Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Reverse (-)

11593507 .. 11594888

Gene Structure 1382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0134600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGCATTACCAGAGCGAGTACGGTAGAGACAAGACCACCGACGAGATCCGCCGGAGTGAGGACCCGGTTAACCATGGTTTAACTGAAGCAACCACCGGGTACGGCATTCATGACACTAAAACAGGCTACGGAACTCATGGCACGGCCACTGGGCCCACTGGCTTCGCTGCAACAACGGCCGGTGGTCACGGGTTCCCGAATCACCGGTCTGACATCTCAAGCTCTTCTGAGGATGATGGGTACGGAGGGAGGAGGGAGAGGAAGGGTTTGAAGGAGAAGATGCCAGGTGGCACACACCGGTCCGACGACCCCTACGGTACGACCCCGATTACCACACCTTATGGTGGACAGCACCAGGATAAGGGAGTGATGGACAAACTCAAAGAGAAGCTCCCAGGAGGTCACAAGGACGATCCCCACAGTACAACTCATACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGAGTGGTGGACAAGATCAAAGAGAAGCTACCAGGTGGTCACAAGGATGATCCCTACAGTACTACTGACACCACTACTACACCGGGTTACGGCGTGGCCGGAGAGCACCATGAGAATAAGGGCTTGAAGGAGAAGATTGAGAAGCTGCCAGGCGGCAACAGTGACCATAGCGGCACTACTAATACGCCACCTTTTGATACCAGAGCCCATGAGAAGAAGGGAATGATGGACAAGATTAAAGAGAAGCTTCCCGGCCACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

249

Amino Acids

26.89

Weight (kDa)

6.46

Isoelectric Point (pI)

28.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dehydrin	PF00257	21 - 136	2.7e-15	Dehydrin
Dehydrin	PF00257	116 - 176	3.9e-15	Dehydrin
Dehydrin	PF00257	218 - 249	2.2e-08	Dehydrin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	52, 639, 657
AclWI	GGATC	3 cut(s)	43, 410, 530
AcoI	YGGCCR	5 cut(s)	147, 180, 462, 582, 739
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	6 cut(s)	23, 104, 245, 322, 427, 547
AfiI	CCNNNNNNNGG	5 cut(s)	61, 347, 364, 455, 575
AgeI	ACCGGT	2 cut(s)	207, 300
AgsI	TTSAA	2 cut(s)	274, 613
AjnI	CCWGG	5 cut(s)	286, 357, 397, 517, 634
AluBI	AGCT	5 cut(s)	225, 394, 514, 631, 733
AluI	AGCT	5 cut(s)	225, 394, 514, 631, 733
Alw21I	GWGCWC	2 cut(s)	474, 594
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	3 cut(s)	43, 410, 530
AoxI	GGCC	6 cut(s)	147, 155, 180, 462, 582, 739
ApaI	GGGCCC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	170, 631
ArsI	GACNNNNNNTTYG	2 cut(s)	194, 226
AsiGI	ACCGGT	2 cut(s)	207, 300
AspS9I	GGNCC	4 cut(s)	64, 155, 156, 303
AsuC2I	CCSGG	5 cut(s)	68, 100, 450, 570, 738
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	2 cut(s)	64, 303
BaeGI	GKGCMC	1 cut(s)	159
BanII	GRGCYC	2 cut(s)	159, 694
Bbv12I	GWGCWC	2 cut(s)	474, 594
BbvI	GCAGC	2 cut(s)	157, 618
BccI	CCATC	3 cut(s)	233, 367, 706
BceAI	ACGGC	5 cut(s)	121, 162, 195, 472, 592
BciT130I	CCWGG	5 cut(s)	288, 359, 399, 519, 636
BcnI	CCSGG	5 cut(s)	68, 100, 450, 570, 738
BcoDI	GTCTC	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	541
BisI	GCNGC	4 cut(s)	171, 632, 640, 658
BlsI	GCNGC	4 cut(s)	172, 633, 641, 659
BmcAI	AGTACT	1 cut(s)	547
Bme18I	GGWCC	2 cut(s)	64, 303
BmgT120I	GGNCC	4 cut(s)	64, 155, 156, 303
BmiI	GGNNCC	3 cut(s)	66, 157, 197
BmrI	ACTGGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	273
BmuI	ACTGGG	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	5 cut(s)	68, 100, 450, 570, 738
BsaJI	CCNNGG	2 cut(s)	76, 397
BsaWI	WCCGGW	2 cut(s)	207, 300
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 347, 364, 455, 575
Bse118I	RCCGGY	3 cut(s)	182, 207, 300
Bse1I	ACTGG	2 cut(s)	157, 166
BseBI	CCWGG	5 cut(s)	288, 359, 399, 519, 636
BseDI	CCNNGG	2 cut(s)	76, 397
BseGI	GGATG	2 cut(s)	241, 538
BseLI	CCNNNNNNNGG	5 cut(s)	61, 347, 364, 455, 575
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	2 cut(s)	157, 166
BseRI	GAGGAG	1 cut(s)	268
BseSI	GKGCMC	1 cut(s)	159
BseX3I	CGGCCG	1 cut(s)	180
BseXI	GCAGC	2 cut(s)	157, 618
Bsh1285I	CGRYCG	1 cut(s)	183
BshFI	GGCC	6 cut(s)	149, 157, 182, 464, 584, 741
BshTI	ACCGGT	2 cut(s)	207, 300
BsiEI	CGRYCG	1 cut(s)	183
BsiHKAI	GWGCWC	2 cut(s)	474, 594
BslI	CCNNNNNNNGG	5 cut(s)	61, 347, 364, 455, 575
BsmAI	GTCTC	1 cut(s)	24
BsmI	GAATGC	1 cut(s)	108
BsnI	GGCC	6 cut(s)	149, 157, 182, 464, 584, 741
Bsp120I	GGGCCC	1 cut(s)	155
Bsp1286I	GDGCHC	4 cut(s)	159, 474, 594, 694
Bsp143I	GATC	4 cut(s)	48, 415, 501, 535
Bsp19I	CCATGG	1 cut(s)	76
BspACI	CCGC	3 cut(s)	52, 639, 657
BspANI	GGCC	6 cut(s)	149, 157, 182, 464, 584, 741
BspCNI	CTCAG	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	66, 157, 197
BspPI	GGATC	3 cut(s)	43, 410, 530
BspQI	GCTCTTC	1 cut(s)	232
BsrFI	RCCGGY	3 cut(s)	182, 207, 300
BsrI	ACTGG	2 cut(s)	157, 166
BssAI	RCCGGY	3 cut(s)	182, 207, 300
BssECI	CCNNGG	2 cut(s)	76, 397
BssMI	GATC	4 cut(s)	48, 415, 501, 535
BssT1I	CCWWGG	1 cut(s)	76
Bst2UI	CCWGG	5 cut(s)	288, 359, 399, 519, 636
Bst4CI	ACNGT	5 cut(s)	26, 320, 425, 545, 647
Bst6I	CTCTTC	1 cut(s)	232
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	241, 538
BstKTI	GATC	4 cut(s)	51, 418, 504, 538
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	4 cut(s)	48, 415, 501, 535
BstMCI	CGRYCG	1 cut(s)	183
BstMWI	GCNNNNNNNGC	1 cut(s)	179
BstNI	CCWGG	5 cut(s)	288, 359, 399, 519, 636
BstSFI	CTRYAG	1 cut(s)	541
BstSLI	GKGCMC	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	157, 618
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	180
BsuRI	GGCC	6 cut(s)	149, 157, 182, 464, 584, 741
BtgI	CCRYGG	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	241, 538
BtsIMutI	CAGTG	3 cut(s)	150, 159, 652
CciI	TCATGA	1 cut(s)	112
Cfr10I	RCCGGY	3 cut(s)	182, 207, 300
Cfr13I	GGNCC	4 cut(s)	64, 155, 156, 303
CpoI	CGGWCCG	1 cut(s)	303
CsiI	ACCWGGT	1 cut(s)	517
Csp6I	GTAC	6 cut(s)	22, 103, 244, 321, 426, 546
CspAI	ACCGGT	2 cut(s)	207, 300
CspI	CGGWCCG	1 cut(s)	303
CviAII	CATG	6 cut(s)	77, 113, 140, 476, 596, 695
CviQI	GTAC	6 cut(s)	22, 103, 244, 321, 426, 546
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	4 cut(s)	50, 417, 503, 537
DpnII	GATC	4 cut(s)	48, 415, 501, 535
EaeI	YGGCCR	5 cut(s)	147, 180, 462, 582, 739
EagI	CGGCCG	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
EciI	GGCGGA	1 cut(s)	41
EclXI	CGGCCG	1 cut(s)	180
Eco130I	CCWWGG	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	159, 694
Eco47I	GGWCC	2 cut(s)	64, 303
Eco52I	CGGCCG	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	64
EcoRII	CCWGG	5 cut(s)	286, 357, 397, 517, 634
EcoT14I	CCWWGG	1 cut(s)	76
EcoT38I	GRGCYC	2 cut(s)	159, 694
ErhI	CCWWGG	1 cut(s)	76
FaeI	CATG	6 cut(s)	80, 116, 143, 479, 599, 698
FaiI	YATR	9 cut(s)	78, 114, 141, 345, 435, 477, 597, 654, 696
FalI	AAGNNNNNCTT	2 cut(s)	717, 749
FatI	CATG	6 cut(s)	76, 112, 139, 475, 595, 694
Fnu4HI	GCNGC	4 cut(s)	171, 632, 640, 658
FokI	GGATG	2 cut(s)	248, 545
FriOI	GRGCYC	2 cut(s)	159, 694
Fsp4HI	GCNGC	4 cut(s)	171, 632, 640, 658
GluI	GCNGC	4 cut(s)	171, 632, 640, 658
HaeIII	GGCC	6 cut(s)	149, 157, 182, 464, 584, 741
Hin1II	CATG	6 cut(s)	80, 116, 143, 479, 599, 698
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	731
HinfI	GANTC	1 cut(s)	202
HpaI	GTTAAC	1 cut(s)	73
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	3 cut(s)	73, 350, 496
Hpy188I	TCNGA	3 cut(s)	214, 232, 307
Hpy188III	TCNNGA	2 cut(s)	113, 199
Hpy8I	GTNNAC	3 cut(s)	73, 350, 496
Hpy99I	CGWCG	2 cut(s)	47, 311
HpyAV	CCTTC	4 cut(s)	259, 268, 607, 697
HpyCH4III	ACNGT	5 cut(s)	26, 320, 425, 545, 647
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	179
HpyF3I	CTNAG	1 cut(s)	231
Hsp92II	CATG	6 cut(s)	80, 116, 143, 479, 599, 698
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	48, 415, 501, 535
LguI	GCTCTTC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	4, 399
Lsp1109I	GCAGC	2 cut(s)	157, 618
LweI	GCATC	1 cut(s)	273
MabI	ACCWGGT	1 cut(s)	517
MaeIII	GTNAC	6 cut(s)	188, 404, 452, 524, 572, 647
MalI	GATC	4 cut(s)	50, 417, 503, 537
MboI	GATC	4 cut(s)	48, 415, 501, 535
MboII	GAAGA	4 cut(s)	219, 292, 631, 712
MflI	RGATCY	1 cut(s)	48
MhlI	GDGCHC	4 cut(s)	159, 474, 594, 694
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	7 cut(s)	55, 226, 242, 246, 249, 255, 395
MseI	TTAA	3 cut(s)	72, 83, 723
MslI	CAYNNNNRTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	5 cut(s)	288, 359, 399, 519, 636
MwoI	GCNNNNNNNGC	1 cut(s)	179
NciI	CCSGG	5 cut(s)	68, 100, 450, 570, 738
NcoI	CCATGG	1 cut(s)	76
NdeII	GATC	4 cut(s)	48, 415, 501, 535
NlaIII	CATG	6 cut(s)	80, 116, 143, 479, 599, 698
NlaIV	GGNNCC	3 cut(s)	66, 157, 197
NmuCI	GTSAC	4 cut(s)	188, 404, 524, 647
PagI	TCATGA	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	232
PctI	GAATGC	1 cut(s)	108
PfeI	GAWTC	1 cut(s)	202
PinAI	ACCGGT	2 cut(s)	207, 300
PkrI	GCNGC	4 cut(s)	172, 633, 641, 659
PpuMI	RGGWCCY	1 cut(s)	64
Psp5II	RGGWCCY	1 cut(s)	64
Psp6I	CCWGG	5 cut(s)	286, 357, 397, 517, 634
PspGI	CCWGG	5 cut(s)	286, 357, 397, 517, 634
PspN4I	GGNNCC	3 cut(s)	66, 157, 197
PspOMI	GGGCCC	1 cut(s)	155
PspPI	GGNCC	4 cut(s)	64, 155, 156, 303
PspPPI	RGGWCCY	1 cut(s)	64
PsuI	RGATCY	1 cut(s)	48
RsaI	GTAC	6 cut(s)	23, 104, 245, 322, 427, 547
RsaNI	GTAC	6 cut(s)	22, 103, 244, 321, 426, 546
RseI	CAYNNNNRTG	1 cut(s)	531
Rsr2I	CGGWCCG	1 cut(s)	303
RsrII	CGGWCCG	1 cut(s)	303
SapI	GCTCTTC	1 cut(s)	232
SaqAI	TTAA	3 cut(s)	72, 83, 723
SatI	GCNGC	4 cut(s)	171, 632, 640, 658
Sau3AI	GATC	4 cut(s)	48, 415, 501, 535
Sau96I	GGNCC	4 cut(s)	64, 155, 156, 303
ScaI	AGTACT	1 cut(s)	547
SduI	GDGCHC	4 cut(s)	159, 474, 594, 694
SexAI	ACCWGGT	1 cut(s)	517
SfaNI	GCATC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	541
SinI	GGWCC	2 cut(s)	64, 303
SmiMI	CAYNNNNRTG	1 cut(s)	531
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	3 cut(s)	52, 639, 657
StyI	CCWWGG	1 cut(s)	76
TaaI	ACNGT	5 cut(s)	26, 320, 425, 545, 647
TatI	WGTACW	2 cut(s)	425, 545
TauI	GCSGC	2 cut(s)	642, 660
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	72, 83, 723
Tru9I	TTAA	3 cut(s)	72, 83, 723
TscAI	CASTG	3 cut(s)	157, 166, 652
TseFI	GTSAC	4 cut(s)	188, 404, 524, 647
TseI	GCWGC	2 cut(s)	170, 631
Tsp45I	GTSAC	4 cut(s)	188, 404, 524, 647
TspDTI	ATGAA	1 cut(s)	101
TspGWI	ACGGA	2 cut(s)	147, 261
TspRI	CASTG	3 cut(s)	157, 166, 652
VpaK11BI	GGWCC	2 cut(s)	64, 303
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.