Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000694.1

Orthogroup ID

OG0022929

Physical Location & Seq

Genomic Coordinates Forward (+)

18560 .. 18766

Gene Structure 207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000694.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

atgaaggagaagaacgacaccggcggcggtggtggtggtgggtatgtgagggagtaccagatagatctgaagagcttggaccagcagcttcagaagcatctgagcagggcatggactatggagaagaacaacaacagagaccagcaggaacaacaaattcgaatattagatatgcttggtacagccgtacagcggatcaagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

68

Amino Acids

7.78

Weight (kDa)

9.16

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022929)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000016271
rosa_multiflora	Rmu_sc0000694.1_g000006
rosa_samantha	Rh2BG341900 Rh2DG546900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	24, 27, 193
AclWI	GGATC	1 cut(s)	203
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	74, 89
AfaI	GTAC	3 cut(s)	56, 181, 189
AfiI	CCNNNNNNNGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	75, 88
AluI	AGCT	2 cut(s)	75, 88
Alw26I	GTCTC	1 cut(s)	132
AlwI	GGATC	1 cut(s)	203
ApeKI	GCWGC	1 cut(s)	85
ApoI	RAATTY	1 cut(s)	156
AspS9I	GGNCC	1 cut(s)	79
AsuII	TTCGAA	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	79
BaeI	ACNNNNGTAYC	2 cut(s)	171, 204
BbvI	GCAGC	1 cut(s)	97
BceAI	ACGGC	1 cut(s)	170
BcoDI	GTCTC	1 cut(s)	132
BglII	AGATCT	1 cut(s)	64
BisI	GCNGC	2 cut(s)	25, 86
BlsI	GCNGC	2 cut(s)	26, 87
Bme18I	GGWCC	1 cut(s)	79
BmgT120I	GGNCC	1 cut(s)	79
BmsI	GCATC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse118I	RCCGGY	1 cut(s)	20
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	132
Bso31I	GGTCTC	1 cut(s)	132
Bsp119I	TTCGAA	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	64, 195
BspACI	CCGC	3 cut(s)	24, 27, 193
BspCNI	CTCAG	1 cut(s)	93
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	65
BspT104I	TTCGAA	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	132
BsrFI	RCCGGY	1 cut(s)	20
BssAI	RCCGGY	1 cut(s)	20
BssMI	GATC	2 cut(s)	64, 195
Bst6I	CTCTTC	1 cut(s)	65
BstBI	TTCGAA	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	67, 198
BstMAI	GTCTC	1 cut(s)	132
BstMBI	GATC	2 cut(s)	64, 195
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	79
Csp6I	GTAC	3 cut(s)	55, 180, 188
CviAII	CATG	1 cut(s)	111
CviJI	RGCY	3 cut(s)	75, 88, 185
CviKI_1	RGCY	3 cut(s)	75, 88, 185
CviQI	GTAC	3 cut(s)	55, 180, 188
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	66, 197
DpnII	GATC	2 cut(s)	64, 195
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	74, 89
FaeI	CATG	1 cut(s)	114
FaiI	YATR	4 cut(s)	45, 112, 119, 173
FatI	CATG	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	25, 86
Fsp4HI	GCNGC	2 cut(s)	25, 86
GluI	GCNGC	2 cut(s)	25, 86
HapII	CCGG	1 cut(s)	21
Hin1II	CATG	1 cut(s)	114
HpaII	CCGG	1 cut(s)	21
Hpy188I	TCNGA	3 cut(s)	69, 93, 102
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpyF3I	CTNAG	1 cut(s)	101
Hsp92II	CATG	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	64, 195
LguI	GCTCTTC	1 cut(s)	65
LpnPI	CCDG	6 cut(s)	34, 71, 91, 95, 131, 155
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	66, 197
MboI	GATC	2 cut(s)	64, 195
MboII	GAAGA	3 cut(s)	22, 82, 136
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	1 cut(s)	156
MnlI	CCTC	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	193
MspI	CCGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	2 cut(s)	64, 195
NlaIII	CATG	1 cut(s)	114
NspV	TTCGAA	1 cut(s)	160
PciSI	GCTCTTC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	26, 87
PspPI	GGNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	3 cut(s)	56, 181, 189
RsaNI	GTAC	3 cut(s)	55, 180, 188
SapI	GCTCTTC	1 cut(s)	65
SatI	GCNGC	2 cut(s)	25, 86
Sau3AI	GATC	2 cut(s)	64, 195
Sau96I	GGNCC	1 cut(s)	79
SetI	ASST	2 cut(s)	77, 90
SfaNI	GCATC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	160
SgeI	CNNG	9 cut(s)	33, 70, 88, 94, 118, 123, 154, 158, 188
SgrAI	CRCCGGYG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	79
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	3 cut(s)	24, 27, 193
SspI	AATATT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	156
TauI	GCSGC	1 cut(s)	27
TseI	GCWGC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.