Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0022929

Physical Location & Seq

Genomic Coordinates Forward (+)

5237488 .. 5238382

Gene Structure 895 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016271

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGATCATTGAGGATCAAGATTCCGGGTCGGATAGCCCCGAATCGAATTCCTTCGATTTCGACTCCTGTGAGCAAAACGATAAAGATTCGGAGGGTGATTACGAGAGCGAAACTACTGAATCGAATTGTACTGATGATTTTGGGGTTTTTACCCGAAATGGGATGATGTTCAGAGTGAATGATGTGAGTGAGGAGTACGAGAGTATTGTCAAGAGCTTTGCTATGGGTATGGGATTGGCGGGCGGAGTTACGGAGGAGAAGAACGACACCAGCGGCAGCGGCGGGTATGTGAGGGCGGACCAGATAAATCTGAAGAGCTTGGATGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAACAACAAATCCGAATATTAGGTATGCTTAGTACAGCGGATCAAGAGATGAGATTGCGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

152

Amino Acids

17.09

Weight (kDa)

4.31

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022929)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016271
rosa_multiflora	Rmu_sc0000694.1_g000006
rosa_samantha	Rh2BG341900 Rh2DG546900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	239, 243, 273, 279, 282, 296, 428, 448
AclWI	GGATC	2 cut(s)	21, 438
AcsI	RAATTY	1 cut(s)	46
AcuI	CTGAAG	2 cut(s)	317, 332
AfaI	GTAC	3 cut(s)	130, 197, 424
AfiI	CCNNNNNNNGG	1 cut(s)	159
AloI	GAACNNNNNNTCC	2 cut(s)	384, 416
AluBI	AGCT	3 cut(s)	216, 318, 331
AluI	AGCT	3 cut(s)	216, 318, 331
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	21, 438
ApeKI	GCWGC	2 cut(s)	276, 328
ApoI	RAATTY	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	1 cut(s)	25
AsuHPI	GGTGA	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	288, 340
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	25
BcoDI	GTCTC	1 cut(s)	375
BisI	GCNGC	4 cut(s)	274, 277, 280, 329
BlsI	GCNGC	4 cut(s)	275, 278, 281, 330
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	1 cut(s)	349
BpuMI	CCSGG	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseGI	GGATG	2 cut(s)	168, 328
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	335
BseRI	GAGGAG	2 cut(s)	206, 269
BseXI	GCAGC	2 cut(s)	288, 340
BsiSI	CCGG	1 cut(s)	24
BslI	CCNNNNNNNGG	1 cut(s)	159
BsmAI	GTCTC	1 cut(s)	375
Bso31I	GGTCTC	1 cut(s)	375
Bsp143I	GATC	3 cut(s)	3, 13, 430
BspACI	CCGC	8 cut(s)	239, 243, 273, 279, 282, 296, 428, 448
BspCNI	CTCAG	1 cut(s)	336
BspPI	GGATC	2 cut(s)	21, 438
BspQI	GCTCTTC	1 cut(s)	308
BspTNI	GGTCTC	1 cut(s)	375
BssMI	GATC	3 cut(s)	3, 13, 430
Bst6I	CTCTTC	1 cut(s)	308
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	344, 419
BstF5I	GGATG	2 cut(s)	168, 328
BstKTI	GATC	3 cut(s)	6, 16, 433
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	3, 13, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	279, 337
BstSCI	CCNGG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	288, 340
BtsCI	GGATG	2 cut(s)	168, 328
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	298
Csp6I	GTAC	3 cut(s)	129, 196, 423
CviAII	CATG	1 cut(s)	354
CviJI	RGCY	4 cut(s)	36, 216, 318, 331
CviKI_1	RGCY	4 cut(s)	36, 216, 318, 331
CviQI	GTAC	3 cut(s)	129, 196, 423
DdeI	CTNAG	2 cut(s)	344, 419
DpnI	GATC	3 cut(s)	5, 15, 432
DpnII	GATC	3 cut(s)	3, 13, 430
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
EciI	GGCGGA	2 cut(s)	258, 311
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	2 cut(s)	317, 332
EcoRI	GAATTC	1 cut(s)	46
FaeI	CATG	1 cut(s)	357
FaiI	YATR	6 cut(s)	224, 230, 288, 355, 362, 416
FatI	CATG	1 cut(s)	353
FauI	CCCGC	2 cut(s)	232, 275
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	274, 277, 280, 329
FokI	GGATG	2 cut(s)	175, 335
Fsp4HI	GCNGC	4 cut(s)	274, 277, 280, 329
GluI	GCNGC	4 cut(s)	274, 277, 280, 329
HapII	CCGG	1 cut(s)	24
Hin1II	CATG	1 cut(s)	357
HinfI	GANTC	5 cut(s)	20, 41, 62, 86, 119
HpaII	CCGG	1 cut(s)	24
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	7 cut(s)	31, 91, 173, 312, 336, 345, 404
Hpy188III	TCNNGA	3 cut(s)	17, 211, 434
HpyAV	CCTTC	1 cut(s)	61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	279, 337
HpyF3I	CTNAG	2 cut(s)	344, 419
Hsp92II	CATG	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	3 cut(s)	3, 13, 430
LguI	GCTCTTC	1 cut(s)	308
LpnPI	CCDG	7 cut(s)	37, 79, 283, 314, 334, 374, 398
Lsp1109I	GCAGC	2 cut(s)	288, 340
LweI	GCATC	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	3 cut(s)	5, 15, 432
MboI	GATC	3 cut(s)	3, 13, 430
MboII	GAAGA	3 cut(s)	271, 325, 379
MluCI	AATT	2 cut(s)	46, 124
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	9
MnlI	CCTC	5 cut(s)	4, 85, 184, 247, 285
MroXI	GAANNNNTTC	1 cut(s)	50
MspA1I	CMGCKG	3 cut(s)	273, 279, 428
MspI	CCGG	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	2 cut(s)	279, 337
NciI	CCSGG	1 cut(s)	25
NdeII	GATC	3 cut(s)	3, 13, 430
NlaIII	CATG	1 cut(s)	357
PciSI	GCTCTTC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	50
PfeI	GAWTC	4 cut(s)	20, 41, 86, 119
PkrI	GCNGC	4 cut(s)	275, 278, 281, 330
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	298
RsaI	GTAC	3 cut(s)	130, 197, 424
RsaNI	GTAC	3 cut(s)	129, 196, 423
SapI	GCTCTTC	1 cut(s)	308
SatI	GCNGC	4 cut(s)	274, 277, 280, 329
Sau3AI	GATC	3 cut(s)	3, 13, 430
Sau96I	GGNCC	1 cut(s)	298
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	25
SetI	ASST	4 cut(s)	218, 320, 333, 415
SfaNI	GCATC	1 cut(s)	349
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	2 cut(s)	46, 124
SsiI	CCGC	8 cut(s)	239, 243, 273, 279, 282, 296, 428, 448
SspI	AATATT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	23
TaqI	TCGA	4 cut(s)	44, 54, 60, 122
TasI	AATT	2 cut(s)	46, 124
TatI	WGTACW	2 cut(s)	128, 422
TauI	GCSGC	2 cut(s)	276, 282
TfiI	GAWTC	4 cut(s)	20, 41, 86, 119
TseI	GCWGC	2 cut(s)	276, 328
TspGWI	ACGGA	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	298
XapI	RAATTY	1 cut(s)	46
XmnI	GAANNNNTTC	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.