RLG00000030368

urease accessory protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0019840
Physical Location & Seq
Forward (+)
60185206 .. 60185879
674 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030368

Sequence Viewer

Length: 507 bp
ATGCTTCATCAGACTCCCTTTTACAATGGGGACAATGGCAACTGCTTGATTCTATCCTCCCAACTGGTGGTTTTGCTCATTCCTTTGGTCTTGAGGCTCCAAGCCAAGCTCGGATGGTCTCGAGTCCTGAAGATCTCCAAACTTTCTTACGAGTTAGAGAATACTGCAAGCTCACTCCTTCCTTTTGTGTACCCTATAACAATATCACCTGATTTGGAGACCTTGCGGAAACACGACAAGATGTTGGATGCAATGCTAACTAATGAACAGTACTTCTCAAAGAGCTTTCACGTTGGACCCCTTGGTGTTATTTCTGCTGCAACAAGGCTGAATTGGGTTGGACCCCTTGGTGTGGCTTTCCTGCAACATCATATTGCTCCTATCTCTGAAGCTATACTGAATCAATGGAAGGACCGTCCAGTTGAGGAAGCATGCCATTCTGTTCCTTTGCTTGATATCGTGCAGGGTTGTCATAGCTACCTGTTTTCTAGACTGTTCTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006807 GO:0008150 GO:0008152 GO:0043085 GO:0044093 GO:0050790 GO:0051336 GO:0051345 GO:0065007 GO:0065009 GO:1905181 GO:1905182
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UreF

Protein Analysis

169

Amino Acids

18.87

Weight (kDa)

7.04

Isoelectric Point (pI)

42.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019840)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0322261 RchiOBHm_Chr1g0323071
rosa_laevigata RLG00000015499 RLG00000030368
rosa_multiflora Rmu_sc0004185.1_g000007
rosa_samantha Rh1AG050400 Rh1DG056900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 67
AciI CCGC 1 cut(s) 226
AcuI CTGAAG 2 cut(s) 149, 408
AfaI GTAC 2 cut(s) 191, 272
AfiI CCNNNNNNNGG 2 cut(s) 67, 352
AluBI AGCT 5 cut(s) 109, 171, 285, 392, 477
AluI AGCT 5 cut(s) 109, 171, 285, 392, 477
Alw26I GTCTC 2 cut(s) 123, 212
Ama87I CYCGRG 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 317
AspS9I GGNCC 3 cut(s) 296, 341, 412
AsuHPI GGTGA 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 120
AvaII GGWCC 3 cut(s) 296, 341, 412
BbvI GCAGC 1 cut(s) 304
BccI CCATC 1 cut(s) 108
BcoDI GTCTC 2 cut(s) 123, 212
BfaI CTAG 1 cut(s) 489
BglII AGATCT 1 cut(s) 132
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmcAI AGTACT 1 cut(s) 272
Bme18I GGWCC 3 cut(s) 296, 341, 412
BmeT110I CYCGRG 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 296, 341, 412
BmiI GGNNCC 3 cut(s) 98, 298, 343
BmsI GCATC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 112
BsaI GGTCTC 2 cut(s) 123, 212
BsaJI CCNNGG 2 cut(s) 301, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 67, 352
Bse1I ACTGG 2 cut(s) 69, 419
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 2 cut(s) 301, 346
BseGI GGATG 2 cut(s) 119, 253
BseLI CCNNNNNNNGG 2 cut(s) 67, 352
BseMI GCAATG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 69, 419
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 120
BslFI GGGAC 1 cut(s) 44
BslI CCNNNNNNNGG 2 cut(s) 67, 352
BsmAI GTCTC 2 cut(s) 123, 212
BsmFI GGGAC 1 cut(s) 44
Bso31I GGTCTC 2 cut(s) 123, 212
BsoBI CYCGRG 1 cut(s) 120
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 1 cut(s) 226
BspLI GGNNCC 3 cut(s) 98, 298, 343
BspTNI GGTCTC 2 cut(s) 123, 212
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 2 cut(s) 69, 419
BssECI CCNNGG 2 cut(s) 301, 346
BssMI GATC 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 301, 346
Bst4CI ACNGT 3 cut(s) 270, 416, 495
BstC8I GCNNGC 2 cut(s) 169, 433
BstF5I GGATG 2 cut(s) 119, 253
BstKTI GATC 1 cut(s) 135
BstMAI GTCTC 2 cut(s) 123, 212
BstMBI GATC 1 cut(s) 132
BstNSI RCATGY 1 cut(s) 435
BstV1I GCAGC 1 cut(s) 304
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BtsCI GGATG 2 cut(s) 119, 253
Cac8I GCNNGC 2 cut(s) 169, 433
Cfr13I GGNCC 3 cut(s) 296, 341, 412
Csp6I GTAC 2 cut(s) 190, 271
CviAII CATG 1 cut(s) 432
CviJI RGCY 9 cut(s) 97, 104, 109, 171, 285, 328, 356, 392, 477
CviKI_1 RGCY 9 cut(s) 97, 104, 109, 171, 285, 328, 356, 392, 477
CviQI GTAC 2 cut(s) 190, 271
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 301, 346
Eco31I GGTCTC 2 cut(s) 123, 212
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 3 cut(s) 296, 341, 412
Eco57I CTGAAG 2 cut(s) 149, 408
Eco88I CYCGRG 1 cut(s) 120
EcoRV GATATC 1 cut(s) 457
EcoT14I CCWWGG 2 cut(s) 301, 346
ErhI CCWWGG 2 cut(s) 301, 346
FaeI CATG 1 cut(s) 435
FaiI YATR 5 cut(s) 197, 372, 395, 433, 474
FaqI GGGAC 1 cut(s) 44
FatI CATG 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 126, 260
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 1 cut(s) 489
GluI GCNGC 1 cut(s) 318
Hin1II CATG 1 cut(s) 435
HinfI GANTC 4 cut(s) 13, 49, 123, 400
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 12, 113, 388
Hpy188III TCNNGA 5 cut(s) 91, 120, 127, 489, 504
Hpy8I GTNNAC 1 cut(s) 190
HpyAV CCTTC 2 cut(s) 188, 403
HpyCH4III ACNGT 3 cut(s) 270, 416, 495
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 5 cut(s) 167, 251, 320, 364, 463
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 1 cut(s) 435
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 2 cut(s) 102, 382
LpnPI CCDG 7 cut(s) 50, 140, 222, 374, 432, 449, 494
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 238
MaeI CTAG 1 cut(s) 489
MaeII ACGT 1 cut(s) 291
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MboII GAAGA 1 cut(s) 142
MflI RGATCY 1 cut(s) 132
MluCI AATT 1 cut(s) 331
MlyI GAGTC 2 cut(s) 7, 132
MmeI TCCRAC 3 cut(s) 225, 274, 319
MnlI CCTC 3 cut(s) 67, 87, 418
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 435
NlaIV GGNNCC 3 cut(s) 98, 298, 343
NspI RCATGY 1 cut(s) 435
PaeI GCATGC 1 cut(s) 435
PaeR7I CTCGAG 1 cut(s) 120
PfeI GAWTC 2 cut(s) 49, 400
PflMI CCANNNNNTGG 1 cut(s) 67
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 2 cut(s) 7, 131
PpsI GAGTC 2 cut(s) 7, 131
PspN4I GGNNCC 3 cut(s) 98, 298, 343
PspPI GGNCC 3 cut(s) 296, 341, 412
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 2 cut(s) 191, 272
RsaNI GTAC 2 cut(s) 190, 271
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 1 cut(s) 132
Sau96I GGNCC 3 cut(s) 296, 341, 412
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 2 cut(s) 7, 132
SetI ASST 9 cut(s) 111, 173, 211, 224, 287, 294, 394, 479, 483
SfaNI GCATC 1 cut(s) 238
Sfr274I CTCGAG 1 cut(s) 120
SinI GGWCC 3 cut(s) 296, 341, 412
SlaI CTCGAG 1 cut(s) 120
SmlI CTYRAG 2 cut(s) 91, 120
SmoI CTYRAG 2 cut(s) 91, 120
SphI GCATGC 1 cut(s) 435
Sse9I AATT 1 cut(s) 331
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 489
StyI CCWWGG 2 cut(s) 301, 346
TaaI ACNGT 3 cut(s) 270, 416, 495
TaiI ACGT 1 cut(s) 294
TaqI TCGA 1 cut(s) 121
TasI AATT 1 cut(s) 331
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 2 cut(s) 49, 400
TseI GCWGC 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 67
VpaK11BI GGWCC 3 cut(s) 296, 341, 412
XbaI TCTAGA 1 cut(s) 488
XceI RCATGY 1 cut(s) 435
XhoI CTCGAG 1 cut(s) 120
XspI CTAG 1 cut(s) 489
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.