Rroxscaffold_2G00130950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0022930
Physical Location & Seq
Forward (+)
67435033 .. 67448241
13209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130950.1

Sequence Viewer

Length: 834 bp
ATGGTAAGCGACGTCGTAGGTGACCGGCTCAATTCGCATCTCGGGGAGTCCACTCTCATTCAAGAACTTCAAAGCCGTACCTTCACACACCCAGAAGCTCAAAAGAAACATCAATCATCGGTGAACAGCAAAAAAGGAGAATATTTTCTCACTTCTGCTACTGCTACTGTTCATTCAATTAAATTAGCAAGTTGTCCTAGGGCGAATCCCTTGGCATATTCCTCTTCAACGAAACTTTCTTTGATAGATACTCTACGACCAACGTCGTTGAGGTTGGTGGTAGTGAACTTCTCCTTTGGATCGTTATCTGCTAAAGAGCGGGCGAAACTTGTCTCGATACCAAATGATGTGGGAAGTGTGTACACGATATTAAGATGCTCCGTCAAGCGTCGAAAGCCATATAAGATGAACTTGACTCATGTTTGGGCAACAGCGTGGACTCTTTTAAATGAGACTATGGAGTCCCAAAATCTCCAAAACACCTTCTACCACAATCCCACCAAAAACCATGGGATTGTGGAAGCCTCTCTCACTTGTTCAACTCTTCCATTCAGTTTGTCATTCTCTCAACATTCTCACCTAAACCTGCTGCAATTCAACTTCACCCCCCTCTATGGAAGAACAGAGCTCAAGGGAAGAATGGGAAGCAACGATGAGTTGAAGTCGGAAGTGCTGGAGCGAGATGAAACGAAGCTCGCCACCGACGCCGGTAAAGTTATCGCCATGTGGATGTCTATTTTCAAGATAGTTTTGAACAGAAGAATCAAGAAATTAAACCCAGAAAGTATGCAAGGTTTCCAAGAGTGGCAGCAGTCGAAGGATACTTCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

277

Amino Acids

31.2

Weight (kDa)

9.61

Isoelectric Point (pI)

34.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022930)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015687
rosa_roxburghii Rroxscaffold_2G00119560 Rroxscaffold_2G00130950
rosa_samantha Rh5AG470400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 594
AccBSI CCGCTC 1 cut(s) 319
AciI CCGC 1 cut(s) 319
AclWI GGATC 1 cut(s) 307
AcyI GRCGYC 2 cut(s) 12, 705
AfaI GTAC 2 cut(s) 79, 362
AfiI CCNNNNNNNGG 1 cut(s) 614
AgsI TTSAA 9 cut(s) 62, 71, 177, 228, 540, 598, 661, 742, 754
AluBI AGCT 3 cut(s) 98, 628, 694
AluI AGCT 3 cut(s) 98, 628, 694
Alw21I GWGCWC 1 cut(s) 630
Alw26I GTCTC 2 cut(s) 337, 446
AlwI GGATC 1 cut(s) 307
Ama87I CYCGRG 1 cut(s) 41
ApeKI GCWGC 2 cut(s) 589, 808
Asp700I GAANNNNTTC 1 cut(s) 144
AspA2I CCTAGG 1 cut(s) 197
AsuHPI GGTGA 4 cut(s) 32, 133, 569, 595
AvaI CYCGRG 1 cut(s) 41
AvrII CCTAGG 1 cut(s) 197
BanII GRGCYC 1 cut(s) 630
Bbv12I GWGCWC 1 cut(s) 630
BbvI GCAGC 2 cut(s) 576, 820
BceAI ACGGC 1 cut(s) 60
BciVI GTATCC 1 cut(s) 814
BcoDI GTCTC 2 cut(s) 337, 446
BfaI CTAG 1 cut(s) 198
BfuAI ACCTGC 1 cut(s) 594
BfuI GTATCC 1 cut(s) 814
BisI GCNGC 2 cut(s) 590, 809
BlnI CCTAGG 1 cut(s) 197
BlsI GCNGC 2 cut(s) 591, 810
BmeT110I CYCGRG 1 cut(s) 41
BmsI GCATC 2 cut(s) 46, 365
BoxI GACNNNNGTC 1 cut(s) 262
BpmI CTGGAG 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 614
BsaBI GATNNNNATC 1 cut(s) 304
BsaHI GRCGYC 2 cut(s) 12, 705
BsaJI CCNNGG 3 cut(s) 197, 210, 508
Bsc4I CCNNNNNNNGG 1 cut(s) 614
Bse118I RCCGGY 2 cut(s) 24, 707
Bse8I GATNNNNATC 1 cut(s) 304
BseDI CCNNGG 3 cut(s) 197, 210, 508
BseGI GGATG 1 cut(s) 735
BseJI GATNNNNATC 1 cut(s) 304
BseLI CCNNNNNNNGG 1 cut(s) 614
BseXI GCAGC 2 cut(s) 576, 820
BsiHKAI GWGCWC 1 cut(s) 630
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 2 cut(s) 25, 708
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 1 cut(s) 614
BsmAI GTCTC 2 cut(s) 337, 446
BsmFI GGGAC 1 cut(s) 448
BsoBI CYCGRG 1 cut(s) 41
Bsp1286I GDGCHC 1 cut(s) 630
Bsp1407I TGTACA 1 cut(s) 360
Bsp143I GATC 1 cut(s) 299
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 319
BspMI ACCTGC 1 cut(s) 594
BspPI GGATC 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 319
BsrFI RCCGGY 2 cut(s) 24, 707
BsrGI TGTACA 1 cut(s) 360
BssAI RCCGGY 2 cut(s) 24, 707
BssECI CCNNGG 3 cut(s) 197, 210, 508
BssMI GATC 1 cut(s) 299
BssNI GRCGYC 2 cut(s) 12, 705
BssT1I CCWWGG 3 cut(s) 197, 210, 508
Bst4CI ACNGT 1 cut(s) 169
Bst6I CTCTTC 2 cut(s) 229, 549
BstACI GRCGYC 2 cut(s) 12, 705
BstAUI TGTACA 1 cut(s) 360
BstC8I GCNNGC 2 cut(s) 321, 696
BstDSI CCRYGG 1 cut(s) 508
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 1 cut(s) 735
BstKTI GATC 1 cut(s) 302
BstMAI GTCTC 2 cut(s) 337, 446
BstMBI GATC 1 cut(s) 299
BstMWI GCNNNNNNNGC 3 cut(s) 34, 394, 704
BstPAI GACNNNNGTC 1 cut(s) 262
BstPI GGTNACC 1 cut(s) 20
BstV1I GCAGC 2 cut(s) 576, 820
BsuI GTATCC 1 cut(s) 814
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 1 cut(s) 735
BveI ACCTGC 1 cut(s) 594
Cac8I GCNNGC 2 cut(s) 321, 696
Cfr10I RCCGGY 2 cut(s) 24, 707
CseI GACGC 2 cut(s) 377, 713
Csp6I GTAC 2 cut(s) 78, 361
CspCI CAANNNNNGTGG 2 cut(s) 330, 365
CviAII CATG 3 cut(s) 419, 509, 724
CviJI RGCY 7 cut(s) 28, 75, 98, 397, 524, 628, 694
CviKI_1 RGCY 7 cut(s) 28, 75, 98, 397, 524, 628, 694
CviQI GTAC 2 cut(s) 78, 361
DpnI GATC 1 cut(s) 301
DpnII GATC 1 cut(s) 299
DraI TTTAAA 1 cut(s) 447
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 2 cut(s) 229, 549
EarI CTCTTC 2 cut(s) 229, 549
Ecl136II GAGCTC 1 cut(s) 628
Eco130I CCWWGG 3 cut(s) 197, 210, 508
Eco24I GRGCYC 1 cut(s) 630
Eco53kI GAGCTC 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 41
Eco91I GGTNACC 1 cut(s) 20
EcoICRI GAGCTC 1 cut(s) 628
EcoO65I GGTNACC 1 cut(s) 20
EcoT14I CCWWGG 3 cut(s) 197, 210, 508
EcoT38I GRGCYC 1 cut(s) 630
ErhI CCWWGG 3 cut(s) 197, 210, 508
FaeI CATG 3 cut(s) 422, 512, 727
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FaqI GGGAC 1 cut(s) 448
FatI CATG 3 cut(s) 418, 508, 723
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 2 cut(s) 590, 809
FokI GGATG 1 cut(s) 742
FriOI GRGCYC 1 cut(s) 630
Fsp4HI GCNGC 2 cut(s) 590, 809
FspBI CTAG 1 cut(s) 198
GluI GCNGC 2 cut(s) 590, 809
GsuI CTGGAG 1 cut(s) 695
HapII CCGG 2 cut(s) 25, 708
HgaI GACGC 2 cut(s) 377, 713
Hin1I GRCGYC 2 cut(s) 12, 705
Hin1II CATG 3 cut(s) 422, 512, 727
HinfI GANTC 6 cut(s) 47, 205, 415, 439, 461, 762
HpaII CCGG 2 cut(s) 25, 708
HphI GGTGA 4 cut(s) 32, 133, 569, 595
Hpy166II GTNNAC 6 cut(s) 51, 124, 286, 361, 363, 438
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 4 cut(s) 62, 334, 742, 766
Hpy8I GTNNAC 6 cut(s) 51, 124, 286, 361, 363, 438
Hpy99I CGWCG 5 cut(s) 14, 17, 268, 393, 707
HpyAV CCTTC 3 cut(s) 91, 493, 811
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 12, 263
HpyCH4V TGCA 2 cut(s) 592, 790
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 394, 704
HpySE526I ACGT 2 cut(s) 12, 263
Hsp92I GRCGYC 2 cut(s) 12, 705
Hsp92II CATG 3 cut(s) 422, 512, 727
Kzo9I GATC 1 cut(s) 299
LmnI GCTCC 2 cut(s) 383, 676
LpnPI CCDG 6 cut(s) 38, 105, 599, 659, 721, 792
Lsp1109I GCAGC 2 cut(s) 576, 820
LweI GCATC 2 cut(s) 46, 365
MaeI CTAG 1 cut(s) 198
MaeII ACGT 2 cut(s) 12, 263
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 301
MbiI CCGCTC 1 cut(s) 319
MboI GATC 1 cut(s) 299
MboII GAAGA 5 cut(s) 216, 536, 630, 648, 771
MhlI GDGCHC 1 cut(s) 630
MluCI AATT 5 cut(s) 31, 177, 182, 593, 770
MlyI GAGTC 4 cut(s) 56, 409, 433, 470
MmeI TCCRAC 1 cut(s) 645
MnlI CCTC 4 cut(s) 232, 264, 535, 620
MroXI GAANNNNTTC 1 cut(s) 144
MseI TTAA 4 cut(s) 180, 371, 446, 773
MslI CAYNNNNRTG 1 cut(s) 728
MspI CCGG 2 cut(s) 25, 708
MwoI GCNNNNNNNGC 3 cut(s) 34, 394, 704
NcoI CCATGG 1 cut(s) 508
NdeII GATC 1 cut(s) 299
NlaIII CATG 3 cut(s) 422, 512, 727
NmuCI GTSAC 1 cut(s) 20
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 2 cut(s) 205, 762
PkrI GCNGC 2 cut(s) 591, 810
PleI GAGTC 4 cut(s) 55, 409, 433, 469
PpsI GAGTC 4 cut(s) 55, 409, 433, 469
PshAI GACNNNNGTC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 630
PspEI GGTNACC 1 cut(s) 20
RsaI GTAC 2 cut(s) 79, 362
RsaNI GTAC 2 cut(s) 78, 361
RseI CAYNNNNRTG 1 cut(s) 728
SacI GAGCTC 1 cut(s) 630
SaqAI TTAA 4 cut(s) 180, 371, 446, 773
SatI GCNGC 2 cut(s) 590, 809
Sau3AI GATC 1 cut(s) 299
SchI GAGTC 4 cut(s) 56, 409, 433, 470
SduI GDGCHC 1 cut(s) 630
SfaNI GCATC 2 cut(s) 46, 365
SmiMI CAYNNNNRTG 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
Sse9I AATT 5 cut(s) 31, 177, 182, 593, 770
SsiI CCGC 1 cut(s) 319
SspI AATATT 1 cut(s) 143
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 630
StyI CCWWGG 3 cut(s) 197, 210, 508
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 15, 266
TaqI TCGA 3 cut(s) 335, 391, 815
TasI AATT 5 cut(s) 31, 177, 182, 593, 770
TatI WGTACW 1 cut(s) 360
TfiI GAWTC 2 cut(s) 205, 762
Tru1I TTAA 4 cut(s) 180, 371, 446, 773
Tru9I TTAA 4 cut(s) 180, 371, 446, 773
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 589, 808
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 3 cut(s) 161, 422, 699
TspGWI ACGGA 1 cut(s) 370
XmaJI CCTAGG 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 1 cut(s) 198
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.