Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022929

Physical Location & Seq

Genomic Coordinates Forward (+)

77563603 .. 77563806

Gene Structure 204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG546900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGAAGGAGAAGAACGACACCGGCGGCGGCGGGTATGTGAGGGCGGACCAGATAGATCTGAAGAGCTTGGACGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAACAACAAATCCGAATATTAGATATGCTTGGTACAGCGGATCAAGGGATGAGATTTTGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

67

Amino Acids

7.91

Weight (kDa)

8.09

Isoelectric Point (pI)

30.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022929)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016271
rosa_multiflora	Rmu_sc0000694.1_g000006
rosa_samantha	Rh2BG341900 Rh2DG546900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	24, 27, 30, 44, 176
AclWI	GGATC	1 cut(s)	186
AcuI	CTGAAG	2 cut(s)	65, 80
AfaI	GTAC	1 cut(s)	172
AloI	GAACNNNNNNTCC	2 cut(s)	132, 164
AluBI	AGCT	2 cut(s)	66, 79
AluI	AGCT	2 cut(s)	66, 79
Alw26I	GTCTC	1 cut(s)	123
AlwI	GGATC	1 cut(s)	186
ApeKI	GCWGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	88
BcoDI	GTCTC	1 cut(s)	123
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	3 cut(s)	25, 28, 77
BlsI	GCNGC	3 cut(s)	26, 29, 78
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BmsI	GCATC	1 cut(s)	97
BsaI	GGTCTC	1 cut(s)	123
Bse118I	RCCGGY	1 cut(s)	20
BseGI	GGATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	123
Bso31I	GGTCTC	1 cut(s)	123
Bsp143I	GATC	2 cut(s)	55, 178
BspACI	CCGC	5 cut(s)	24, 27, 30, 44, 176
BspCNI	CTCAG	1 cut(s)	84
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	56
BspTNI	GGTCTC	1 cut(s)	123
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	2 cut(s)	55, 178
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	192
BstKTI	GATC	2 cut(s)	58, 181
BstMAI	GTCTC	1 cut(s)	123
BstMBI	GATC	2 cut(s)	55, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstV1I	GCAGC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BtsCI	GGATG	1 cut(s)	192
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	2 cut(s)	66, 79
CviKI_1	RGCY	2 cut(s)	66, 79
CviQI	GTAC	1 cut(s)	171
DdeI	CTNAG	1 cut(s)	92
DpnI	GATC	2 cut(s)	57, 180
DpnII	GATC	2 cut(s)	55, 178
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
EciI	GGCGGA	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	46
Eco57I	CTGAAG	2 cut(s)	65, 80
FaeI	CATG	1 cut(s)	105
FaiI	YATR	4 cut(s)	36, 103, 110, 164
FatI	CATG	1 cut(s)	101
FauI	CCCGC	1 cut(s)	23
Fnu4HI	GCNGC	3 cut(s)	25, 28, 77
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	3 cut(s)	25, 28, 77
GluI	GCNGC	3 cut(s)	25, 28, 77
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	105
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	4 cut(s)	60, 84, 93, 152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	1 cut(s)	92
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	55, 178
LguI	GCTCTTC	1 cut(s)	56
LpnPI	CCDG	5 cut(s)	34, 62, 82, 122, 146
Lsp1109I	GCAGC	1 cut(s)	88
LweI	GCATC	1 cut(s)	97
MalI	GATC	2 cut(s)	57, 180
MboI	GATC	2 cut(s)	55, 178
MboII	GAAGA	3 cut(s)	22, 73, 127
MflI	RGATCY	1 cut(s)	55
MnlI	CCTC	1 cut(s)	33
MspA1I	CMGCKG	1 cut(s)	176
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	85
NdeII	GATC	2 cut(s)	55, 178
NlaIII	CATG	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	26, 29, 78
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	56
SatI	GCNGC	3 cut(s)	25, 28, 77
Sau3AI	GATC	2 cut(s)	55, 178
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	2 cut(s)	68, 81
SfaNI	GCATC	1 cut(s)	97
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	46
SsiI	CCGC	5 cut(s)	24, 27, 30, 44, 176
SspI	AATATT	1 cut(s)	156
TauI	GCSGC	2 cut(s)	27, 30
TseI	GCWGC	1 cut(s)	76
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.