roxburghii	Rroxscaffold_7G00216950
rosa_samantha	Rh6BG002100 Rh6CG006800 Rh6CG006900 Rh6CG008100 Rh6DG007200 Rh6DG007300 Rh6DG009000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	72, 128, 392
AcoI	YGGCCR	1 cut(s)	570
AcsI	RAATTY	1 cut(s)	321
AfaI	GTAC	1 cut(s)	168
AfeI	AGCGCT	1 cut(s)	335
AflIII	ACRYGT	1 cut(s)	542
AgsI	TTSAA	3 cut(s)	422, 430, 518
AjiI	CACGTC	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	481
Alw26I	GTCTC	1 cut(s)	230
Aor51HI	AGCGCT	1 cut(s)	335
AoxI	GGCC	1 cut(s)	570
ApeKI	GCWGC	2 cut(s)	116, 131
ApoI	RAATTY	1 cut(s)	321
Asp700I	GAANNNNTTC	2 cut(s)	322, 464
AspLEI	GCGC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	103, 118
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	504
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	337
BisI	GCNGC	4 cut(s)	72, 117, 129, 132
BlsI	GCNGC	4 cut(s)	73, 118, 130, 133
Bme1390I	CCNGG	1 cut(s)	483
BmgBI	CACGTC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	555
Bsa29I	ATCGAT	1 cut(s)	471
Bse3DI	GCAATG	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	483
BseCI	ATCGAT	1 cut(s)	471
BseGI	GGATG	2 cut(s)	382, 459
BseMI	GCAATG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	103, 118
BsgI	GTGCAG	2 cut(s)	266, 372
BshFI	GGCC	1 cut(s)	572
BshVI	ATCGAT	1 cut(s)	471
BsmAI	GTCTC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	572
Bsp143I	GATC	2 cut(s)	370, 472
BspACI	CCGC	3 cut(s)	72, 128, 392
BspANI	GGCC	1 cut(s)	572
BspDI	ATCGAT	1 cut(s)	471
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	480
BsrDI	GCAATG	1 cut(s)	99
BssMI	GATC	2 cut(s)	370, 472
Bst2UI	CCWGG	1 cut(s)	483
BstF5I	GGATG	2 cut(s)	382, 459
BstH2I	RGCGCY	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	2 cut(s)	373, 475
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	2 cut(s)	370, 472
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 373
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	2 cut(s)	86, 546
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	103, 118
Bsu15I	ATCGAT	1 cut(s)	471
BsuRI	GGCC	1 cut(s)	572
BsuTUI	ATCGAT	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	52
BtsCI	GGATG	2 cut(s)	382, 459
BtsI	GCAGTG	2 cut(s)	104, 493
BtsIMutI	CAGTG	3 cut(s)	104, 333, 493
CciI	TCATGA	1 cut(s)	295
CfoI	GCGC	1 cut(s)	336
ClaI	ATCGAT	1 cut(s)	471
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	167
CviAII	CATG	5 cut(s)	83, 296, 313, 409, 543
CviJI	RGCY	4 cut(s)	33, 131, 158, 572
CviKI_1	RGCY	4 cut(s)	33, 131, 158, 572
CviQI	GTAC	1 cut(s)	167
DpnI	GATC	2 cut(s)	372, 474
DpnII	GATC	2 cut(s)	370, 472
EaeI	YGGCCR	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	345
Eco47III	AGCGCT	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	345
FaeI	CATG	5 cut(s)	86, 299, 316, 412, 546
FaiI	YATR	9 cut(s)	77, 84, 297, 314, 339, 410, 444, 544, 586
FatI	CATG	5 cut(s)	82, 295, 312, 408, 542
Fnu4HI	GCNGC	4 cut(s)	72, 117, 129, 132
FokI	GGATG	2 cut(s)	369, 466
Fsp4HI	GCNGC	4 cut(s)	72, 117, 129, 132
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	4 cut(s)	72, 117, 129, 132
GsuI	CTGGAG	1 cut(s)	555
HaeII	RGCGCY	1 cut(s)	337
HaeIII	GGCC	1 cut(s)	572
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	5 cut(s)	86, 299, 316, 412, 546
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HinfI	GANTC	2 cut(s)	352, 527
Hpy166II	GTNNAC	2 cut(s)	167, 356
Hpy188III	TCNNGA	3 cut(s)	44, 215, 296
Hpy8I	GTNNAC	2 cut(s)	167, 356
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	2 cut(s)	202, 454
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	7 cut(s)	92, 97, 119, 247, 382, 389, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 373
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	5 cut(s)	86, 299, 316, 412, 546
HspAI	GCGC	1 cut(s)	334
Kzo9I	GATC	2 cut(s)	370, 472
LmnI	GCTCC	1 cut(s)	331
Lsp1109I	GCAGC	2 cut(s)	103, 118
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	51
MaeIII	GTNAC	3 cut(s)	101, 272, 304
MalI	GATC	2 cut(s)	372, 474
MboI	GATC	2 cut(s)	370, 472
MboII	GAAGA	2 cut(s)	434, 469
MluCI	AATT	3 cut(s)	120, 321, 513
MlyI	GAGTC	1 cut(s)	361
MnlI	CCTC	4 cut(s)	198, 214, 290, 444
MroXI	GAANNNNTTC	2 cut(s)	322, 464
MseI	TTAA	1 cut(s)	182
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	125, 373
NdeII	GATC	2 cut(s)	370, 472
NlaIII	CATG	5 cut(s)	86, 299, 316, 412, 546
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	272
NspI	RCATGY	2 cut(s)	86, 546
PagI	TCATGA	1 cut(s)	295
PciI	ACATGT	1 cut(s)	542
PdmI	GAANNNNTTC	2 cut(s)	322, 464
PfeI	GAWTC	1 cut(s)	527
PkrI	GCNGC	4 cut(s)	73, 118, 130, 133
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PscI	ACATGT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	1 cut(s)	480
RsaI	GTAC	1 cut(s)	168
RsaNI	GTAC	1 cut(s)	167
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	4 cut(s)	72, 117, 129, 132
Sau3AI	GATC	2 cut(s)	370, 472
SchI	GAGTC	1 cut(s)	361
ScrFI	CCNGG	1 cut(s)	483
SetI	ASST	5 cut(s)	54, 172, 213, 244, 465
SfaNI	GCATC	1 cut(s)	391
SfcI	CTRYAG	1 cut(s)	231
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	120, 321, 513
SsiI	CCGC	3 cut(s)	72, 128, 392
SspMI	CTAG	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	481
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	2 cut(s)	109, 471
TasI	AATT	3 cut(s)	120, 321, 513
TauI	GCSGC	2 cut(s)	74, 131
TfiI	GAWTC	1 cut(s)	527
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	3 cut(s)	104, 333, 493
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	116, 131
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	4 cut(s)	277, 447, 457, 470
TspRI	CASTG	3 cut(s)	104, 333, 493
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	2 cut(s)	86, 546
XmnI	GAANNNNTTC	2 cut(s)	322, 464
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.