Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

9483805 .. 9485103

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g16440.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAAGAACAGCAACACCAAGCTGATTCTTCTCCACCCTTACATCCAAAAACAAGGCAGCTCCAACCGCCTATGGCTTCTCACCTTCATGTCCTTGTTCACCCTCGCCTTTCTTCTCACAATCATCTACACCAGCGGTTTGTATGTATATTCAACAGCAACCACAACAGCCACCTCAACCGCGAACACAGCCGCCACAATAACTGCCACCAACTCCCCAATGCCGACCACCGTGATCAACACGCTCCTCCACTACGCTTCCAAATCAAACGACACGTTCAAGATGTCGTACTCCGAGATCAAACCCATCTCGGACGTACTACGTAAATGCTCCTCCCCTTGTAACTTCCTCATCTTCGGCCTCACACACGAAACCCTTCTCTGGAAAGCCCTAAACCACAACGGCAGGACTGTCTTCATCGACGAGAACCGCTACTACGCCGCCTACATAGAAGAAAAGCACCCGGAAATCGACGCCTACGATGTTCAATACACAACCAAGACTAAAGAAATGACCGAGTTGATCAAAGTCGCCAAAGAACAGATCAGAAACGAGTGCCGGCCGGTTCAGAATCTCTTGTTCTCGGAATGCAAGCTCGGAATCAACGATCTTCCGAACCATGTATACGAGGTGGACTGGGACGTAATCCTGATCGACGGACCAAGAGGAGACTGGCCGGACTCTCCCGGGAGAATCTCTCCTATATTCACGTCCGGCGTTTTGGCCCGGAGCAAAAAAGGCGGGAGCGGGAAGACGCACGTGTTCGTTCATGACTTCAGGAGAAACGTGGAGAGGGTTTGCGGGGATGAGTTTCTGTGCAGAGAGAATTTGGTGGAGGAGAGTGAGACGCTGGGGCATTATGTGGTGGAGAGGATGGAGGAGACTAGCTTCCAGTTCTGTCGCAACAACAACAACCGTGGAGTGACGTCATCGTCGTCGTCGGCGGCGAATAATTCGTCTCCTTATTCTTCCTCGTCTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

328

Amino Acids

36.92

Weight (kDa)

7.1

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	99 - 287	1.9e-81	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	931
AatII	GACGTC	1 cut(s)	929
AccBSI	CCGCTC	1 cut(s)	747
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	1 cut(s)	182
AcoI	YGGCCR	2 cut(s)	560, 674
AcsI	RAATTY	1 cut(s)	826
AcuI	CTGAAG	1 cut(s)	760
AcvI	CACGTG	1 cut(s)	760
AcyI	GRCGYC	2 cut(s)	474, 926
AfaI	GTAC	2 cut(s)	290, 318
AfiI	CCNNNNNNNGG	1 cut(s)	381
AflIII	ACRYGT	2 cut(s)	273, 759
AgsI	TTSAA	3 cut(s)	153, 280, 488
AjiI	CACGTC	1 cut(s)	711
AluBI	AGCT	4 cut(s)	22, 60, 595, 888
AluI	AGCT	4 cut(s)	22, 60, 595, 888
Alw26I	GTCTC	4 cut(s)	663, 839, 875, 963
Ama87I	CYCGRG	1 cut(s)	686
AoxI	GGCC	4 cut(s)	358, 560, 674, 723
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	826
ArsI	GACNNNNNNTTYG	2 cut(s)	941, 973
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	2 cut(s)	659, 724
AsuC2I	CCSGG	4 cut(s)	464, 687, 688, 727
AsuHPI	GGTGA	2 cut(s)	73, 91
AvaI	CYCGRG	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	659
BbrPI	CACGTG	1 cut(s)	760
BbsI	GAAGAC	2 cut(s)	406, 758
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	314, 868
BceAI	ACGGC	1 cut(s)	418
BclI	TGATCA	2 cut(s)	234, 522
BcnI	CCSGG	4 cut(s)	464, 687, 688, 727
BcoDI	GTCTC	4 cut(s)	663, 839, 875, 963
BfaI	CTAG	1 cut(s)	885
BisI	GCNGC	4 cut(s)	58, 192, 441, 945
BlsI	GCNGC	4 cut(s)	59, 193, 442, 946
Bme1390I	CCNGG	4 cut(s)	464, 687, 688, 727
Bme18I	GGWCC	1 cut(s)	659
BmeT110I	CYCGRG	1 cut(s)	686
BmgBI	CACGTC	1 cut(s)	711
BmgT120I	GGNCC	2 cut(s)	659, 724
BmrFI	CCNGG	4 cut(s)	464, 687, 688, 727
BmrI	ACTGGG	1 cut(s)	646
BmuI	ACTGGG	1 cut(s)	646
BpiI	GAAGAC	2 cut(s)	406, 758
BplI	GAGNNNNNCTC	2 cut(s)	682, 714
BpuMI	CCSGG	4 cut(s)	464, 687, 688, 727
BsaAI	YACGTR	2 cut(s)	323, 760
BsaHI	GRCGYC	2 cut(s)	474, 926
BsaJI	CCNNGG	2 cut(s)	686, 916
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	2 cut(s)	558, 562
Bse1I	ACTGG	3 cut(s)	641, 677, 892
BseDI	CCNNGG	2 cut(s)	686, 916
BseGI	GGATG	3 cut(s)	42, 811, 879
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseNI	ACTGG	3 cut(s)	641, 677, 892
BseRI	GAGGAG	5 cut(s)	236, 322, 681, 851, 893
BseX3I	CGGCCG	1 cut(s)	560
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	850
BsgI	GTGCAG	1 cut(s)	838
Bsh1236I	CGCG	1 cut(s)	182
Bsh1285I	CGRYCG	1 cut(s)	563
BshFI	GGCC	4 cut(s)	360, 562, 676, 725
BsiEI	CGRYCG	1 cut(s)	563
BsiHKCI	CYCGRG	1 cut(s)	686
BsiSI	CCGG	7 cut(s)	464, 559, 563, 677, 687, 714, 727
BslFI	GGGAC	1 cut(s)	653
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	4 cut(s)	663, 839, 875, 963
BsmBI	CGTCTC	2 cut(s)	839, 963
BsmFI	GGGAC	1 cut(s)	653
BsmI	GAATGC	1 cut(s)	593
BsnI	GGCC	4 cut(s)	360, 562, 676, 725
BsoBI	CYCGRG	1 cut(s)	686
Bsp143I	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
BspANI	GGCC	4 cut(s)	360, 562, 676, 725
BspFNI	CGCG	1 cut(s)	182
BspHI	TCATGA	1 cut(s)	769
BsrBI	CCGCTC	1 cut(s)	747
BsrFI	RCCGGY	2 cut(s)	558, 562
BsrI	ACTGG	3 cut(s)	641, 677, 892
BssAI	RCCGGY	2 cut(s)	558, 562
BssECI	CCNNGG	2 cut(s)	686, 916
BssMI	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
BssNAI	GTATAC	1 cut(s)	625
BssNI	GRCGYC	2 cut(s)	474, 926
Bst1107I	GTATAC	1 cut(s)	625
Bst4CI	ACNGT	3 cut(s)	232, 412, 917
BstACI	GRCGYC	2 cut(s)	474, 926
BstBAI	YACGTR	2 cut(s)	323, 760
BstC8I	GCNNGC	2 cut(s)	560, 593
BstDEI	CTNAG	1 cut(s)	978
BstDSI	CCRYGG	1 cut(s)	916
BstF5I	GGATG	3 cut(s)	42, 811, 879
BstFNI	CGCG	1 cut(s)	182
BstKTI	GATC	6 cut(s)	237, 300, 525, 546, 610, 654
BstMAI	GTCTC	4 cut(s)	663, 839, 875, 963
BstMBI	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
BstMCI	CGRYCG	1 cut(s)	563
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 188, 738
BstSCI	CCNGG	4 cut(s)	462, 685, 686, 725
BstSNI	TACGTA	1 cut(s)	323
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	406, 758
BstZ17I	GTATAC	1 cut(s)	625
BstZI	CGGCCG	1 cut(s)	560
BsuRI	GGCC	4 cut(s)	360, 562, 676, 725
BtgI	CCRYGG	1 cut(s)	916
BtrI	CACGTC	1 cut(s)	711
BtsCI	GGATG	3 cut(s)	42, 811, 879
Cac8I	GCNNGC	2 cut(s)	560, 593
CciI	TCATGA	1 cut(s)	769
Cfr10I	RCCGGY	2 cut(s)	558, 562
Cfr13I	GGNCC	2 cut(s)	659, 724
Cfr9I	CCCGGG	1 cut(s)	686
CseI	GACGC	3 cut(s)	482, 763, 856
Csp6I	GTAC	2 cut(s)	289, 317
CspCI	CAANNNNNGTGG	2 cut(s)	898, 933
CviAII	CATG	3 cut(s)	88, 620, 770
CviQI	GTAC	2 cut(s)	289, 317
DdeI	CTNAG	1 cut(s)	978
DpnI	GATC	6 cut(s)	236, 299, 524, 545, 609, 653
DpnII	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
DrdI	GACNNNNNNGTC	1 cut(s)	931
DseDI	GACNNNNNNGTC	1 cut(s)	931
EaeI	YGGCCR	2 cut(s)	560, 674
EagI	CGGCCG	1 cut(s)	560
EclXI	CGGCCG	1 cut(s)	560
Eco105I	TACGTA	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	659
Eco52I	CGGCCG	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	760
Eco72I	CACGTG	1 cut(s)	760
Eco88I	CYCGRG	1 cut(s)	686
Esp3I	CGTCTC	2 cut(s)	839, 963
FaeI	CATG	3 cut(s)	91, 623, 773
FaqI	GGGAC	1 cut(s)	653
FatI	CATG	3 cut(s)	87, 619, 769
FauI	CCCGC	3 cut(s)	734, 740, 794
FbaI	TGATCA	2 cut(s)	234, 522
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	4 cut(s)	58, 192, 441, 945
FokI	GGATG	3 cut(s)	29, 818, 886
Fsp4HI	GCNGC	4 cut(s)	58, 192, 441, 945
FspBI	CTAG	1 cut(s)	885
GluI	GCNGC	4 cut(s)	58, 192, 441, 945
GsaI	CCCAGC	1 cut(s)	854
HaeIII	GGCC	4 cut(s)	360, 562, 676, 725
HapII	CCGG	7 cut(s)	464, 559, 563, 677, 687, 714, 727
HgaI	GACGC	3 cut(s)	482, 763, 856
Hin1I	GRCGYC	2 cut(s)	474, 926
Hin1II	CATG	3 cut(s)	91, 623, 773
HinfI	GANTC	5 cut(s)	25, 571, 600, 680, 693
HpaII	CCGG	7 cut(s)	464, 559, 563, 677, 687, 714, 727
HphI	GGTGA	2 cut(s)	73, 91
Hpy166II	GTNNAC	3 cut(s)	99, 625, 634
Hpy188I	TCNGA	7 cut(s)	295, 313, 548, 570, 586, 599, 615
Hpy188III	TCNNGA	5 cut(s)	280, 382, 649, 770, 778
Hpy8I	GTNNAC	3 cut(s)	99, 625, 634
Hpy99I	CGWCG	6 cut(s)	425, 476, 659, 937, 940, 943
HpyAV	CCTTC	2 cut(s)	94, 386
HpyCH4III	ACNGT	3 cut(s)	232, 412, 917
HpyCH4IV	ACGT	8 cut(s)	275, 315, 322, 642, 710, 759, 786, 926
HpyCH4V	TGCA	2 cut(s)	591, 819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 188, 738
HpyF3I	CTNAG	1 cut(s)	978
HpySE526I	ACGT	8 cut(s)	275, 315, 322, 642, 710, 759, 786, 926
Hsp92I	GRCGYC	2 cut(s)	474, 926
Hsp92II	CATG	3 cut(s)	91, 623, 773
KroI	GCCGGC	1 cut(s)	558
KroNI	GCCGGC	1 cut(s)	560
Ksp22I	TGATCA	2 cut(s)	234, 522
Kzo9I	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
LmnI	GCTCC	5 cut(s)	65, 249, 335, 729, 744
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	885
MaeII	ACGT	8 cut(s)	275, 315, 322, 642, 710, 759, 786, 926
MaeIII	GTNAC	2 cut(s)	341, 922
MalI	GATC	6 cut(s)	236, 299, 524, 545, 609, 653
MbiI	CCGCTC	1 cut(s)	747
MboI	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
MboII	GAAGA	9 cut(s)	16, 20, 104, 346, 406, 464, 602, 763, 960
MluCI	AATT	2 cut(s)	826, 952
MlyI	GAGTC	1 cut(s)	674
MmeI	TCCRAC	1 cut(s)	87
MroNI	GCCGGC	1 cut(s)	558
MroXI	GAANNNNTTC	1 cut(s)	375
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	7 cut(s)	464, 559, 563, 677, 687, 714, 727
MspR9I	CCNGG	4 cut(s)	464, 687, 688, 727
Mva1269I	GAATGC	1 cut(s)	593
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	3 cut(s)	66, 188, 738
NaeI	GCCGGC	1 cut(s)	560
NciI	CCSGG	4 cut(s)	464, 687, 688, 727
NdeII	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
NgoMIV	GCCGGC	1 cut(s)	558
NlaIII	CATG	3 cut(s)	91, 623, 773
NmuCI	GTSAC	1 cut(s)	922
PagI	TCATGA	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	4 cut(s)	477, 603, 932, 944
PctI	GAATGC	1 cut(s)	593
PdiI	GCCGGC	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	4 cut(s)	25, 571, 600, 693
PkrI	GCNGC	4 cut(s)	59, 193, 442, 946
PleI	GAGTC	1 cut(s)	674
PmaCI	CACGTG	1 cut(s)	760
PmlI	CACGTG	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	674
Ppu21I	YACGTR	2 cut(s)	323, 760
PspCI	CACGTG	1 cut(s)	760
PspFI	CCCAGC	1 cut(s)	850
PspPI	GGNCC	2 cut(s)	659, 724
PsrI	GAACNNNNNNTAC	4 cut(s)	419, 451, 608, 640
RsaI	GTAC	2 cut(s)	290, 318
RsaNI	GTAC	2 cut(s)	289, 317
RseI	CAYNNNNRTG	1 cut(s)	86
SatI	GCNGC	4 cut(s)	58, 192, 441, 945
Sau3AI	GATC	6 cut(s)	234, 297, 522, 543, 607, 651
Sau96I	GGNCC	2 cut(s)	659, 724
SchI	GAGTC	1 cut(s)	674
ScrFI	CCNGG	4 cut(s)	464, 687, 688, 727
SinI	GGWCC	1 cut(s)	659
SmaI	CCCGGG	1 cut(s)	688
SmiMI	CAYNNNNRTG	1 cut(s)	86
SnaBI	TACGTA	1 cut(s)	323
Sse9I	AATT	2 cut(s)	826, 952
SspMI	CTAG	1 cut(s)	885
StyD4I	CCNGG	4 cut(s)	462, 685, 686, 725
TaaI	ACNGT	3 cut(s)	232, 412, 917
TaiI	ACGT	8 cut(s)	278, 318, 325, 645, 713, 762, 789, 929
TaqI	TCGA	3 cut(s)	420, 471, 654
TaqII	GACCGA	1 cut(s)	530
TasI	AATT	2 cut(s)	826, 952
TauI	GCSGC	3 cut(s)	194, 443, 947
TfiI	GAWTC	4 cut(s)	25, 571, 600, 693
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	4 cut(s)	17, 76, 406, 758
TspGWI	ACGGA	1 cut(s)	672
TspMI	CCCGGG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	669
XmaI	CCCGGG	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	624
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	1 cut(s)	885
ZraI	GACGTC	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.