Rh1DG056900

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0019840
Physical Location & Seq
Reverse (-)
9210464 .. 9210895
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG056900.1

Sequence Viewer

Length: 432 bp
ATGAAGTGGGTAGAAACTAGAAAGGCGTCAATATCACAAGGGTCTGCACTCATGAGAGTGGCTGCAGCAATGTATTCAGAAATACCGTCTCTTAAATCTATGAGGGAAACTTCTTTATGTAATGGAGTTGTTTCTTTTCACCGTTCTCCTATGTATGGGCTTATATGTGGATTGCTTGGGTTGGATAGCAGTACTTCTCAAAGAGCTTTCATGTTTATCACAATGAGAGATGTTATTTTTGCCGCAACAAGGCTGAATTTGGTCGGACCCCTTGGTGCGGCTGTTCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACATTCCAGTTGAGGAAGCATGCCAAACTGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTTTCTAGACCATTCTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

143

Amino Acids

15.73

Weight (kDa)

8.35

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UreF PF01730 5 - 100 3.7e-13 UreF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019840)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322261 RchiOBHm_Chr1g0323071
rosa_laevigata RLG00000015499 RLG00000030368
rosa_multiflora Rmu_sc0004185.1_g000007
rosa_samantha Rh1AG050400 Rh1DG056900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 243, 278
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 1 cut(s) 193
AfiI CCNNNNNNNGG 3 cut(s) 155, 249, 277
AluBI AGCT 3 cut(s) 206, 317, 402
AluI AGCT 3 cut(s) 206, 317, 402
Alw26I GTCTC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 62, 65
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 1 cut(s) 266
BbvI GCAGC 2 cut(s) 49, 77
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 2 cut(s) 18, 414
BfmI CTRYAG 1 cut(s) 63
BisI GCNGC 4 cut(s) 63, 66, 243, 279
BlsI GCNGC 4 cut(s) 64, 67, 244, 280
BmcAI AGTACT 1 cut(s) 193
Bme18I GGWCC 1 cut(s) 266
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 268
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 1 cut(s) 271
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 249, 277
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 271
BseLI CCNNNNNNNGG 3 cut(s) 155, 249, 277
BseMI GCAATG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 344
BseXI GCAGC 2 cut(s) 49, 77
BsgI GTGCAG 2 cut(s) 30, 407
BslI CCNNNNNNNGG 3 cut(s) 155, 249, 277
BsmAI GTCTC 1 cut(s) 93
BsmBI CGTCTC 1 cut(s) 93
BspACI CCGC 2 cut(s) 243, 278
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 67
BsrDI GCAATG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 3 cut(s) 87, 143, 367
BstACI GRCGYC 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 360
BstSFI CTRYAG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 49, 77
Cac8I GCNNGC 1 cut(s) 358
CciI TCATGA 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 266
CseI GACGC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 192
CviAII CATG 3 cut(s) 52, 211, 357
CviJI RGCY 7 cut(s) 62, 160, 206, 253, 281, 317, 402
CviKI_1 RGCY 7 cut(s) 62, 160, 206, 253, 281, 317, 402
CviQI GTAC 1 cut(s) 192
Eco130I CCWWGG 1 cut(s) 271
Eco32I GATATC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 266
Eco57I CTGAAG 1 cut(s) 333
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 93
FaeI CATG 3 cut(s) 55, 214, 360
FatI CATG 3 cut(s) 51, 210, 356
Fnu4HI GCNGC 4 cut(s) 63, 66, 243, 279
Fsp4HI GCNGC 4 cut(s) 63, 66, 243, 279
FspBI CTAG 2 cut(s) 18, 414
GluI GCNGC 4 cut(s) 63, 66, 243, 279
HgaI GACGC 1 cut(s) 15
Hin1I GRCGYC 1 cut(s) 26
Hin1II CATG 3 cut(s) 55, 214, 360
HinfI GANTC 1 cut(s) 325
HphI GGTGA 1 cut(s) 131
Hpy188I TCNGA 3 cut(s) 79, 266, 313
Hpy188III TCNNGA 3 cut(s) 52, 414, 429
HpyAV CCTTC 1 cut(s) 328
HpyCH4III ACNGT 3 cut(s) 87, 143, 367
HpyCH4V TGCA 4 cut(s) 47, 65, 289, 388
Hsp92I GRCGYC 1 cut(s) 26
Hsp92II CATG 3 cut(s) 55, 214, 360
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 3 cut(s) 357, 374, 419
Lsp1109I GCAGC 2 cut(s) 49, 77
MaeI CTAG 2 cut(s) 18, 414
MluCI AATT 1 cut(s) 256
MmeI TCCRAC 2 cut(s) 162, 244
MnlI CCTC 2 cut(s) 96, 343
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 56
NlaIII CATG 3 cut(s) 55, 214, 360
NlaIV GGNNCC 1 cut(s) 268
NspI RCATGY 1 cut(s) 360
PaeI GCATGC 1 cut(s) 360
PagI TCATGA 1 cut(s) 51
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 4 cut(s) 64, 67, 244, 280
PspN4I GGNNCC 1 cut(s) 268
PspPI GGNCC 1 cut(s) 266
PstI CTGCAG 1 cut(s) 67
RsaI GTAC 1 cut(s) 193
RsaNI GTAC 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 56
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 4 cut(s) 63, 66, 243, 279
Sau96I GGNCC 1 cut(s) 266
ScaI AGTACT 1 cut(s) 193
SetI ASST 4 cut(s) 208, 319, 404, 408
SfcI CTRYAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 56
SphI GCATGC 1 cut(s) 360
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 243, 278
SspMI CTAG 2 cut(s) 18, 414
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 3 cut(s) 87, 143, 367
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 191
TauI GCSGC 2 cut(s) 245, 281
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 2 cut(s) 62, 65
TspDTI ATGAA 2 cut(s) 17, 199
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 1 cut(s) 256
XbaI TCTAGA 1 cut(s) 413
XceI RCATGY 1 cut(s) 360
XspI CTAG 2 cut(s) 18, 414
ZrmI AGTACT 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.