Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022929

Physical Location & Seq

Genomic Coordinates Forward (+)

45674432 .. 45674587

Gene Structure 156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 156 bp

ATGAAGGAGAAGAACGACACCGGCGGCGACGGCGGGTATGTGAGGACGGACCAGATAGATCTGAAGAGCTTGGATGAGCAGCTTCAGAAGCATCTGAGCAGGGCATGGACTATGGAGAAGAACAAGAACAGAGACCAGCAGGAACAACAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

51

Amino Acids

6.01

Weight (kDa)

5.67

Isoelectric Point (pI)

37.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022929)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016271
rosa_multiflora	Rmu_sc0000694.1_g000006
rosa_samantha	Rh2BG341900 Rh2DG546900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	24, 33
AcuI	CTGAAG	2 cut(s)	68, 83
AluBI	AGCT	2 cut(s)	69, 82
AluI	AGCT	2 cut(s)	69, 82
Alw26I	GTCTC	1 cut(s)	126
ApeKI	GCWGC	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	91
BceAI	ACGGC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	126
BglII	AGATCT	1 cut(s)	58
BisI	GCNGC	2 cut(s)	25, 80
BlsI	GCNGC	2 cut(s)	26, 81
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmsI	GCATC	1 cut(s)	100
BsaI	GGTCTC	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	20
BseGI	GGATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	126
Bsp143I	GATC	1 cut(s)	58
BspACI	CCGC	2 cut(s)	24, 33
BspCNI	CTCAG	1 cut(s)	87
BspQI	GCTCTTC	1 cut(s)	59
BspTNI	GGTCTC	1 cut(s)	126
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	59
BstDEI	CTNAG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 88
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	58
BstYI	RGATCY	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	49
CviAII	CATG	1 cut(s)	105
CviJI	RGCY	2 cut(s)	69, 82
CviKI_1	RGCY	2 cut(s)	69, 82
DdeI	CTNAG	1 cut(s)	95
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco31I	GGTCTC	1 cut(s)	126
Eco47I	GGWCC	1 cut(s)	49
Eco57I	CTGAAG	2 cut(s)	68, 83
FaeI	CATG	1 cut(s)	108
FaiI	YATR	3 cut(s)	39, 106, 113
FatI	CATG	1 cut(s)	104
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	2 cut(s)	25, 80
FokI	GGATG	1 cut(s)	86
Fsp4HI	GCNGC	2 cut(s)	25, 80
GluI	GCNGC	2 cut(s)	25, 80
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	108
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	4 cut(s)	63, 87, 96, 155
Hpy99I	CGWCG	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 88
HpyF3I	CTNAG	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	108
Kzo9I	GATC	1 cut(s)	58
LguI	GCTCTTC	1 cut(s)	59
LpnPI	CCDG	5 cut(s)	34, 65, 85, 125, 149
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	100
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MboII	GAAGA	3 cut(s)	22, 76, 130
MflI	RGATCY	1 cut(s)	58
MnlI	CCTC	1 cut(s)	36
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	30, 88
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	108
PciSI	GCTCTTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	26, 81
PspPI	GGNCC	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	59
SatI	GCNGC	2 cut(s)	25, 80
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	49
SetI	ASST	2 cut(s)	71, 84
SfaNI	GCATC	1 cut(s)	100
SgeI	CNNG	9 cut(s)	33, 46, 64, 82, 112, 117, 136, 148, 152
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	49
SsiI	CCGC	2 cut(s)	24, 33
TauI	GCSGC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.