RLG00000015499

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0019840
Physical Location & Seq
Reverse (-)
66830576 .. 66830899
324 bp
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UTR
Exon/CDS
Intron
RLM00000015499

Sequence Viewer

Length: 324 bp
ATGAGGGAAACTTCTTTGAGTAATGGAGTTGTTTCTTTTCATCATGCTCCTATATTTGGGCTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAAAGATGTTATTTCTGCTGCAACAAGGCTGAATTTGGTCGGACCCCTTGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCATGCCAAAATGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTTTCTAGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

6.48

Isoelectric Point (pI)

40.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 6 - 67 2.5e-10 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019840)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322261 RchiOBHm_Chr1g0323071
rosa_laevigata RLG00000015499 RLG00000030368
rosa_multiflora Rmu_sc0004185.1_g000007
rosa_samantha Rh1AG050400 Rh1DG056900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 179
AcsI RAATTY 1 cut(s) 157
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 56, 178
AluBI AGCT 3 cut(s) 107, 218, 303
AluI AGCT 3 cut(s) 107, 218, 303
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 157
AspS9I GGNCC 2 cut(s) 167, 238
AvaII GGWCC 2 cut(s) 167, 238
BbvI GCAGC 1 cut(s) 130
BfaI CTAG 1 cut(s) 315
BisI GCNGC 2 cut(s) 144, 180
BlsI GCNGC 2 cut(s) 145, 181
BmcAI AGTACT 1 cut(s) 94
Bme18I GGWCC 2 cut(s) 167, 238
BmgT120I GGNCC 2 cut(s) 167, 238
BmiI GGNNCC 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 178
Bse1I ACTGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 56, 178
BseNI ACTGG 1 cut(s) 245
BseXI GCAGC 1 cut(s) 130
BsgI GTGCAG 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 56, 178
BspACI CCGC 1 cut(s) 179
BspLI GGNNCC 1 cut(s) 169
BsrI ACTGG 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 259
BstNSI RCATGY 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 167, 238
Csp6I GTAC 1 cut(s) 93
CviAII CATG 3 cut(s) 44, 112, 258
CviJI RGCY 6 cut(s) 61, 107, 154, 182, 218, 303
CviKI_1 RGCY 6 cut(s) 61, 107, 154, 182, 218, 303
CviQI GTAC 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 172
Eco32I GATATC 1 cut(s) 283
Eco47I GGWCC 2 cut(s) 167, 238
Eco57I CTGAAG 1 cut(s) 234
EcoRV GATATC 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 3 cut(s) 47, 115, 261
FatI CATG 3 cut(s) 43, 111, 257
Fnu4HI GCNGC 2 cut(s) 144, 180
Fsp4HI GCNGC 2 cut(s) 144, 180
FspBI CTAG 1 cut(s) 315
GluI GCNGC 2 cut(s) 144, 180
Hin1II CATG 3 cut(s) 47, 115, 261
HinfI GANTC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 167, 214
Hpy188III TCNNGA 1 cut(s) 315
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 146, 190, 289
Hsp92II CATG 3 cut(s) 47, 115, 261
LmnI GCTCC 2 cut(s) 52, 208
LpnPI CCDG 3 cut(s) 258, 275, 320
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 1 cut(s) 315
MluCI AATT 1 cut(s) 157
MmeI TCCRAC 2 cut(s) 63, 145
MnlI CCTC 1 cut(s) 244
NlaIII CATG 3 cut(s) 47, 115, 261
NlaIV GGNNCC 1 cut(s) 169
NspI RCATGY 1 cut(s) 261
PaeI GCATGC 1 cut(s) 261
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 2 cut(s) 145, 181
PspN4I GGNNCC 1 cut(s) 169
PspPI GGNCC 2 cut(s) 167, 238
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
SatI GCNGC 2 cut(s) 144, 180
Sau96I GGNCC 2 cut(s) 167, 238
ScaI AGTACT 1 cut(s) 94
SetI ASST 4 cut(s) 109, 220, 305, 309
SinI GGWCC 2 cut(s) 167, 238
SphI GCATGC 1 cut(s) 261
Sse9I AATT 1 cut(s) 157
SsiI CCGC 1 cut(s) 179
SspMI CTAG 1 cut(s) 315
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 1 cut(s) 242
TasI AATT 1 cut(s) 157
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 1 cut(s) 226
TseI GCWGC 1 cut(s) 143
TspDTI ATGAA 3 cut(s) 29, 100, 140
VpaK11BI GGWCC 2 cut(s) 167, 238
XapI RAATTY 1 cut(s) 157
XbaI TCTAGA 1 cut(s) 314
XceI RCATGY 1 cut(s) 261
XspI CTAG 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.