Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022930

Physical Location & Seq

Genomic Coordinates Forward (+)

636962 .. 637315

Gene Structure 354 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGAAGCAACGATGAGCTGAAGTCGGAAGTGCTGGAGCAGATGAAACAGCAGCTCACCACCGACGCCGGTAAAGTCATCATCATGTGGATGTCTACTTTCAAGAGAGTTTTGAACAGAAGAATCAAGAAATTAAACCCAGAAAGTATGCAAGGTTTCCAAGAGTGGCAGTCAGAAGGATACTTTCTCGTAGCTCCTTGTCTTCCCAATTCGATGTGCTGGGTTTCAATTTTCGCGCGGAGAAGGCGGTCCGTCTCTAGCAGTGGAAGGTCAGAAGCAACTGCGGCTGTGCTTTGCACAGCAGGTCGGAGAAGAAGGACCAGCAGGTCTGGCAAGTCCCGCGGCGTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009909 GO:0009910 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048519 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0060089 GO:0060860 GO:0060862 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

118

Amino Acids

13.36

Weight (kDa)

10.88

Isoelectric Point (pI)

89.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022930)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015687
rosa_roxburghii	Rroxscaffold_2G00119560 Rroxscaffold_2G00130950
rosa_samantha	Rh5AG470400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	325
Acc36I	ACCTGC	2 cut(s)	293, 315
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	3 cut(s)	236, 238, 342
AciI	CCGC	5 cut(s)	238, 247, 284, 340, 342
AcuI	CTGAAG	1 cut(s)	41
AcyI	GRCGYC	2 cut(s)	66, 345
AgsI	TTSAA	3 cut(s)	103, 115, 228
AluBI	AGCT	3 cut(s)	19, 55, 194
AluI	AGCT	3 cut(s)	19, 55, 194
Alw26I	GTCTC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	52
AspLEI	GCGC	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	249, 318
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	2 cut(s)	249, 318
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	64
BciVI	GTATCC	1 cut(s)	173
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	1 cut(s)	258
BfuAI	ACCTGC	2 cut(s)	293, 315
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	53, 285, 343
BlsI	GCNGC	3 cut(s)	54, 286, 344
Bme18I	GGWCC	2 cut(s)	249, 318
BmgT120I	GGNCC	2 cut(s)	249, 318
BpiI	GAAGAC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	56
BsaHI	GRCGYC	2 cut(s)	66, 345
BsaJI	CCNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	68
BseDI	CCNNGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	96
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	219
Bsh1236I	CGCG	3 cut(s)	236, 238, 342
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	322
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	322
BspACI	CCGC	5 cut(s)	238, 247, 284, 340, 342
BspFNI	CGCG	3 cut(s)	236, 238, 342
BspMI	ACCTGC	2 cut(s)	293, 315
BsrFI	RCCGGY	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	340
BssNI	GRCGYC	2 cut(s)	66, 345
BstACI	GRCGYC	2 cut(s)	66, 345
BstDSI	CCRYGG	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	96
BstFNI	CGCG	3 cut(s)	236, 238, 342
BstHHI	GCGC	1 cut(s)	238
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 284, 330, 339
BstUI	CGCG	3 cut(s)	236, 238, 342
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	96
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
BveI	ACCTGC	2 cut(s)	293, 315
CfoI	GCGC	1 cut(s)	238
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	249, 318
Cfr42I	CCGCGG	1 cut(s)	343
CpoI	CGGWCCG	1 cut(s)	249
CseI	GACGC	2 cut(s)	74, 334
CspI	CGGWCCG	1 cut(s)	249
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	4 cut(s)	19, 55, 194, 287
CviKI_1	RGCY	4 cut(s)	19, 55, 194, 287
DrdI	GACNNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	249, 318
Eco57I	CTGAAG	1 cut(s)	41
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	1 cut(s)	88
FaiI	YATR	2 cut(s)	86, 149
FaqI	GGGAC	1 cut(s)	322
FatI	CATG	1 cut(s)	84
FauI	CCCGC	1 cut(s)	347
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	3 cut(s)	53, 285, 343
FokI	GGATG	1 cut(s)	103
Fsp4HI	GCNGC	3 cut(s)	53, 285, 343
FspBI	CTAG	1 cut(s)	258
GlaI	GCGC	1 cut(s)	237
GluI	GCNGC	3 cut(s)	53, 285, 343
GsaI	CCCAGC	1 cut(s)	223
GsuI	CTGGAG	1 cut(s)	56
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	2 cut(s)	74, 334
HhaI	GCGC	1 cut(s)	238
Hin1I	GRCGYC	2 cut(s)	66, 345
Hin1II	CATG	1 cut(s)	88
Hin6I	GCGC	1 cut(s)	236
HinP1I	GCGC	1 cut(s)	236
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	4 cut(s)	28, 175, 274, 309
Hpy188III	TCNNGA	2 cut(s)	103, 127
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	4 cut(s)	170, 237, 261, 309
HpyCH4V	TGCA	2 cut(s)	151, 297
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 284, 330, 339
Hsp92I	GRCGYC	2 cut(s)	66, 345
Hsp92II	CATG	1 cut(s)	88
HspAI	GCGC	1 cut(s)	236
KspI	CCGCGG	1 cut(s)	343
LmnI	GCTCC	2 cut(s)	37, 199
LpnPI	CCDG	9 cut(s)	20, 82, 153, 205, 288, 310, 315, 334, 334
Lsp1109I	GCAGC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	258
MboII	GAAGA	3 cut(s)	132, 194, 324
MluCI	AATT	3 cut(s)	131, 208, 228
MmeI	TCCRAC	2 cut(s)	6, 287
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	2 cut(s)	83, 89
MspA1I	CMGCKG	1 cut(s)	342
MspI	CCGG	1 cut(s)	69
MvnI	CGCG	3 cut(s)	236, 238, 342
MwoI	GCNNNNNNNGC	4 cut(s)	244, 284, 330, 339
NlaIII	CATG	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	54, 286, 344
PspFI	CCCAGC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	249, 318
RseI	CAYNNNNRTG	2 cut(s)	83, 89
Rsr2I	CGGWCCG	1 cut(s)	249
RsrII	CGGWCCG	1 cut(s)	249
SacII	CCGCGG	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	3 cut(s)	53, 285, 343
Sau96I	GGNCC	2 cut(s)	249, 318
SetI	ASST	7 cut(s)	21, 57, 157, 196, 272, 307, 329
Sfr303I	CCGCGG	1 cut(s)	343
SgrBI	CCGCGG	1 cut(s)	343
SinI	GGWCC	2 cut(s)	249, 318
SmiMI	CAYNNNNRTG	2 cut(s)	83, 89
Sse9I	AATT	3 cut(s)	131, 208, 228
SsiI	CCGC	5 cut(s)	238, 247, 284, 340, 342
SspMI	CTAG	1 cut(s)	258
TaqI	TCGA	1 cut(s)	212
TasI	AATT	3 cut(s)	131, 208, 228
TauI	GCSGC	2 cut(s)	287, 345
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	268
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	268
VpaK11BI	GGWCC	2 cut(s)	249, 318
XmiI	GTMKAC	1 cut(s)	95
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.