RLG00000015611

DCD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0022941
Physical Location & Seq
Forward (+)
154517 .. 156631
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015611

Sequence Viewer

Length: 396 bp
ATGGAGAACAACAACAACCAATCCTTCTGGCAATTTAGCGACCAGCTTCGTGTCCAGACATCCAATCTCGCCAACCTTTCCGTCAATGACTCGATCTGGAGCAGCTCATACGGCAGCAAGAGGCCTGATGCGAGAAGGAACTTCGACATCAAGGTCGGCGGTGAGGTGAATTCTTTGATTAATTTGACCCCAAAAGGGTCTGGGTTCAATGAAGGATTGGACTACAAGCAGAAAGGGTCCGACCCGAATGAGGGCTGGAACATCTTCAAGCCCAAGGCTTCTGAATTCAGGGACAGCATGAAAGGCGGGGGAGGCAATGGTGGAAGTATCAACGGCAGGATCAGCAGAGTGGCCGTGAGGCATACAAGCAAAAGCAACGACTCGAGGCTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dev_Cell_Death

Protein Analysis

132

Amino Acids

14.46

Weight (kDa)

9.84

Isoelectric Point (pI)

36.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022941)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015611
rosa_multiflora Rmu_sc0003337.1_g000036
rosa_samantha Rh5CG376000 Rh6CG105200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AciI CCGC 2 cut(s) 159, 306
AclWI GGATC 1 cut(s) 347
AcoI YGGCCR 1 cut(s) 351
AcsI RAATTY 2 cut(s) 169, 284
AfiI CCNNNNNNNGG 3 cut(s) 195, 250, 251
AgsI TTSAA 2 cut(s) 208, 268
AluBI AGCT 2 cut(s) 46, 105
AluI AGCT 2 cut(s) 46, 105
AlwI GGATC 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 382
AoxI GGCC 2 cut(s) 122, 351
ApeKI GCWGC 2 cut(s) 102, 114
ApoI RAATTY 2 cut(s) 169, 284
AseI ATTAAT 1 cut(s) 180
Asp700I GAANNNNTTC 1 cut(s) 263
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 173, 178
AvaI CYCGRG 1 cut(s) 382
AvaII GGWCC 1 cut(s) 237
BbvI GCAGC 2 cut(s) 114, 126
BceAI ACGGC 3 cut(s) 127, 338, 349
BisI GCNGC 2 cut(s) 103, 115
BlsI GCNGC 2 cut(s) 104, 116
Bme18I GGWCC 1 cut(s) 237
BmeT110I CYCGRG 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 238
BmsI GCATC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 250, 251
Bse3DI GCAATG 1 cut(s) 322
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 195, 250, 251
BseMI GCAATG 1 cut(s) 322
BseXI GCAGC 2 cut(s) 114, 126
BshFI GGCC 2 cut(s) 124, 353
BsiHKCI CYCGRG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 3 cut(s) 195, 250, 251
BsmFI GGGAC 1 cut(s) 305
BsnI GGCC 2 cut(s) 124, 353
BsoBI CYCGRG 1 cut(s) 382
Bsp143I GATC 2 cut(s) 93, 339
BspACI CCGC 2 cut(s) 159, 306
BspANI GGCC 2 cut(s) 124, 353
BspLI GGNNCC 1 cut(s) 238
BspPI GGATC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 322
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 2 cut(s) 93, 339
BssT1I CCWWGG 1 cut(s) 273
BstF5I GGATG 1 cut(s) 59
BstKTI GATC 2 cut(s) 96, 342
BstMBI GATC 2 cut(s) 93, 339
BstMWI GCNNNNNNNGC 4 cut(s) 111, 303, 312, 342
BstV1I GCAGC 2 cut(s) 114, 126
BsuRI GGCC 2 cut(s) 124, 353
BtsCI GGATG 1 cut(s) 59
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 298
CviJI RGCY 8 cut(s) 46, 105, 124, 255, 271, 278, 353, 388
CviKI_1 RGCY 8 cut(s) 46, 105, 124, 255, 271, 278, 353, 388
DpnI GATC 2 cut(s) 95, 341
DpnII GATC 2 cut(s) 93, 339
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 237
Eco88I CYCGRG 1 cut(s) 382
EcoRI GAATTC 2 cut(s) 169, 284
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 1 cut(s) 301
FaiI YATR 3 cut(s) 109, 299, 363
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 297
FauI CCCGC 1 cut(s) 299
Fnu4HI GCNGC 2 cut(s) 103, 115
FokI GGATG 1 cut(s) 46
Fsp4HI GCNGC 2 cut(s) 103, 115
GluI GCNGC 2 cut(s) 103, 115
GsuI CTGGAG 1 cut(s) 118
HaeIII GGCC 2 cut(s) 124, 353
Hin1II CATG 1 cut(s) 301
HinfI GANTC 2 cut(s) 89, 380
HphI GGTGA 2 cut(s) 173, 178
Hpy188I TCNGA 2 cut(s) 241, 283
Hpy188III TCNNGA 2 cut(s) 55, 97
HpyAV CCTTC 3 cut(s) 34, 129, 206
HpyF10VI GCNNNNNNNGC 4 cut(s) 111, 303, 312, 342
Hsp92II CATG 1 cut(s) 301
Kzo9I GATC 2 cut(s) 93, 339
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 9 cut(s) 13, 56, 68, 82, 138, 186, 241, 274, 322
Lsp1109I GCAGC 2 cut(s) 114, 126
LweI GCATC 1 cut(s) 118
MalI GATC 2 cut(s) 95, 341
MboI GATC 2 cut(s) 93, 339
MboII GAAGA 1 cut(s) 256
MluCI AATT 4 cut(s) 32, 169, 181, 284
MlyI GAGTC 2 cut(s) 83, 374
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 6 cut(s) 114, 157, 244, 305, 351, 378
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 180
MwoI GCNNNNNNNGC 4 cut(s) 111, 303, 312, 342
NdeII GATC 2 cut(s) 93, 339
NlaIII CATG 1 cut(s) 301
NlaIV GGNNCC 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 382
PceI AGGCCT 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 104, 116
PleI GAGTC 2 cut(s) 83, 374
PpsI GAGTC 2 cut(s) 83, 374
PshBI ATTAAT 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 237
PspXI VCTCGAGB 1 cut(s) 382
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 2 cut(s) 103, 115
Sau3AI GATC 2 cut(s) 93, 339
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 2 cut(s) 83, 374
SetI ASST 5 cut(s) 48, 78, 107, 156, 168
SfaNI GCATC 1 cut(s) 118
Sfr274I CTCGAG 1 cut(s) 382
SinI GGWCC 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 382
SmlI CTYRAG 1 cut(s) 382
SmoI CTYRAG 1 cut(s) 382
Sse9I AATT 4 cut(s) 32, 169, 181, 284
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 159, 306
StuI AGGCCT 1 cut(s) 124
StyI CCWWGG 1 cut(s) 273
TaqI TCGA 3 cut(s) 92, 144, 383
TasI AATT 4 cut(s) 32, 169, 181, 284
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 102, 114
TspDTI ATGAA 2 cut(s) 225, 314
TspGWI ACGGA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 237
VspI ATTAAT 1 cut(s) 180
XapI RAATTY 2 cut(s) 169, 284
XhoI CTCGAG 1 cut(s) 382
XmnI GAANNNNTTC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.