AT5G67210

xylan biosynthetic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0014161
Physical Location & Seq
Forward (+)
26818949 .. 26820157
1209 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G67210.1

Sequence Viewer

Length: 954 bp
ATGAAAAGTGGAGGGAACACAAACACTAAACTCATACTTGTTCATCCATACATTCAAAAGCAAACAAGCACAAATCGTCTATGGCTTCTCGCTTTCGTTTCTTTCTTCACAATCGCTTTTCTCCTAACTCTTCTCTACACCACCGACTCCATCATCTCTTCTAAAAACAACTCCGCCACCGTCTCCTCCGCCGTCAATTCTGCCGTCACCACCGCTACCATCTCTCAGTTACCAACAACAGCCATCAATGCAATGCTTCACTACGCTTCAAGATCAAACGACAGCTACCACATGTCATACGGAGAGATGAAATCAATCTCCGACGTCCTCCGCCGCTGCTCTCCGCCGTGTAATCTCTTAGTCTTCGGTCTTACACACGAAACCCTTCTCTGGAAATCGCTAAACCACAACGGGCGTACAGTTTTCATCGAAGAGAATCGTTACTACGCTGCTTACTTCGAAGAAATCCACCCGGAGATCGAAGTCTTCGATGTTCAGTACACGACCAAAGCTCGTGAGGCGCGTGAGCTTGTGTCGGCGGTTAAAGAAGCGGCGAGGAACGAGTGTCGTCCAGTGCAGAATCTTCTCTTTTCAGATTGTAAATTAGGACTCAATGATTTGCCGAATCATGTATACGATGTTGATTGGGATGTGATCTTAGTTGATGGACCACGTGGCGACGGTGGAGATGTACCGGGGAGGATGTCGTCGATTTTCACGGCGGCGGTTCTTGCTCGGAGTAAAAAAGGCGGGAATCCGAAGACGCATGTGTTTGTTCATGATTATTACAGAGATGTTGAGAGACTTTGTGGGGATGAGTTTCTTTGCCGGGAGAATCTTGTGGAATCTAATGATCTGCTTGCGCACTACGTGTTGGAGAAGATGGATAAAAACAGCACGCAGTTCTGTCGTGGTCGTAAGAAGAAACGCTCTGTTTCTTCTCCATCGGCTTGA

Protein Analysis

317

Amino Acids

35.66

Weight (kDa)

8.1

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 102 - 290 3.2e-82 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50220 AT5G67210
fragaria_vesca FvH4_1g16440
malus_domestica MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica Prupe.6G230900_v2.0.a1
pyrus_communis pycom02g14310 pycom15g25040
rosa_chinensis RchiOBHm_Chr2g0106321
rosa_laevigata RLG00000017488
rosa_roxburghii Rroxscaffold_2G00137280
rosa_rugosa Rorug02G0134600
rosa_samantha Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana Rw2G014480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 327
Acc16I TGCGCA 1 cut(s) 864
AccI GTMKAC 1 cut(s) 633
AccII CGCG 1 cut(s) 523
AcvI CACGTG 1 cut(s) 674
AcyI GRCGYC 1 cut(s) 324
AdeI CACNNNGTG 1 cut(s) 871
AfaI GTAC 3 cut(s) 418, 500, 693
AfiI CCNNNNNNNGG 1 cut(s) 390
AflIII ACRYGT 2 cut(s) 291, 870
AgsI TTSAA 2 cut(s) 56, 270
AluBI AGCT 3 cut(s) 285, 512, 529
AluI AGCT 3 cut(s) 285, 512, 529
Alw26I GTCTC 2 cut(s) 187, 796
ApeKI GCWGC 2 cut(s) 336, 449
Asp700I GAANNNNTTC 1 cut(s) 384
AspLEI GCGC 2 cut(s) 523, 865
AspS9I GGNCC 1 cut(s) 668
AsuC2I CCSGG 3 cut(s) 473, 696, 830
AsuHPI GGTGA 1 cut(s) 199
AsuII TTCGAA 1 cut(s) 459
AvaII GGWCC 1 cut(s) 668
BauI CACGAG 1 cut(s) 513
BbrPI CACGTG 1 cut(s) 674
BbsI GAAGAC 3 cut(s) 355, 478, 767
BbvI GCAGC 2 cut(s) 323, 436
BccI CCATC 6 cut(s) 158, 227, 251, 659, 877, 952
BceAI ACGGC 4 cut(s) 176, 188, 331, 735
BcgI CGANNNNNNTGC 2 cut(s) 890, 924
BcnI CCSGG 3 cut(s) 473, 696, 830
BcoDI GTCTC 2 cut(s) 187, 796
BisI GCNGC 5 cut(s) 334, 337, 450, 552, 723
BlsI GCNGC 5 cut(s) 335, 338, 451, 553, 724
Bme1390I CCNGG 3 cut(s) 473, 696, 830
Bme18I GGWCC 1 cut(s) 668
BmgT120I GGNCC 1 cut(s) 668
BmrFI CCNGG 3 cut(s) 473, 696, 830
BpiI GAAGAC 3 cut(s) 355, 478, 767
Bpu14I TTCGAA 1 cut(s) 459
BpuMI CCSGG 3 cut(s) 473, 696, 830
BsaAI YACGTR 2 cut(s) 674, 871
BsaHI GRCGYC 1 cut(s) 324
BsaJI CCNNGG 1 cut(s) 695
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse1I ACTGG 1 cut(s) 572
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 695
BseGI GGATG 4 cut(s) 43, 655, 708, 820
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 572
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 2 cut(s) 323, 436
BsgI GTGCAG 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 523
BsiSI CCGG 3 cut(s) 473, 695, 829
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 2 cut(s) 187, 796
BsmBI CGTCTC 1 cut(s) 187
Bsp119I TTCGAA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 272, 477, 654, 853
BspCNI CTCAG 1 cut(s) 238
BspFNI CGCG 1 cut(s) 523
BspHI TCATGA 1 cut(s) 778
BspT104I TTCGAA 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 572
BssECI CCNNGG 1 cut(s) 695
BssMI GATC 4 cut(s) 272, 477, 654, 853
BssNAI GTATAC 1 cut(s) 634
BssNI GRCGYC 1 cut(s) 324
BssSI CACGAG 1 cut(s) 513
Bst1107I GTATAC 1 cut(s) 634
Bst2BI CACGAG 1 cut(s) 513
Bst4CI ACNGT 3 cut(s) 181, 421, 683
Bst6I CTCTTC 3 cut(s) 135, 163, 426
BstACI GRCGYC 1 cut(s) 324
BstBAI YACGTR 2 cut(s) 674, 871
BstBI TTCGAA 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 861, 899
BstDEI CTNAG 3 cut(s) 225, 358, 658
BstF5I GGATG 4 cut(s) 43, 655, 708, 820
BstFNI CGCG 1 cut(s) 523
BstHHI GCGC 2 cut(s) 523, 865
BstKTI GATC 4 cut(s) 275, 480, 657, 856
BstMAI GTCTC 2 cut(s) 187, 796
BstMBI GATC 4 cut(s) 272, 477, 654, 853
BstMWI GCNNNNNNNGC 3 cut(s) 248, 518, 731
BstNSI RCATGY 2 cut(s) 295, 770
BstSCI CCNGG 3 cut(s) 471, 694, 828
BstUI CGCG 1 cut(s) 523
BstV1I GCAGC 2 cut(s) 323, 436
BstV2I GAAGAC 3 cut(s) 355, 478, 767
BstZ17I GTATAC 1 cut(s) 634
BtsCI GGATG 4 cut(s) 43, 655, 708, 820
BtsIMutI CAGTG 1 cut(s) 579
Cac8I GCNNGC 2 cut(s) 861, 899
CciI TCATGA 1 cut(s) 778
CfoI GCGC 2 cut(s) 523, 865
Cfr13I GGNCC 1 cut(s) 668
CseI GACGC 1 cut(s) 772
Csp6I GTAC 3 cut(s) 417, 499, 692
CviAII CATG 4 cut(s) 292, 629, 767, 779
CviJI RGCY 6 cut(s) 85, 242, 285, 512, 529, 950
CviKI_1 RGCY 6 cut(s) 85, 242, 285, 512, 529, 950
CviQI GTAC 3 cut(s) 417, 499, 692
DdeI CTNAG 3 cut(s) 225, 358, 658
DpnI GATC 4 cut(s) 274, 479, 656, 855
DpnII GATC 4 cut(s) 272, 477, 654, 853
DraIII CACNNNGTG 1 cut(s) 871
Eam1104I CTCTTC 3 cut(s) 135, 163, 426
EarI CTCTTC 3 cut(s) 135, 163, 426
EciI GGCGGA 4 cut(s) 163, 178, 320, 333
Eco47I GGWCC 1 cut(s) 668
Eco72I CACGTG 1 cut(s) 674
Esp3I CGTCTC 1 cut(s) 187
FaeI CATG 4 cut(s) 295, 632, 770, 782
FaiI YATR 9 cut(s) 35, 49, 82, 293, 298, 630, 634, 768, 780
FatI CATG 4 cut(s) 291, 628, 766, 778
FauI CCCGC 1 cut(s) 743
FblI GTMKAC 1 cut(s) 633
Fnu4HI GCNGC 5 cut(s) 334, 337, 450, 552, 723
FokI GGATG 4 cut(s) 30, 662, 715, 827
Fsp4HI GCNGC 5 cut(s) 334, 337, 450, 552, 723
FspI TGCGCA 1 cut(s) 864
GlaI GCGC 2 cut(s) 522, 864
GluI GCNGC 5 cut(s) 334, 337, 450, 552, 723
HapII CCGG 3 cut(s) 473, 695, 829
HgaI GACGC 1 cut(s) 772
HhaI GCGC 2 cut(s) 523, 865
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 4 cut(s) 295, 632, 770, 782
Hin6I GCGC 2 cut(s) 521, 863
HinP1I GCGC 2 cut(s) 521, 863
HinfI GANTC 8 cut(s) 146, 436, 580, 609, 625, 754, 835, 845
HpaII CCGG 3 cut(s) 473, 695, 829
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 501, 634
Hpy188I TCNGA 4 cut(s) 322, 595, 738, 759
Hpy188III TCNNGA 4 cut(s) 270, 391, 515, 779
Hpy8I GTNNAC 2 cut(s) 501, 634
Hpy99I CGWCG 3 cut(s) 326, 683, 712
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 3 cut(s) 181, 421, 683
HpyCH4IV ACGT 3 cut(s) 324, 673, 870
HpyCH4V TGCA 2 cut(s) 251, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 518, 731
HpyF3I CTNAG 3 cut(s) 225, 358, 658
HpySE526I ACGT 3 cut(s) 324, 673, 870
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 4 cut(s) 295, 632, 770, 782
HspAI GCGC 2 cut(s) 521, 863
Kzo9I GATC 4 cut(s) 272, 477, 654, 853
LpnPI CCDG 5 cut(s) 376, 486, 585, 708, 842
Lsp1109I GCAGC 2 cut(s) 323, 436
MaeII ACGT 3 cut(s) 324, 673, 870
MaeIII GTNAC 3 cut(s) 205, 228, 440
MalI GATC 4 cut(s) 274, 479, 656, 855
MboI GATC 4 cut(s) 272, 477, 654, 853
MluCI AATT 2 cut(s) 196, 602
MlyI GAGTC 2 cut(s) 140, 603
MmeI TCCRAC 2 cut(s) 345, 855
MnlI CCTC 6 cut(s) 5, 196, 338, 511, 549, 693
MroXI GAANNNNTTC 1 cut(s) 384
MseI TTAA 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 3 cut(s) 473, 695, 829
MspR9I CCNGG 3 cut(s) 473, 696, 830
MvnI CGCG 1 cut(s) 523
MwoI GCNNNNNNNGC 3 cut(s) 248, 518, 731
NciI CCSGG 3 cut(s) 473, 696, 830
NdeII GATC 4 cut(s) 272, 477, 654, 853
NlaIII CATG 4 cut(s) 295, 632, 770, 782
NmuCI GTSAC 1 cut(s) 205
NsbI TGCGCA 1 cut(s) 864
NspI RCATGY 2 cut(s) 295, 770
NspV TTCGAA 1 cut(s) 459
PagI TCATGA 1 cut(s) 778
PciI ACATGT 1 cut(s) 291
PcsI WCGNNNNNNNCGW 2 cut(s) 486, 520
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 6 cut(s) 436, 580, 625, 754, 835, 845
PkrI GCNGC 5 cut(s) 335, 338, 451, 553, 724
PleI GAGTC 2 cut(s) 140, 603
PmaCI CACGTG 1 cut(s) 674
PmlI CACGTG 1 cut(s) 674
PpsI GAGTC 2 cut(s) 140, 603
Ppu21I YACGTR 2 cut(s) 674, 871
PscI ACATGT 1 cut(s) 291
PspCI CACGTG 1 cut(s) 674
PspPI GGNCC 1 cut(s) 668
RsaI GTAC 3 cut(s) 418, 500, 693
RsaNI GTAC 3 cut(s) 417, 499, 692
SaqAI TTAA 1 cut(s) 543
SatI GCNGC 5 cut(s) 334, 337, 450, 552, 723
Sau3AI GATC 4 cut(s) 272, 477, 654, 853
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 140, 603
ScrFI CCNGG 3 cut(s) 473, 696, 830
SetI ASST 6 cut(s) 287, 327, 514, 531, 676, 873
SfuI TTCGAA 1 cut(s) 459
SinI GGWCC 1 cut(s) 668
Sse9I AATT 2 cut(s) 196, 602
StyD4I CCNGG 3 cut(s) 471, 694, 828
TaaI ACNGT 3 cut(s) 181, 421, 683
TaiI ACGT 3 cut(s) 327, 676, 873
TaqI TCGA 5 cut(s) 429, 459, 480, 489, 710
TaqII GACCGA 1 cut(s) 356
TasI AATT 2 cut(s) 196, 602
TatI WGTACW 1 cut(s) 498
TauI GCSGC 3 cut(s) 336, 554, 725
TfiI GAWTC 6 cut(s) 436, 580, 625, 754, 835, 845
Tru1I TTAA 1 cut(s) 543
Tru9I TTAA 1 cut(s) 543
TscAI CASTG 1 cut(s) 579
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 336, 449
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 17, 32, 323, 415, 767
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 579
VpaK11BI GGWCC 1 cut(s) 668
XceI RCATGY 2 cut(s) 295, 770
XmiI GTMKAC 1 cut(s) 633
XmnI GAANNNNTTC 1 cut(s) 384
ZraI GACGTC 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.