Rmu_sc0010847.1_g000002

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010847.1
OG0021004
Physical Location & Seq
Reverse (-)
3069 .. 5560
2492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010847.1_g000002.1.cds

Sequence Viewer

Length: 789 bp
atggcagacacaaatctactcgaagatgttatcttcaacatcctatccaggctccccataaaatccctaatccgattcaccttcgttttgaaacgctggcgtctcgtcatattgtccaacccaaaattcgccgaaacccaaattagggtttctcaccagcagaacatcgaccgtcacagactccttgtctccaccaccatggtgggccctcctcgaatccctagacttgtacgccccatcgttcggagacaaatcctcggtacatttaccggtccggatgggttttattcggttctgcaacttagtgaaaccgcaaccgaaaccgatgaattgcctggcccaggttttccgatgaccagccagcaagcccattacggggttggctacttgtcggccgccgatgattacaaaaaaaggattgaatcccccggcaacatcgatggctacagcagcatttgtgtttatgctatggggagttcggcaactgttttgaacgagactcttcattggctagacgaaaaggatgcgatagtggcttttgatatggagaaggaagagttctcatggaaggggggtaattttgtttgtattgatttctgggttatgagagaatatggggtgccggattcgtggattcagctctttaacttgaaattggagtattccgagcagatgacgagcctttcgcatgtcagacaattcttgtttatggagaatagtacagttgcttcggtccaagtgacagacataggaccgtacatggaacgtacgtgggttgataaggattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

262

Amino Acids

30.03

Weight (kDa)

5.45

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021004)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g09021
rosa_laevigata RLG00000016567
rosa_multiflora Rmu_sc0010847.1_g000002 Rmu_ssc0000183.1_g000047
rosa_roxburghii Rroxscaffold_2G00146340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 619
AccIII TCCGGA 1 cut(s) 274
AciI CCGC 2 cut(s) 312, 396
AcoI YGGCCR 1 cut(s) 393
AcsI RAATTY 1 cut(s) 125
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 5 cut(s) 231, 262, 721, 758, 769
AfiI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 341, 375, 376
AgeI ACCGGT 1 cut(s) 269
AgsI TTSAA 5 cut(s) 37, 91, 422, 493, 652
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 3 cut(s) 47, 334, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AleI CACNNNNGTG 1 cut(s) 200
AluBI AGCT 1 cut(s) 640
AluI AGCT 1 cut(s) 640
Alw26I GTCTC 4 cut(s) 107, 193, 241, 491
Aor13HI TCCGGA 1 cut(s) 274
AoxI GGCC 3 cut(s) 205, 337, 393
ApaI GGGCCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 450
ApoI RAATTY 1 cut(s) 125
ArsI GACNNNNNNTTYG 2 cut(s) 667, 699
AsiGI ACCGGT 1 cut(s) 269
AspS9I GGNCC 6 cut(s) 205, 206, 272, 338, 733, 752
AsuC2I CCSGG 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 70, 146
AvaII GGWCC 3 cut(s) 272, 733, 752
BaeGI GKGCMC 1 cut(s) 209
BanI GGYRCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 712, 744
BbvI GCAGC 1 cut(s) 462
BccI CCATC 3 cut(s) 245, 272, 434
BcgI CGANNNNNNTGC 2 cut(s) 506, 540
BciT130I CCWGG 3 cut(s) 49, 336, 342
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 4 cut(s) 107, 193, 241, 491
BfaI CTAG 2 cut(s) 222, 512
BfmI CTRYAG 1 cut(s) 445
BisI GCNGC 2 cut(s) 396, 451
BlsI GCNGC 2 cut(s) 397, 452
Bme1390I CCNGG 4 cut(s) 49, 336, 342, 429
Bme18I GGWCC 3 cut(s) 272, 733, 752
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 6 cut(s) 205, 206, 272, 338, 733, 752
BmiI GGNNCC 3 cut(s) 53, 207, 621
BmrFI CCNGG 4 cut(s) 49, 336, 342, 429
BmsI GCATC 1 cut(s) 514
BpuMI CCSGG 1 cut(s) 429
Bsa29I ATCGAT 1 cut(s) 438
BsaAI YACGTR 1 cut(s) 771
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 4 cut(s) 198, 256, 340, 427
BsaWI WCCGGW 2 cut(s) 269, 274
Bsc4I CCNNNNNNNGG 6 cut(s) 144, 145, 243, 341, 375, 376
Bse118I RCCGGY 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 274
BseBI CCWGG 3 cut(s) 49, 336, 342
BseCI ATCGAT 1 cut(s) 438
BseDI CCNNGG 4 cut(s) 198, 256, 340, 427
BseGI GGATG 3 cut(s) 39, 283, 529
BseLI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 341, 375, 376
BseRI GAGGAG 1 cut(s) 201
BseSI GKGCMC 1 cut(s) 209
BseX3I CGGCCG 1 cut(s) 393
BseXI GCAGC 1 cut(s) 462
Bsh1285I CGRYCG 2 cut(s) 172, 396
BshFI GGCC 3 cut(s) 207, 339, 395
BshNI GGYRCC 1 cut(s) 619
BshTI ACCGGT 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 438
BsiEI CGRYCG 2 cut(s) 172, 396
BsiSI CCGG 4 cut(s) 270, 275, 429, 623
BsiWI CGTACG 1 cut(s) 767
BslI CCNNNNNNNGG 6 cut(s) 144, 145, 243, 341, 375, 376
BsmAI GTCTC 4 cut(s) 107, 193, 241, 491
BsmBI CGTCTC 1 cut(s) 107
BsnI GGCC 3 cut(s) 207, 339, 395
Bsp120I GGGCCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 209
Bsp13I TCCGGA 1 cut(s) 274
Bsp19I CCATGG 1 cut(s) 198
BspACI CCGC 2 cut(s) 312, 396
BspANI GGCC 3 cut(s) 207, 339, 395
BspDI ATCGAT 1 cut(s) 438
BspEI TCCGGA 1 cut(s) 274
BspLI GGNNCC 3 cut(s) 53, 207, 621
BspT107I GGYRCC 1 cut(s) 619
BsrFI RCCGGY 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 198, 256, 340, 427
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 198
Bst2UI CCWGG 3 cut(s) 49, 336, 342
Bst4CI ACNGT 4 cut(s) 173, 487, 724, 756
Bst6I CTCTTC 2 cut(s) 507, 549
BstACI GRCGYC 1 cut(s) 100
BstBAI YACGTR 1 cut(s) 771
BstC8I GCNNGC 3 cut(s) 98, 362, 366
BstDEI CTNAG 1 cut(s) 302
BstDSI CCRYGG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 339
BstF5I GGATG 3 cut(s) 39, 283, 529
BstMAI GTCTC 4 cut(s) 107, 193, 241, 491
BstMCI CGRYCG 2 cut(s) 172, 396
BstMWI GCNNNNNNNGC 2 cut(s) 450, 533
BstNI CCWGG 3 cut(s) 49, 336, 342
BstNSI RCATGY 1 cut(s) 692
BstSCI CCNGG 4 cut(s) 47, 334, 340, 427
BstSFI CTRYAG 1 cut(s) 445
BstSLI GKGCMC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 462
BstXI CCANNNNNNTGG 2 cut(s) 199, 202
BstZI CGGCCG 1 cut(s) 393
Bsu15I ATCGAT 1 cut(s) 438
BsuRI GGCC 3 cut(s) 207, 339, 395
BsuTUI ATCGAT 1 cut(s) 438
BtgI CCRYGG 1 cut(s) 198
BtsCI GGATG 3 cut(s) 39, 283, 529
Cac8I GCNNGC 3 cut(s) 98, 362, 366
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 6 cut(s) 205, 206, 272, 338, 733, 752
ClaI ATCGAT 1 cut(s) 438
CpoI CGGWCCG 1 cut(s) 272
CseI GACGC 1 cut(s) 89
Csp6I GTAC 5 cut(s) 230, 261, 720, 757, 768
CspAI ACCGGT 1 cut(s) 269
CspI CGGWCCG 1 cut(s) 272
CviAII CATG 4 cut(s) 199, 564, 689, 760
CviQI GTAC 5 cut(s) 230, 261, 720, 757, 768
DdeI CTNAG 1 cut(s) 302
DriI GACNNNNNGTC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 393
EagI CGGCCG 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 507, 549
Eam1105I GACNNNNNGTC 1 cut(s) 185
EarI CTCTTC 2 cut(s) 507, 549
EclXI CGGCCG 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 209
Eco47I GGWCC 3 cut(s) 272, 733, 752
Eco52I CGGCCG 1 cut(s) 393
EcoNI CCTNNNNNAGG 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 206
EcoRII CCWGG 3 cut(s) 47, 334, 340
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 209
ErhI CCWWGG 1 cut(s) 198
Esp3I CGTCTC 1 cut(s) 107
FaeI CATG 4 cut(s) 202, 567, 692, 763
FatI CATG 4 cut(s) 198, 563, 688, 759
Fnu4HI GCNGC 2 cut(s) 396, 451
FokI GGATG 3 cut(s) 26, 290, 536
FriOI GRGCYC 1 cut(s) 209
Fsp4HI GCNGC 2 cut(s) 396, 451
FspBI CTAG 2 cut(s) 222, 512
GluI GCNGC 2 cut(s) 396, 451
HaeIII GGCC 3 cut(s) 207, 339, 395
HapII CCGG 4 cut(s) 270, 275, 429, 623
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 4 cut(s) 202, 567, 692, 763
HinfI GANTC 7 cut(s) 75, 180, 216, 422, 499, 626, 634
HpaII CCGG 4 cut(s) 270, 275, 429, 623
HphI GGTGA 2 cut(s) 70, 146
Hpy188I TCNGA 5 cut(s) 74, 246, 351, 667, 695
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 91, 544, 562
HpyCH4III ACNGT 4 cut(s) 173, 487, 724, 756
HpyCH4IV ACGT 2 cut(s) 766, 770
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 450, 533
HpyF3I CTNAG 1 cut(s) 302
HpySE526I ACGT 2 cut(s) 766, 770
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 4 cut(s) 202, 567, 692, 763
Kpn2I TCCGGA 1 cut(s) 274
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 462
LweI GCATC 1 cut(s) 514
MaeI CTAG 2 cut(s) 222, 512
MaeII ACGT 2 cut(s) 766, 770
MaeIII GTNAC 2 cut(s) 173, 739
MboII GAAGA 4 cut(s) 25, 35, 494, 566
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 6 cut(s) 125, 141, 329, 577, 653, 698
MlyI GAGTC 2 cut(s) 174, 493
MmeI TCCRAC 1 cut(s) 141
MnlI CCTC 3 cut(s) 219, 222, 266
MroI TCCGGA 1 cut(s) 274
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 2 cut(s) 197, 200
MspI CCGG 4 cut(s) 270, 275, 429, 623
MspR9I CCNGG 4 cut(s) 49, 336, 342, 429
MvaI CCWGG 3 cut(s) 49, 336, 342
MwoI GCNNNNNNNGC 2 cut(s) 450, 533
NciI CCSGG 1 cut(s) 429
NcoI CCATGG 1 cut(s) 198
NlaIII CATG 4 cut(s) 202, 567, 692, 763
NlaIV GGNNCC 3 cut(s) 53, 207, 621
NmuCI GTSAC 2 cut(s) 173, 739
NspI RCATGY 1 cut(s) 692
OliI CACNNNNGTG 1 cut(s) 200
PfeI GAWTC 5 cut(s) 75, 216, 422, 626, 634
Pfl23II CGTACG 1 cut(s) 767
PinAI ACCGGT 1 cut(s) 269
PkrI GCNGC 2 cut(s) 397, 452
PleI GAGTC 2 cut(s) 174, 493
PpsI GAGTC 2 cut(s) 174, 493
Ppu21I YACGTR 1 cut(s) 771
Psp6I CCWGG 3 cut(s) 47, 334, 340
PspGI CCWGG 3 cut(s) 47, 334, 340
PspLI CGTACG 1 cut(s) 767
PspN4I GGNNCC 3 cut(s) 53, 207, 621
PspOMI GGGCCC 1 cut(s) 205
PspPI GGNCC 6 cut(s) 205, 206, 272, 338, 733, 752
RsaI GTAC 5 cut(s) 231, 262, 721, 758, 769
RsaNI GTAC 5 cut(s) 230, 261, 720, 757, 768
RseI CAYNNNNRTG 2 cut(s) 197, 200
Rsr2I CGGWCCG 1 cut(s) 272
RsrII CGGWCCG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 2 cut(s) 396, 451
Sau96I GGNCC 6 cut(s) 205, 206, 272, 338, 733, 752
SchI GAGTC 2 cut(s) 174, 493
ScrFI CCNGG 4 cut(s) 49, 336, 342, 429
SduI GDGCHC 1 cut(s) 209
SetI ASST 5 cut(s) 83, 346, 642, 769, 773
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 445
SinI GGWCC 3 cut(s) 272, 733, 752
SmiMI CAYNNNNRTG 2 cut(s) 197, 200
Sse9I AATT 6 cut(s) 125, 141, 329, 577, 653, 698
SsiI CCGC 2 cut(s) 312, 396
SspMI CTAG 2 cut(s) 222, 512
StyD4I CCNGG 4 cut(s) 47, 334, 340, 427
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 4 cut(s) 173, 487, 724, 756
TaiI ACGT 2 cut(s) 769, 773
TaqI TCGA 4 cut(s) 21, 168, 214, 438
TaqII GACCGA 1 cut(s) 721
TasI AATT 6 cut(s) 125, 141, 329, 577, 653, 698
TatI WGTACW 1 cut(s) 719
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 5 cut(s) 75, 216, 422, 626, 634
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TseFI GTSAC 2 cut(s) 173, 739
TseI GCWGC 1 cut(s) 450
Tsp45I GTSAC 2 cut(s) 173, 739
TspDTI ATGAA 2 cut(s) 342, 494
VpaK11BI GGWCC 3 cut(s) 272, 733, 752
XagI CCTNNNNNAGG 1 cut(s) 339
XapI RAATTY 1 cut(s) 125
XceI RCATGY 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 2 cut(s) 199, 377
XspI CTAG 2 cut(s) 222, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.