Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

19395650 .. 19396630

Gene Structure 981 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g25040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGAACAATATCAATACAAAGCTGATCCTTCTCCACCCTTACATCCAAAAGCAAGGAAGCTCTAACCGCCTATGGCTTCTGGCCTTCATGTCACTATTCACACTCGCCTTCCTCCTCACAATCGTCTACACAAGCGGCTTATACGCGTACTCATCCACCAGCACCACTACAACAACCACAATCCCCGCCCCCACAATAACTGCCACTAATAACGCCGCTCCACAGCTGCCCACCACGGTCATCAACACCCTCCTCCACTACGCATCAAAATCCAACGACACGTTCAAAATGTCGTACGCAGACATCAAACCCATCTCTGACGCGCTCCGAAAATGCTCCACCCCATGTAACTTCCTCATTTTCGGACTCACCCATGAAACCCTACTCTGGAAAGCCCTAAACAACAATGGTCGCACCGTCTACATCGACGAGAACAGGTACTACGCCGCCTACATGGAGGAGAAGCACCCTGAAATCGATGCCTACGACGTGCAGTACACGACGAAGCTGAAGGAAACGGAGGAGCTGATCGCCGTGGCAAAAGAGCAAATACGCAACGAGTGCCGGCCGGTGCAGAACCTGCTTTTCTCCGAATGCAAGCTGGGGATCAACGACCTGCCGAACCACGTGTACGAGGTCGAATGGGACGTGATCTTGGTGGACGGGCCCAGCAGCGGGTGGCCGGACGCGCCAGGGAGAGTGATGTCCATATTCACGTCGGGGGTGCTGGCGAGGAGCAAGAAGGGCGGGAACGGGAAGACGCACGTGTTTGTGCATGACTTTGGTGGGACGGAGGTGATGGTTGTTGGGAACGAATTTTTGTGTCGGGAGAATTTGGTGGAGGCGACGGAGACGATGGGACATTACGTGGTGGAGAGAATGGACGAGAGTAGCTTCCAGTTCTGTCGCAACCAAACGACGTCGGTTTCGTCAGCAGCAAAGAATTCTTCTGCTTCTTCTTCTTCAGCATCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

327

Amino Acids

36.25

Weight (kDa)

6.08

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	102 - 290	2.7e-73	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	926
Acc36I	ACCTGC	2 cut(s)	591, 627
AccBSI	CCGCTC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	129, 423
AccII	CGCG	3 cut(s)	149, 326, 692
AciI	CCGC	7 cut(s)	70, 138, 189, 219, 450, 678, 750
AclWI	GGATC	2 cut(s)	22, 617
AcoI	YGGCCR	2 cut(s)	569, 683
AcsI	RAATTY	3 cut(s)	818, 835, 946
AcuI	CTGAAG	2 cut(s)	533, 951
AcvI	CACGTG	2 cut(s)	631, 769
AcyI	GRCGYC	1 cut(s)	923
AfaI	GTAC	5 cut(s)	152, 299, 443, 500, 635
AfiI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
AflIII	ACRYGT	4 cut(s)	147, 282, 630, 768
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	3 cut(s)	493, 652, 720
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	7 cut(s)	25, 63, 229, 511, 529, 604, 897
AluI	AGCT	7 cut(s)	25, 63, 229, 511, 529, 604, 897
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	22, 617
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	4 cut(s)	84, 569, 668, 683
ApaI	GGGCCC	1 cut(s)	672
ApeKI	GCWGC	3 cut(s)	229, 675, 938
ApoI	RAATTY	3 cut(s)	818, 835, 946
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AspLEI	GCGC	2 cut(s)	328, 694
AspS9I	GGNCC	2 cut(s)	668, 669
AsuHPI	GGTGA	2 cut(s)	364, 811
BaeGI	GKGCMC	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	672
BbrPI	CACGTG	2 cut(s)	631, 769
BbsI	GAAGAC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	216, 687, 950
BccI	CCATC	3 cut(s)	323, 796, 853
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	848
BfuAI	ACCTGC	2 cut(s)	591, 627
BisI	GCNGC	6 cut(s)	139, 219, 230, 450, 676, 939
BlsI	GCNGC	6 cut(s)	140, 220, 231, 451, 677, 940
Bme1390I	CCNGG	1 cut(s)	696
BmgBI	CACGTC	3 cut(s)	493, 652, 720
BmgT120I	GGNCC	2 cut(s)	668, 669
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	1 cut(s)	696
BmsI	GCATC	2 cut(s)	275, 472
BpiI	GAAGAC	1 cut(s)	767
Bsa29I	ATCGAT	1 cut(s)	480
BsaAI	YACGTR	3 cut(s)	631, 769, 871
BsaHI	GRCGYC	1 cut(s)	923
BsaJI	CCNNGG	3 cut(s)	237, 537, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 677, 678
Bse118I	RCCGGY	2 cut(s)	567, 571
Bse1I	ACTGG	1 cut(s)	901
BseBI	CCWGG	1 cut(s)	696
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	237, 537, 695
BseGI	GGATG	2 cut(s)	45, 155
BseLI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	5 cut(s)	107, 245, 476, 539, 751
BseSI	GKGCMC	1 cut(s)	672
BseX3I	CGGCCG	1 cut(s)	569
BseXI	GCAGC	3 cut(s)	216, 687, 950
BseYI	CCCAGC	2 cut(s)	604, 671
BsgI	GTGCAG	2 cut(s)	515, 596
Bsh1236I	CGCG	3 cut(s)	149, 326, 692
Bsh1285I	CGRYCG	1 cut(s)	572
BshFI	GGCC	4 cut(s)	86, 571, 670, 685
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	568, 572, 686
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	3 cut(s)	662, 805, 876
BslI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
BsmAI	GTCTC	1 cut(s)	848
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	3 cut(s)	662, 805, 876
BsmI	GAATGC	1 cut(s)	602
BsnI	GGCC	4 cut(s)	86, 571, 670, 685
Bsp120I	GGGCCC	1 cut(s)	668
Bsp1286I	GDGCHC	1 cut(s)	672
Bsp143I	GATC	4 cut(s)	27, 531, 609, 654
BspACI	CCGC	7 cut(s)	70, 138, 189, 219, 450, 678, 750
BspANI	GGCC	4 cut(s)	86, 571, 670, 685
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	3 cut(s)	149, 326, 692
BspLI	GGNNCC	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	591, 627
BspPI	GGATC	2 cut(s)	22, 617
BsrBI	CCGCTC	1 cut(s)	221
BsrFI	RCCGGY	2 cut(s)	567, 571
BsrI	ACTGG	1 cut(s)	901
BssAI	RCCGGY	2 cut(s)	567, 571
BssECI	CCNNGG	3 cut(s)	237, 537, 695
BssMI	GATC	4 cut(s)	27, 531, 609, 654
BssNI	GRCGYC	1 cut(s)	923
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	241, 421
BstACI	GRCGYC	1 cut(s)	923
BstAPI	GCANNNNNTGC	2 cut(s)	564, 583
BstBAI	YACGTR	3 cut(s)	631, 769, 871
BstC8I	GCNNGC	3 cut(s)	569, 602, 732
BstDSI	CCRYGG	2 cut(s)	237, 537
BstF5I	GGATG	2 cut(s)	45, 155
BstFNI	CGCG	3 cut(s)	149, 326, 692
BstHHI	GCGC	2 cut(s)	328, 694
BstKTI	GATC	4 cut(s)	30, 534, 612, 657
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	4 cut(s)	27, 531, 609, 654
BstMCI	CGRYCG	1 cut(s)	572
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 691, 747
BstNI	CCWGG	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	694
BstSLI	GKGCMC	1 cut(s)	672
BstUI	CGCG	3 cut(s)	149, 326, 692
BstV1I	GCAGC	3 cut(s)	216, 687, 950
BstV2I	GAAGAC	1 cut(s)	767
BstZI	CGGCCG	1 cut(s)	569
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	86, 571, 670, 685
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	2 cut(s)	237, 537
BtrI	CACGTC	3 cut(s)	493, 652, 720
BtsCI	GGATG	2 cut(s)	45, 155
BveI	ACCTGC	2 cut(s)	591, 627
Cac8I	GCNNGC	3 cut(s)	569, 602, 732
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	2 cut(s)	328, 694
Cfr10I	RCCGGY	2 cut(s)	567, 571
Cfr13I	GGNCC	2 cut(s)	668, 669
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	3 cut(s)	332, 698, 772
Csp6I	GTAC	5 cut(s)	151, 298, 442, 499, 634
CviAII	CATG	5 cut(s)	91, 348, 377, 457, 779
CviQI	GTAC	5 cut(s)	151, 298, 442, 499, 634
DpnI	GATC	4 cut(s)	29, 533, 611, 656
DpnII	GATC	4 cut(s)	27, 531, 609, 654
EaeI	YGGCCR	2 cut(s)	569, 683
EagI	CGGCCG	1 cut(s)	569
EclXI	CGGCCG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	672
Eco52I	CGGCCG	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	533, 951
Eco72I	CACGTG	2 cut(s)	631, 769
EcoRI	GAATTC	1 cut(s)	946
EcoRII	CCWGG	1 cut(s)	694
EcoT38I	GRGCYC	1 cut(s)	672
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	5 cut(s)	94, 351, 380, 460, 782
FaiI	YATR	8 cut(s)	76, 92, 145, 349, 378, 458, 713, 780
FaqI	GGGAC	3 cut(s)	662, 805, 876
FatI	CATG	5 cut(s)	90, 347, 376, 456, 778
FauI	CCCGC	3 cut(s)	196, 671, 743
FblI	GTMKAC	2 cut(s)	129, 423
Fnu4HI	GCNGC	6 cut(s)	139, 219, 230, 450, 676, 939
FokI	GGATG	2 cut(s)	32, 142
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	6 cut(s)	139, 219, 230, 450, 676, 939
GlaI	GCGC	2 cut(s)	327, 693
GluI	GCNGC	6 cut(s)	139, 219, 230, 450, 676, 939
GsaI	CCCAGC	2 cut(s)	608, 675
HaeIII	GGCC	4 cut(s)	86, 571, 670, 685
HapII	CCGG	3 cut(s)	568, 572, 686
HgaI	GACGC	3 cut(s)	332, 698, 772
HhaI	GCGC	2 cut(s)	328, 694
Hin1I	GRCGYC	1 cut(s)	923
Hin1II	CATG	5 cut(s)	94, 351, 380, 460, 782
Hin6I	GCGC	2 cut(s)	326, 692
HinP1I	GCGC	2 cut(s)	326, 692
HinfI	GANTC	1 cut(s)	369
HpaII	CCGG	3 cut(s)	568, 572, 686
HphI	GGTGA	2 cut(s)	364, 811
Hpy166II	GTNNAC	5 cut(s)	130, 424, 501, 634, 664
Hpy188I	TCNGA	4 cut(s)	322, 332, 368, 595
Hpy188III	TCNNGA	2 cut(s)	391, 830
Hpy8I	GTNNAC	5 cut(s)	130, 424, 501, 634, 664
Hpy99I	CGWCG	7 cut(s)	434, 494, 508, 724, 853, 925, 928
HpyAV	CCTTC	5 cut(s)	41, 97, 121, 508, 739
HpyCH4III	ACNGT	2 cut(s)	241, 421
HpyCH4IV	ACGT	8 cut(s)	284, 492, 630, 651, 719, 768, 870, 923
HpyCH4V	TGCA	4 cut(s)	496, 577, 600, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 691, 747
HpySE526I	ACGT	8 cut(s)	284, 492, 630, 651, 719, 768, 870, 923
Hsp92I	GRCGYC	1 cut(s)	923
Hsp92II	CATG	5 cut(s)	94, 351, 380, 460, 782
HspAI	GCGC	2 cut(s)	326, 692
KroI	GCCGGC	1 cut(s)	567
KroNI	GCCGGC	1 cut(s)	569
Kzo9I	GATC	4 cut(s)	27, 531, 609, 654
LmnI	GCTCC	5 cut(s)	226, 333, 344, 526, 738
Lsp1109I	GCAGC	3 cut(s)	216, 687, 950
LweI	GCATC	2 cut(s)	275, 472
MaeII	ACGT	8 cut(s)	284, 492, 630, 651, 719, 768, 870, 923
MaeIII	GTNAC	2 cut(s)	93, 350
MalI	GATC	4 cut(s)	29, 533, 611, 656
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	4 cut(s)	27, 531, 609, 654
MboII	GAAGA	6 cut(s)	16, 772, 942, 951, 954, 957
MhlI	GDGCHC	1 cut(s)	672
MluCI	AATT	3 cut(s)	818, 835, 946
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	300
MroNI	GCCGGC	1 cut(s)	567
MseI	TTAA	1 cut(s)	979
MspA1I	CMGCKG	2 cut(s)	229, 678
MspI	CCGG	3 cut(s)	568, 572, 686
MspR9I	CCNGG	1 cut(s)	696
Mva1269I	GAATGC	1 cut(s)	602
MvaI	CCWGG	1 cut(s)	696
MvnI	CGCG	3 cut(s)	149, 326, 692
MwoI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 691, 747
NaeI	GCCGGC	1 cut(s)	569
NdeII	GATC	4 cut(s)	27, 531, 609, 654
NgoMIV	GCCGGC	1 cut(s)	567
NlaIII	CATG	5 cut(s)	94, 351, 380, 460, 782
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	93
PcsI	WCGNNNNNNNCGW	3 cut(s)	486, 648, 929
PctI	GAATGC	1 cut(s)	602
PdiI	GCCGGC	1 cut(s)	569
Pfl23II	CGTACG	1 cut(s)	297
PkrI	GCNGC	6 cut(s)	140, 220, 231, 451, 677, 940
PleI	GAGTC	1 cut(s)	363
PmaCI	CACGTG	2 cut(s)	631, 769
PmlI	CACGTG	2 cut(s)	631, 769
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	3 cut(s)	631, 769, 871
Psp6I	CCWGG	1 cut(s)	694
PspCI	CACGTG	2 cut(s)	631, 769
PspFI	CCCAGC	2 cut(s)	604, 671
PspGI	CCWGG	1 cut(s)	694
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	670
PspOMI	GGGCCC	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	668, 669
PsrI	GAACNNNNNNTAC	4 cut(s)	428, 460, 617, 649
PstNI	CAGNNNCTG	1 cut(s)	583
PvuII	CAGCTG	1 cut(s)	229
RsaI	GTAC	5 cut(s)	152, 299, 443, 500, 635
RsaNI	GTAC	5 cut(s)	151, 298, 442, 499, 634
SaqAI	TTAA	1 cut(s)	979
SatI	GCNGC	6 cut(s)	139, 219, 230, 450, 676, 939
Sau3AI	GATC	4 cut(s)	27, 531, 609, 654
Sau96I	GGNCC	2 cut(s)	668, 669
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	1 cut(s)	696
SduI	GDGCHC	1 cut(s)	672
SfaNI	GCATC	2 cut(s)	275, 472
Sse9I	AATT	3 cut(s)	818, 835, 946
SsiI	CCGC	7 cut(s)	70, 138, 189, 219, 450, 678, 750
StyD4I	CCNGG	1 cut(s)	694
TaaI	ACNGT	2 cut(s)	241, 421
TaiI	ACGT	8 cut(s)	287, 495, 633, 654, 722, 771, 873, 926
TaqI	TCGA	3 cut(s)	429, 480, 642
TasI	AATT	3 cut(s)	818, 835, 946
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	3 cut(s)	141, 221, 452
Tru1I	TTAA	1 cut(s)	979
Tru9I	TTAA	1 cut(s)	979
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	3 cut(s)	229, 675, 938
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	17, 79, 393
TspGWI	ACGGA	3 cut(s)	536, 809, 866
XapI	RAATTY	3 cut(s)	818, 835, 946
XmiI	GTMKAC	2 cut(s)	129, 423
ZraI	GACGTC	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.