RLG00000017487

UPF0481 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0019385
Physical Location & Seq
Forward (+)
17464207 .. 17465245
1039 bp
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UTR
Exon/CDS
Intron
RLM00000017487

Sequence Viewer

Length: 735 bp
ATGCAAACTTGGAGTGAAAATAGGCAGGAAGATGAACTGTTGGCATCCTTGATCGGAGAGAAACTTAGCCAGAAATTAGAAGCACAGAACAAGACTGCCGCAACTGTTATGATGAAAAATTCCATCATGCACTTGTCTAGTGACAAGTTTGTGGAAATAATGGTGGTTCATGGTTGCTTTGTTATTGAACTGTTCCGCAAGTTTTCAGGAGAGCTTCCTTGGAGAGTTTTTAACTGTTTGCTTCACCTCACCTCCGAAGCTGATAAGTTTCCTCTTCCTAAGCTTACTCTAAAGTGCTTTGAGGGGTACACAATGGGGACATATCCACAGGCTAATGCAGCATTAGAAAAAAAACATTTGCTGGACTTTTTAGGTAATTGTTTACAAGGATCTTCTGCTGAATCTGCAGAGTTTGAGAACTATAGCCAGAGGCGCCCCTCGATTCCCTCTGTGACAGAGCTTGATTATTTTGGTATTCGGTTTAAGCTTGGAGGCAGTAATGACGTGTGCAATGGAACATTCAGGAATGGATTTCTGACGATTCCACCATTACCAGTTCAAGAGAATGGAGAATCTCTCTTTAGAAACCTCAGAGCTTATGCCCAGCTGGAACCAAGTAATAAGAGTAAATTGATATCTTATTTTGTGTTGTTAGATGACCTTATTAAGTGCGAAAAAGATCTGGCGTTACTTGATGAACAGGAAATTATCGCAAACTTCGTGCATGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

245

Amino Acids

27.73

Weight (kDa)

5.47

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 72 - 241 2.2e-28 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019385)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0106301
rosa_laevigata RLG00000017487
rosa_roxburghii Rroxscaffold_2G00137290
rosa_rugosa Rorug02G0134600
rosa_samantha Rh2AG185600 Rh2BG195800 Rh2CG190600 Rh2DG191700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 432
AciI CCGC 2 cut(s) 99, 196
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 433
AfaI GTAC 1 cut(s) 308
AflIII ACRYGT 1 cut(s) 504
AgsI TTSAA 2 cut(s) 188, 560
AjiI CACGTC 1 cut(s) 505
AluBI AGCT 7 cut(s) 214, 260, 283, 460, 487, 596, 607
AluI AGCT 7 cut(s) 214, 260, 283, 460, 487, 596, 607
AlwI GGATC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 118
AspLEI GCGC 1 cut(s) 435
AsuHPI GGTGA 2 cut(s) 236, 241
BanI GGYRCC 1 cut(s) 432
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 131
BfaI CTAG 1 cut(s) 138
BfmI CTRYAG 2 cut(s) 405, 421
BfoI RGCGCY 1 cut(s) 436
BglII AGATCT 1 cut(s) 679
BisI GCNGC 2 cut(s) 99, 339
BlsI GCNGC 2 cut(s) 100, 340
BmgBI CACGTC 1 cut(s) 505
BmiI GGNNCC 2 cut(s) 434, 612
BmsI GCATC 1 cut(s) 53
BplI GAGNNNNNCTC 2 cut(s) 561, 593
Bpu10I CCTNAGC 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 730
BsaHI GRCGYC 1 cut(s) 433
BsaJI CCNNGG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 236, 266
Bse1I ACTGG 1 cut(s) 554
Bse3DI GCAATG 1 cut(s) 517
BseCI ATCGAT 1 cut(s) 730
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 44
BseMI GCAATG 1 cut(s) 517
BseMII CTCAG 1 cut(s) 604
BseNI ACTGG 1 cut(s) 554
BseXI GCAGC 1 cut(s) 350
BseYI CCCAGC 1 cut(s) 603
BshNI GGYRCC 1 cut(s) 432
BshVI ATCGAT 1 cut(s) 730
BslFI GGGAC 1 cut(s) 331
BsmFI GGGAC 1 cut(s) 331
Bsp143I GATC 4 cut(s) 51, 389, 679, 727
BspACI CCGC 2 cut(s) 99, 196
BspCNI CTCAG 1 cut(s) 603
BspDI ATCGAT 1 cut(s) 730
BspLI GGNNCC 2 cut(s) 434, 612
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 432
BsrDI GCAATG 1 cut(s) 517
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 4 cut(s) 51, 389, 679, 727
BssNI GRCGYC 1 cut(s) 433
BssT1I CCWWGG 1 cut(s) 218
Bst4CI ACNGT 4 cut(s) 39, 106, 192, 236
Bst6I CTCTTC 1 cut(s) 279
BstACI GRCGYC 1 cut(s) 433
BstDEI CTNAG 3 cut(s) 65, 279, 590
BstF5I GGATG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 436
BstHHI GCGC 1 cut(s) 435
BstKTI GATC 4 cut(s) 54, 392, 682, 730
BstMBI GATC 4 cut(s) 51, 389, 679, 727
BstMWI GCNNNNNNNGC 3 cut(s) 338, 404, 432
BstSFI CTRYAG 2 cut(s) 405, 421
BstV1I GCAGC 1 cut(s) 350
BstX2I RGATCY 2 cut(s) 389, 679
BstYI RGATCY 2 cut(s) 389, 679
Bsu15I ATCGAT 1 cut(s) 730
BsuTUI ATCGAT 1 cut(s) 730
BtrI CACGTC 1 cut(s) 505
BtsCI GGATG 1 cut(s) 44
CfoI GCGC 1 cut(s) 435
ClaI ATCGAT 1 cut(s) 730
Csp6I GTAC 1 cut(s) 307
CviAII CATG 3 cut(s) 127, 170, 725
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 65, 279, 590
DinI GGCGCC 1 cut(s) 434
DpnI GATC 4 cut(s) 53, 391, 681, 729
DpnII GATC 4 cut(s) 51, 389, 679, 727
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco130I CCWWGG 1 cut(s) 218
Eco32I GATATC 1 cut(s) 636
EcoRV GATATC 1 cut(s) 636
EcoT14I CCWWGG 1 cut(s) 218
EgeI GGCGCC 1 cut(s) 434
EheI GGCGCC 1 cut(s) 434
ErhI CCWWGG 1 cut(s) 218
FaeI CATG 3 cut(s) 130, 173, 728
FaiI YATR 7 cut(s) 110, 128, 171, 322, 423, 600, 726
FaqI GGGAC 1 cut(s) 331
FatI CATG 3 cut(s) 126, 169, 724
Fnu4HI GCNGC 2 cut(s) 99, 339
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 2 cut(s) 99, 339
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 434
GluI GCNGC 2 cut(s) 99, 339
GsaI CCCAGC 1 cut(s) 607
HaeII RGCGCY 1 cut(s) 436
HhaI GCGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 433
Hin1II CATG 3 cut(s) 130, 173, 728
Hin6I GCGC 1 cut(s) 433
HinP1I GCGC 1 cut(s) 433
HindIII AAGCTT 2 cut(s) 281, 485
HinfI GANTC 4 cut(s) 401, 442, 541, 572
HphI GGTGA 2 cut(s) 236, 241
Hpy166II GTNNAC 2 cut(s) 309, 383
Hpy188I TCNGA 4 cut(s) 56, 256, 537, 593
Hpy188III TCNNGA 3 cut(s) 207, 523, 560
Hpy8I GTNNAC 2 cut(s) 309, 383
HpyCH4III ACNGT 4 cut(s) 39, 106, 192, 236
HpyCH4IV ACGT 1 cut(s) 504
HpyCH4V TGCA 6 cut(s) 4, 130, 338, 407, 510, 724
HpyF10VI GCNNNNNNNGC 3 cut(s) 338, 404, 432
HpyF3I CTNAG 3 cut(s) 65, 279, 590
HpySE526I ACGT 1 cut(s) 504
Hsp92I GRCGYC 1 cut(s) 433
Hsp92II CATG 3 cut(s) 130, 173, 728
HspAI GCGC 1 cut(s) 433
KasI GGCGCC 1 cut(s) 432
Kzo9I GATC 4 cut(s) 51, 389, 679, 727
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 53
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 504
MaeIII GTNAC 3 cut(s) 140, 451, 687
MalI GATC 4 cut(s) 53, 391, 681, 729
MboI GATC 4 cut(s) 51, 389, 679, 727
MboII GAAGA 3 cut(s) 41, 266, 384
MflI RGATCY 2 cut(s) 389, 679
MluCI AATT 5 cut(s) 74, 118, 376, 629, 705
Mly113I GGCGCC 1 cut(s) 433
MnlI CCTC 9 cut(s) 257, 262, 282, 295, 423, 448, 457, 485, 599
MseI TTAA 3 cut(s) 231, 483, 666
MspA1I CMGCKG 1 cut(s) 607
MwoI GCNNNNNNNGC 3 cut(s) 338, 404, 432
NarI GGCGCC 1 cut(s) 433
NdeII GATC 4 cut(s) 51, 389, 679, 727
NlaIII CATG 3 cut(s) 130, 173, 728
NlaIV GGNNCC 2 cut(s) 434, 612
NmuCI GTSAC 2 cut(s) 140, 451
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PfeI GAWTC 4 cut(s) 401, 442, 541, 572
PkrI GCNGC 2 cut(s) 100, 340
PluTI GGCGCC 1 cut(s) 436
PspFI CCCAGC 1 cut(s) 603
PspN4I GGNNCC 2 cut(s) 434, 612
PstI CTGCAG 1 cut(s) 409
PsuI RGATCY 2 cut(s) 389, 679
PvuII CAGCTG 1 cut(s) 607
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SaqAI TTAA 3 cut(s) 231, 483, 666
SatI GCNGC 2 cut(s) 99, 339
Sau3AI GATC 4 cut(s) 51, 389, 679, 727
SfaNI GCATC 1 cut(s) 53
SfcI CTRYAG 2 cut(s) 405, 421
SfoI GGCGCC 1 cut(s) 434
Sse9I AATT 5 cut(s) 74, 118, 376, 629, 705
SsiI CCGC 2 cut(s) 99, 196
SspDI GGCGCC 1 cut(s) 432
SspMI CTAG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 218
TaaI ACNGT 4 cut(s) 39, 106, 192, 236
TaiI ACGT 1 cut(s) 507
TaqI TCGA 2 cut(s) 440, 730
TasI AATT 5 cut(s) 74, 118, 376, 629, 705
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 4 cut(s) 401, 442, 541, 572
Tru1I TTAA 3 cut(s) 231, 483, 666
Tru9I TTAA 3 cut(s) 231, 483, 666
TseFI GTSAC 2 cut(s) 140, 451
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 140, 451
TspDTI ATGAA 4 cut(s) 48, 128, 158, 711
XapI RAATTY 1 cut(s) 118
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.