RLG00000016567

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0021004
Physical Location & Seq
Forward (+)
7706923 .. 7710063
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016567

Sequence Viewer

Length: 681 bp
ATGCAAGCCCACAAAACTTCTAATCTGTCGTATAGAACTGCGATACTTTACCTTCGATCGTCGTACCCTTCAAACATTCACGTTTGGGCCACAATTACTTATTGGTTCGTATATGATCGAGCTCTGGTGAAGCCTACAAACCTTGGCCAGAATGGATCTGCAGCCATAAACCAAATTGGGTCCCACCCTGTTCTCTTGACAACGTCAGACAACGAGTTCATGATGGTATCGGAAAAGAACCCCATCGAGAATGGGAGAATATTATGGAGAAGGCAAGCCAAAGACGGTAGACTCTCAACCCTAGCAGAACAGATGTTGCCGGATGTCGTGGAGGCCAGGATGCACTTGCCGGAGGGTGGTCTTGTCTTGGTCGACGTGACCATTGACGTTGTTCATGCAATGGCTTGGTTTTTGTCGTCGTCGTCGATTGTCAAAAGTTTTGTGTTTACGTTGGACCCCTCCACCGGATTGTCGAAGGAATTGCCCGGCCCAGGCAACAGCGACGGCTACGGCTACGGCGGCATTTGTGTTTATGCTATGGGGAATTCGGCAACTGTTTTGAACGAGACTCTTCTTTGGCTAGACGAAAGGGATGCGATAGTGGCTTTTGATTTGGAGAAGGAAGAGTTAAGGAAAATGAGGATGCCTGTGTTTATCGAGGTTCTCATGGAAGGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.22

Weight (kDa)

5.27

Isoelectric Point (pI)

39.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09021
rosa_laevigata RLG00000016567
rosa_multiflora Rmu_sc0010847.1_g000002 Rmu_ssc0000183.1_g000047
rosa_roxburghii Rroxscaffold_2G00146340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 289, 372
AciI CCGC 1 cut(s) 519
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 1 cut(s) 145
AcsI RAATTY 1 cut(s) 544
AfaI GTAC 1 cut(s) 65
AfiI CCNNNNNNNGG 3 cut(s) 356, 464, 491
AgsI TTSAA 2 cut(s) 72, 562
AjiI CACGTC 1 cut(s) 376
AjnI CCWGG 2 cut(s) 335, 490
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 560
AlwI GGATC 1 cut(s) 163
AoxI GGCC 4 cut(s) 87, 145, 333, 487
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 544
AspS9I GGNCC 4 cut(s) 87, 180, 454, 488
AsuC2I CCSGG 1 cut(s) 486
AsuHPI GGTGA 1 cut(s) 139
AvaII GGWCC 2 cut(s) 180, 454
BalI TGGCCA 1 cut(s) 147
BanII GRGCYC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 124
BbvI GCAGC 1 cut(s) 173
BccI CCATC 2 cut(s) 217, 251
BceAI ACGGC 3 cut(s) 520, 526, 532
BcgI CGANNNNNNTGC 4 cut(s) 463, 497, 575, 609
BciT130I CCWGG 2 cut(s) 337, 492
BcnI CCSGG 1 cut(s) 486
BcoDI GTCTC 1 cut(s) 560
BfaI CTAG 2 cut(s) 302, 581
BfmI CTRYAG 1 cut(s) 159
BisI GCNGC 2 cut(s) 162, 520
BlsI GCNGC 2 cut(s) 163, 521
Bme1390I CCNGG 3 cut(s) 337, 486, 492
Bme18I GGWCC 2 cut(s) 180, 454
BmgBI CACGTC 1 cut(s) 376
BmgT120I GGNCC 4 cut(s) 87, 180, 454, 488
BmiI GGNNCC 3 cut(s) 181, 182, 456
BmrFI CCNGG 3 cut(s) 337, 486, 492
BmsI GCATC 3 cut(s) 330, 583, 633
BpuMI CCSGG 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 142, 490
BsaWI WCCGGW 1 cut(s) 464
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 464, 491
Bse3DI GCAATG 1 cut(s) 405
BseBI CCWGG 2 cut(s) 337, 492
BseDI CCNNGG 2 cut(s) 142, 490
BseGI GGATG 4 cut(s) 328, 345, 598, 648
BseLI CCNNNNNNNGG 3 cut(s) 356, 464, 491
BseMI GCAATG 1 cut(s) 405
BseXI GCAGC 1 cut(s) 173
Bsh1285I CGRYCG 1 cut(s) 59
BshFI GGCC 4 cut(s) 89, 147, 335, 489
BsiEI CGRYCG 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 4 cut(s) 320, 350, 465, 486
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 3 cut(s) 356, 464, 491
BsmAI GTCTC 1 cut(s) 560
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 4 cut(s) 89, 147, 335, 489
Bsp1286I GDGCHC 1 cut(s) 124
Bsp143I GATC 3 cut(s) 56, 115, 155
BspACI CCGC 1 cut(s) 519
BspANI GGCC 4 cut(s) 89, 147, 335, 489
BspHI TCATGA 1 cut(s) 219
BspLI GGNNCC 3 cut(s) 181, 182, 456
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 405
BssECI CCNNGG 2 cut(s) 142, 490
BssMI GATC 3 cut(s) 56, 115, 155
BssT1I CCWWGG 1 cut(s) 142
Bst2UI CCWGG 2 cut(s) 337, 492
Bst4CI ACNGT 2 cut(s) 287, 556
Bst6I CTCTTC 2 cut(s) 576, 618
BstC8I GCNNGC 2 cut(s) 6, 276
BstF5I GGATG 4 cut(s) 328, 345, 598, 648
BstKTI GATC 3 cut(s) 59, 118, 158
BstMAI GTCTC 1 cut(s) 560
BstMBI GATC 3 cut(s) 56, 115, 155
BstMCI CGRYCG 1 cut(s) 59
BstMWI GCNNNNNNNGC 2 cut(s) 519, 602
BstNI CCWGG 2 cut(s) 337, 492
BstSCI CCNGG 3 cut(s) 335, 484, 490
BstSFI CTRYAG 1 cut(s) 159
BstV1I GCAGC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 4 cut(s) 89, 147, 335, 489
BtrI CACGTC 1 cut(s) 376
BtsCI GGATG 4 cut(s) 328, 345, 598, 648
Cac8I GCNNGC 2 cut(s) 6, 276
CciI TCATGA 1 cut(s) 219
Cfr13I GGNCC 4 cut(s) 87, 180, 454, 488
Csp6I GTAC 1 cut(s) 64
CviAII CATG 3 cut(s) 220, 395, 667
CviQI GTAC 1 cut(s) 64
DpnI GATC 3 cut(s) 58, 117, 157
DpnII GATC 3 cut(s) 56, 115, 155
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 2 cut(s) 576, 618
EarI CTCTTC 2 cut(s) 576, 618
Ecl136II GAGCTC 1 cut(s) 122
Eco130I CCWWGG 1 cut(s) 142
Eco24I GRGCYC 1 cut(s) 124
Eco47I GGWCC 2 cut(s) 180, 454
Eco53kI GAGCTC 1 cut(s) 122
EcoICRI GAGCTC 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 180
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 2 cut(s) 335, 490
EcoT14I CCWWGG 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 142
FaeI CATG 3 cut(s) 223, 398, 670
FaqI GGGAC 1 cut(s) 166
FatI CATG 3 cut(s) 219, 394, 666
FblI GTMKAC 2 cut(s) 289, 372
Fnu4HI GCNGC 2 cut(s) 162, 520
FokI GGATG 4 cut(s) 335, 352, 605, 655
FriOI GRGCYC 1 cut(s) 124
Fsp4HI GCNGC 2 cut(s) 162, 520
FspBI CTAG 2 cut(s) 302, 581
GluI GCNGC 2 cut(s) 162, 520
HaeIII GGCC 4 cut(s) 89, 147, 335, 489
HapII CCGG 4 cut(s) 320, 350, 465, 486
Hin1II CATG 3 cut(s) 223, 398, 670
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 291, 568
HpaII CCGG 4 cut(s) 320, 350, 465, 486
HphI GGTGA 1 cut(s) 139
Hpy166II GTNNAC 3 cut(s) 290, 373, 447
Hpy188I TCNGA 2 cut(s) 208, 232
Hpy188III TCNNGA 3 cut(s) 196, 220, 247
Hpy8I GTNNAC 3 cut(s) 290, 373, 447
Hpy99I CGWCG 6 cut(s) 64, 377, 421, 424, 427, 506
HpyAV CCTTC 6 cut(s) 62, 78, 264, 469, 613, 665
HpyCH4III ACNGT 2 cut(s) 287, 556
HpyCH4IV ACGT 5 cut(s) 81, 203, 375, 387, 449
HpyCH4V TGCA 4 cut(s) 4, 161, 343, 398
HpyF10VI GCNNNNNNNGC 2 cut(s) 519, 602
HpySE526I ACGT 5 cut(s) 81, 203, 375, 387, 449
Hsp92II CATG 3 cut(s) 223, 398, 670
KflI GGGWCCC 1 cut(s) 180
Kzo9I GATC 3 cut(s) 56, 115, 155
Lsp1109I GCAGC 1 cut(s) 173
LweI GCATC 3 cut(s) 330, 583, 633
MaeI CTAG 2 cut(s) 302, 581
MaeII ACGT 5 cut(s) 81, 203, 375, 387, 449
MaeIII GTNAC 1 cut(s) 376
MalI GATC 3 cut(s) 58, 117, 157
MboI GATC 3 cut(s) 56, 115, 155
MboII GAAGA 2 cut(s) 563, 635
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 124
MlsI TGGCCA 1 cut(s) 147
MluCI AATT 4 cut(s) 93, 174, 479, 544
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 2 cut(s) 285, 562
MmeI TCCRAC 1 cut(s) 432
MnlI CCTC 5 cut(s) 325, 346, 469, 633, 652
Mox20I TGGCCA 1 cut(s) 147
MscI TGGCCA 1 cut(s) 147
MseI TTAA 1 cut(s) 629
Msp20I TGGCCA 1 cut(s) 147
MspI CCGG 4 cut(s) 320, 350, 465, 486
MspR9I CCNGG 3 cut(s) 337, 486, 492
MvaI CCWGG 2 cut(s) 337, 492
MwoI GCNNNNNNNGC 2 cut(s) 519, 602
NciI CCSGG 1 cut(s) 486
NdeII GATC 3 cut(s) 56, 115, 155
NlaIII CATG 3 cut(s) 223, 398, 670
NlaIV GGNNCC 3 cut(s) 181, 182, 456
NmuCI GTSAC 1 cut(s) 376
PagI TCATGA 1 cut(s) 219
PcsI WCGNNNNNNNCGW 1 cut(s) 422
PflFI GACNNNGTC 1 cut(s) 202
PkrI GCNGC 2 cut(s) 163, 521
Ple19I CGATCG 1 cut(s) 59
PleI GAGTC 2 cut(s) 285, 562
PpsI GAGTC 2 cut(s) 285, 562
PpuMI RGGWCCY 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 180
Psp6I CCWGG 2 cut(s) 335, 490
PspGI CCWGG 2 cut(s) 335, 490
PspN4I GGNNCC 3 cut(s) 181, 182, 456
PspPI GGNCC 4 cut(s) 87, 180, 454, 488
PspPPI RGGWCCY 1 cut(s) 180
PstI CTGCAG 1 cut(s) 163
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 202
PvuI CGATCG 1 cut(s) 59
RsaI GTAC 1 cut(s) 65
RsaNI GTAC 1 cut(s) 64
SacI GAGCTC 1 cut(s) 124
SalI GTCGAC 1 cut(s) 371
SaqAI TTAA 1 cut(s) 629
SatI GCNGC 2 cut(s) 162, 520
Sau3AI GATC 3 cut(s) 56, 115, 155
Sau96I GGNCC 4 cut(s) 87, 180, 454, 488
SchI GAGTC 2 cut(s) 285, 562
ScrFI CCNGG 3 cut(s) 337, 486, 492
SduI GDGCHC 1 cut(s) 124
SetI ASST 9 cut(s) 54, 84, 124, 144, 206, 378, 390, 452, 663
SfaNI GCATC 3 cut(s) 330, 583, 633
SfcI CTRYAG 1 cut(s) 159
SinI GGWCC 2 cut(s) 180, 454
Sse9I AATT 4 cut(s) 93, 174, 479, 544
SsiI CCGC 1 cut(s) 519
SspI AATATT 1 cut(s) 261
SspMI CTAG 2 cut(s) 302, 581
SstI GAGCTC 1 cut(s) 124
StyD4I CCNGG 3 cut(s) 335, 484, 490
StyI CCWWGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 287, 556
TaiI ACGT 5 cut(s) 84, 206, 378, 390, 452
TaqI TCGA 7 cut(s) 55, 118, 246, 372, 425, 473, 657
TasI AATT 4 cut(s) 93, 174, 479, 544
TauI GCSGC 1 cut(s) 522
Tru1I TTAA 1 cut(s) 629
Tru9I TTAA 1 cut(s) 629
TseFI GTSAC 1 cut(s) 376
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 2 cut(s) 208, 383
Tth111I GACNNNGTC 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 180, 454
XapI RAATTY 1 cut(s) 544
XmiI GTMKAC 2 cut(s) 289, 372
XspI CTAG 2 cut(s) 302, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.