Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0022930

Physical Location & Seq

Genomic Coordinates Reverse (-)

51422249 .. 51426299

Gene Structure 4051 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGCTGCTGAAATTGAAAGAGAAATTGAAGGTGCTGCCAAAGATTAGGAGGATGGAGGAGTTTGATGAGAATCCGATGGAGGGATTCGGTGCGGCTTTGCTCGCCGGGTACGAGTGGCAACCAGGACAAGGAGTTGGTAAGAATGCAAGGGAAGATGTTGATACTCTACGACCAACATCGTTGAGGTTGGTGGTAGTGAACTTCTCCCTTGGATCGTCGTCTGCTAAGAAGCGGGCGATACCCGCTTTGATACCAAATGATGCGGGAAGCGTGAACACTATAGTAAGAGACTTCGTCAAGTGTCGAAAGCCATATGAGATGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009870 GO:0009987 GO:0023052 GO:0031347 GO:0031349 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0097159 GO:0098542 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch_2 KOW

Protein Analysis

108

Amino Acids

12.03

Weight (kDa)

9.56

Isoelectric Point (pI)

22.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
G-patch_2	PF12656	14 - 58	7e-11	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022930)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000015687
rosa_roxburghii	Rroxscaffold_2G00119560 Rroxscaffold_2G00130950
rosa_samantha	Rh5AG470400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	92, 232, 243, 263
AclWI	GGATC	1 cut(s)	220
AfaI	GTAC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	80, 128
AgsI	TTSAA	2 cut(s)	16, 28
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	282
AlwI	GGATC	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	4, 34
AsuC2I	CCSGG	1 cut(s)	106
BbvI	GCAGC	1 cut(s)	21
BccI	CCATC	2 cut(s)	46, 70
BciT130I	CCWGG	1 cut(s)	123
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	282
BfaI	CTAG	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	3 cut(s)	5, 35, 93
BlsI	GCNGC	3 cut(s)	6, 36, 94
Bme1390I	CCNGG	2 cut(s)	106, 123
BmrFI	CCNGG	2 cut(s)	106, 123
BmsI	GCATC	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	106
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 128
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	57
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	2 cut(s)	80, 128
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	80, 128
BsmAI	GTCTC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	148
Bsp143I	GATC	1 cut(s)	212
BspACI	CCGC	4 cut(s)	92, 232, 243, 263
BspPI	GGATC	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	212
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	123
BstC8I	GCNNGC	2 cut(s)	102, 234
BstDEI	CTNAG	1 cut(s)	225
BstF5I	GGATG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	215
BstMAI	GTCTC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	212
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 242
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	104, 121
BstSFI	CTRYAG	1 cut(s)	279
BstV1I	GCAGC	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	57
Cac8I	GCNNGC	2 cut(s)	102, 234
Csp6I	GTAC	1 cut(s)	109
CviJI	RGCY	3 cut(s)	95, 310, 324
CviKI_1	RGCY	3 cut(s)	95, 310, 324
CviQI	GTAC	1 cut(s)	109
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	1 cut(s)	214
DpnII	GATC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaiI	YATR	3 cut(s)	281, 313, 315
FauI	CCCGC	3 cut(s)	225, 250, 256
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	3 cut(s)	5, 35, 93
FokI	GGATG	1 cut(s)	64
Fsp4HI	GCNGC	3 cut(s)	5, 35, 93
FspBI	CTAG	1 cut(s)	325
GluI	GCNGC	3 cut(s)	5, 35, 93
HapII	CCGG	1 cut(s)	105
HinfI	GANTC	2 cut(s)	70, 84
HpaII	CCGG	1 cut(s)	105
Hpy166II	GTNNAC	2 cut(s)	199, 274
Hpy188I	TCNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	199, 274
Hpy99I	CGWCG	1 cut(s)	220
HpyAV	CCTTC	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 242
HpyF3I	CTNAG	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	212
LpnPI	CCDG	3 cut(s)	108, 118, 135
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	1 cut(s)	325
MalI	GATC	1 cut(s)	214
MboI	GATC	1 cut(s)	212
MboII	GAAGA	1 cut(s)	164
MluCI	AATT	2 cut(s)	11, 23
MnlI	CCTC	4 cut(s)	42, 49, 73, 177
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	106, 123
Mva1269I	GAATGC	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	101, 242
NciI	CCSGG	1 cut(s)	106
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	212
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PctI	GAATGC	1 cut(s)	148
PfeI	GAWTC	2 cut(s)	70, 84
PflFI	GACNNNGTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	6, 36, 94
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PsyI	GACNNNGTC	1 cut(s)	293
RsaI	GTAC	1 cut(s)	110
RsaNI	GTAC	1 cut(s)	109
SatI	GCNGC	3 cut(s)	5, 35, 93
Sau3AI	GATC	1 cut(s)	212
ScrFI	CCNGG	2 cut(s)	106, 123
SetI	ASST	3 cut(s)	33, 188, 326
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	1 cut(s)	279
Sse9I	AATT	2 cut(s)	11, 23
SsiI	CCGC	4 cut(s)	92, 232, 243, 263
SspMI	CTAG	1 cut(s)	325
StyD4I	CCNGG	2 cut(s)	104, 121
StyI	CCWWGG	1 cut(s)	208
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	11, 23
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	2 cut(s)	70, 84
TseI	GCWGC	2 cut(s)	4, 34
Tth111I	GACNNNGTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.