Rh5AG470400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0022930
Physical Location & Seq
Forward (+)
80613712 .. 80614375
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG470400.1

Sequence Viewer

Length: 342 bp
ATGTGGATGTCTACTTTCAAGAGAGTTTTGAACAGAAGAATCAAGAAATTAAACCCAGAAAGTATGCAAGGTTTCCAAGAGTGGCAGTTAGAAGGATACTTCCTCGTAGCTCCGTGTCTTTCCAATCCGACATGCTGGGTTTCAATTTTTGCGCGGAGAAGGCTGTCCTTCTCTAGCAGTCAAAGGTCAGAAGCAACTGTGACTGTGCTTTGCATAGAAGGTCAGAGAAAAAGGACCAGCAGGTCTGGGACCTGGTGGGAAGTCCGGGGGCGTCTGGCAGAGGCACGGTTTGAGGAAGAAGTAGGCTCATTTGTGTTGCTTATTTCTATCAAATGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

13.24

Weight (kDa)

9.83

Isoelectric Point (pI)

61.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022930)

Species Orthologous Gene IDs
rosa_laevigata RLG00000015687
rosa_roxburghii Rroxscaffold_2G00119560 Rroxscaffold_2G00130950
rosa_samantha Rh5AG470400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 241
Acc36I ACCTGC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 11
AccII CGCG 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 271
AgsI TTSAA 3 cut(s) 19, 31, 144
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 234, 249
AsuC2I CCSGG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 234, 249
BciT130I CCWGG 1 cut(s) 253
BciVI GTATCC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 266
BfaI CTAG 1 cut(s) 174
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 1 cut(s) 89
Bme1390I CCNGG 2 cut(s) 253, 266
Bme18I GGWCC 2 cut(s) 234, 249
BmgT120I GGNCC 2 cut(s) 234, 249
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 253, 266
BpuMI CCSGG 1 cut(s) 266
BsaHI GRCGYC 1 cut(s) 271
BsaJI CCNNGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 253
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 12
BseYI CCCAGC 1 cut(s) 135
Bsh1236I CGCG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 265
BslFI GGGAC 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 262
BspACI CCGC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 250
BspMI ACCTGC 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 3 cut(s) 199, 205, 288
BstACI GRCGYC 1 cut(s) 271
BstF5I GGATG 1 cut(s) 12
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 1 cut(s) 154
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 253
BstNSI RCATGY 1 cut(s) 135
BstSCI CCNGG 2 cut(s) 251, 264
BstUI CGCG 1 cut(s) 154
BsuI GTATCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 234, 249
CseI GACGC 1 cut(s) 260
CsiI ACCWGGT 1 cut(s) 251
CviAII CATG 1 cut(s) 132
CviJI RGCY 3 cut(s) 110, 163, 306
CviKI_1 RGCY 3 cut(s) 110, 163, 306
DrdI GACNNNNNNGTC 1 cut(s) 241
DseDI GACNNNNNNGTC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 234, 249
EcoO109I RGGNCCY 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 135
FaiI YATR 3 cut(s) 65, 133, 215
FaqI GGGAC 1 cut(s) 262
FatI CATG 1 cut(s) 131
FblI GTMKAC 1 cut(s) 11
FokI GGATG 1 cut(s) 19
FspBI CTAG 1 cut(s) 174
GlaI GCGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 139
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 1 cut(s) 135
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 39
HpaII CCGG 1 cut(s) 265
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 3 cut(s) 129, 190, 225
Hpy188III TCNNGA 2 cut(s) 19, 43
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 4 cut(s) 86, 153, 178, 212
HpyCH4III ACNGT 3 cut(s) 199, 205, 288
HpyCH4V TGCA 2 cut(s) 67, 213
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 1 cut(s) 135
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 115
LpnPI CCDG 9 cut(s) 69, 121, 226, 231, 238, 250, 260, 265, 278
MabI ACCWGGT 1 cut(s) 251
MaeI CTAG 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 199
MboII GAAGA 2 cut(s) 48, 308
MluCI AATT 2 cut(s) 47, 144
MmeI TCCRAC 1 cut(s) 152
MnlI CCTC 3 cut(s) 113, 274, 286
MseI TTAA 1 cut(s) 50
MspI CCGG 1 cut(s) 265
MspR9I CCNGG 2 cut(s) 253, 266
MvaI CCWGG 1 cut(s) 253
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 266
NlaIII CATG 1 cut(s) 135
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 199
NspI RCATGY 1 cut(s) 135
PfeI GAWTC 1 cut(s) 39
PpuMI RGGWCCY 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 135
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 234, 249
PspPPI RGGWCCY 1 cut(s) 249
SaqAI TTAA 1 cut(s) 50
Sau96I GGNCC 2 cut(s) 234, 249
ScrFI CCNGG 2 cut(s) 253, 266
SetI ASST 6 cut(s) 73, 112, 188, 223, 245, 254
SexAI ACCWGGT 1 cut(s) 251
SinI GGWCC 2 cut(s) 234, 249
Sse9I AATT 2 cut(s) 47, 144
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 2 cut(s) 251, 264
TaaI ACNGT 3 cut(s) 199, 205, 288
TasI AATT 2 cut(s) 47, 144
TfiI GAWTC 1 cut(s) 39
Tru1I TTAA 1 cut(s) 50
Tru9I TTAA 1 cut(s) 50
TseFI GTSAC 1 cut(s) 199
Tsp45I GTSAC 1 cut(s) 199
TspGWI ACGGA 1 cut(s) 102
VpaK11BI GGWCC 2 cut(s) 234, 249
XceI RCATGY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 11
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.