Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Reverse (-)

23375640 .. 23377423

Gene Structure 1784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G230900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGAAGAACATCAGCAACACAAAGCTGATCCTTCTCCACCCCTACATCCAGAAACAAGGAACCTCCAACCGCCTCTGGCTTCTAGCCTTCATGTCCATCTTCACACTCGCCTTCCTTCTCACAATCATTTACACAAGCGGCTTGTACGCATACTCATCAACCACAACAACCACCATCTCCGCCGCCACAATAACCACCACAACAACCGCCTCCACCGCCGTCCCCCAGCTCCCCACCACCGTCATCAACACCCTCCTCTACTACTCCGCCAAATCCAACGACACATTCAAAATGTCGTACGCCGACATCAAGCCCATCTCGGACGCCCTCCGGAAATGCTCAACCCCCTGCAACTTCCTCATCTTCGGCCTCACCCACGAGACCCTCCTCTGGAAGGCCCTCAACAACAACGGCCGCACCGTCTTCATCGATGAAAACCGCTACTTCGCCGCCTACATGGAGGAGAAGCACCCGGAAATCGACGCGTACGACGTGCAGTACACAACAAAATCGAAAGAGCTCAAGGAGCTGGTGGCGGTGGCAAAAGAGCAAATACGGAACGAGTGCAGGCCGGTGCAGAACCTGCTGTTCTCGGAGTGCAAGCTCGGGATCAACGACCTGCCGAACCACGTGTACGAGGTTGATTGGGACGTCATCTTGGTGGACGGGCCACGTGGCGACTGGCCGGACGCGCCCGGGCGGGTGATGCCGATATTCACGTCGGGGGTGCTGGCGAGGAGCAAAAAGGGCGGGAACGGGAAGACGCACGTGTTCGTGCATGATTTTGGCGGGGAGGTGCAGAGGGTCTGCGGGGAGGAGTTTTTGTGCAGGGAGAATTTGGTGGAGGCGAGTGAGACGCTGGGGCATTATGTGGTCGAGAGGATGGAGGAGAGTAGCTTCCAGTTCTGTCGCAGCCGTCCATCGTCAAATTCTTCATTATCAGCAGCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

318

Amino Acids

35.55

Weight (kDa)

6.4

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	654
Acc36I	ACCTGC	2 cut(s)	591, 627
AccII	CGCG	2 cut(s)	485, 692
AccIII	TCCGGA	1 cut(s)	330
AclWI	GGATC	2 cut(s)	22, 617
AcoI	YGGCCR	2 cut(s)	412, 683
AcsI	RAATTY	2 cut(s)	835, 928
AcvI	CACGTG	3 cut(s)	631, 674, 769
AcyI	GRCGYC	2 cut(s)	324, 651
AfaI	GTAC	5 cut(s)	146, 299, 488, 500, 635
AfiI	CCNNNNNNNGG	2 cut(s)	390, 394
AflIII	ACRYGT	3 cut(s)	483, 630, 768
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	2 cut(s)	493, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	6 cut(s)	25, 229, 520, 529, 604, 897
AluI	AGCT	6 cut(s)	25, 229, 520, 529, 604, 897
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	2 cut(s)	374, 848
AlwI	GGATC	2 cut(s)	22, 617
AlwNI	CAGNNNCTG	1 cut(s)	583
Ama87I	CYCGRG	2 cut(s)	605, 695
Aor13HI	TCCGGA	1 cut(s)	330
AoxI	GGCC	6 cut(s)	367, 396, 412, 569, 668, 683
ApeKI	GCWGC	2 cut(s)	912, 944
ApoI	RAATTY	2 cut(s)	835, 928
AspLEI	GCGC	1 cut(s)	694
AspS9I	GGNCC	2 cut(s)	397, 668
AsuC2I	CCSGG	3 cut(s)	473, 696, 697
AsuHPI	GGTGA	2 cut(s)	364, 715
AvaI	CYCGRG	2 cut(s)	605, 695
BanII	GRGCYC	1 cut(s)	522
BauI	CACGAG	1 cut(s)	377
BbrPI	CACGTG	3 cut(s)	631, 674, 769
BbsI	GAAGAC	2 cut(s)	415, 767
Bbv12I	GWGCWC	1 cut(s)	522
BbvI	GCAGC	1 cut(s)	924
BccI	CCATC	5 cut(s)	104, 182, 323, 877, 928
BceAI	ACGGC	3 cut(s)	203, 427, 900
BcnI	CCSGG	3 cut(s)	473, 696, 697
BcoDI	GTCTC	2 cut(s)	374, 848
BfaI	CTAG	1 cut(s)	83
BfuAI	ACCTGC	2 cut(s)	591, 627
BisI	GCNGC	6 cut(s)	139, 183, 415, 450, 913, 945
BlsI	GCNGC	6 cut(s)	140, 184, 416, 451, 914, 946
Bme1390I	CCNGG	3 cut(s)	473, 696, 697
BmeT110I	CYCGRG	2 cut(s)	605, 695
BmgBI	CACGTC	2 cut(s)	493, 720
BmgT120I	GGNCC	2 cut(s)	397, 668
BmiI	GGNNCC	1 cut(s)	61
BmrFI	CCNGG	3 cut(s)	473, 696, 697
BmsI	GCATC	1 cut(s)	696
BpiI	GAAGAC	2 cut(s)	415, 767
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	3 cut(s)	473, 696, 697
Bsa29I	ATCGAT	1 cut(s)	429
BsaAI	YACGTR	3 cut(s)	631, 674, 769
BsaHI	GRCGYC	2 cut(s)	324, 651
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	1 cut(s)	695
BsaWI	WCCGGW	1 cut(s)	330
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 394
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	2 cut(s)	686, 901
BseAI	TCCGGA	1 cut(s)	330
BseCI	ATCGAT	1 cut(s)	429
BseDI	CCNNGG	1 cut(s)	695
BseGI	GGATG	2 cut(s)	45, 888
BseLI	CCNNNNNNNGG	2 cut(s)	390, 394
BseNI	ACTGG	2 cut(s)	686, 901
BseRI	GAGGAG	6 cut(s)	245, 377, 476, 751, 830, 902
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	924
BseYI	CCCAGC	2 cut(s)	225, 859
BsgI	GTGCAG	5 cut(s)	515, 586, 596, 818, 847
Bsh1236I	CGCG	2 cut(s)	485, 692
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	6 cut(s)	369, 398, 414, 571, 670, 685
BshVI	ATCGAT	1 cut(s)	429
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	522
BsiHKCI	CYCGRG	2 cut(s)	605, 695
BsiSI	CCGG	5 cut(s)	331, 473, 572, 686, 696
BsiWI	CGTACG	2 cut(s)	297, 486
BslFI	GGGAC	2 cut(s)	206, 662
BslI	CCNNNNNNNGG	2 cut(s)	390, 394
BsmAI	GTCTC	2 cut(s)	374, 848
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	2 cut(s)	206, 662
BsnI	GGCC	6 cut(s)	369, 398, 414, 571, 670, 685
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	2 cut(s)	605, 695
Bsp1286I	GDGCHC	1 cut(s)	522
Bsp13I	TCCGGA	1 cut(s)	330
Bsp143I	GATC	2 cut(s)	27, 609
BspANI	GGCC	6 cut(s)	369, 398, 414, 571, 670, 685
BspDI	ATCGAT	1 cut(s)	429
BspEI	TCCGGA	1 cut(s)	330
BspFNI	CGCG	2 cut(s)	485, 692
BspLI	GGNNCC	1 cut(s)	61
BspMI	ACCTGC	2 cut(s)	591, 627
BspPI	GGATC	2 cut(s)	22, 617
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	2 cut(s)	686, 901
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	695
BssMI	GATC	2 cut(s)	27, 609
BssNI	GRCGYC	2 cut(s)	324, 651
BssSI	CACGAG	1 cut(s)	377
Bst2BI	CACGAG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	241, 421
BstACI	GRCGYC	2 cut(s)	324, 651
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstBAI	YACGTR	3 cut(s)	631, 674, 769
BstC8I	GCNNGC	3 cut(s)	569, 602, 732
BstDEI	CTNAG	1 cut(s)	951
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	45, 888
BstFNI	CGCG	2 cut(s)	485, 692
BstHHI	GCGC	1 cut(s)	694
BstKTI	GATC	2 cut(s)	30, 612
BstMAI	GTCTC	2 cut(s)	374, 848
BstMBI	GATC	2 cut(s)	27, 609
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 526, 583, 691, 706, 747
BstSCI	CCNGG	3 cut(s)	471, 694, 695
BstUI	CGCG	2 cut(s)	485, 692
BstV1I	GCAGC	1 cut(s)	924
BstV2I	GAAGAC	2 cut(s)	415, 767
BstZI	CGGCCG	1 cut(s)	412
Bsu15I	ATCGAT	1 cut(s)	429
BsuRI	GGCC	6 cut(s)	369, 398, 414, 571, 670, 685
BsuTUI	ATCGAT	1 cut(s)	429
BtrI	CACGTC	2 cut(s)	493, 720
BtsCI	GGATG	2 cut(s)	45, 888
BveI	ACCTGC	2 cut(s)	591, 627
Cac8I	GCNNGC	3 cut(s)	569, 602, 732
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	2 cut(s)	397, 668
Cfr9I	CCCGGG	1 cut(s)	695
ClaI	ATCGAT	1 cut(s)	429
CseI	GACGC	5 cut(s)	332, 491, 698, 772, 865
Csp6I	GTAC	5 cut(s)	145, 298, 487, 499, 634
CviAII	CATG	3 cut(s)	91, 457, 779
CviQI	GTAC	5 cut(s)	145, 298, 487, 499, 634
DdeI	CTNAG	1 cut(s)	951
DpnI	GATC	2 cut(s)	29, 611
DpnII	GATC	2 cut(s)	27, 609
EaeI	YGGCCR	2 cut(s)	412, 683
EagI	CGGCCG	1 cut(s)	412
EciI	GGCGGA	2 cut(s)	169, 256
Ecl136II	GAGCTC	1 cut(s)	520
EclXI	CGGCCG	1 cut(s)	412
Eco24I	GRGCYC	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	374
Eco52I	CGGCCG	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	520
Eco72I	CACGTG	3 cut(s)	631, 674, 769
Eco88I	CYCGRG	2 cut(s)	605, 695
EcoICRI	GAGCTC	1 cut(s)	520
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT38I	GRGCYC	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	3 cut(s)	94, 460, 782
FaiI	YATR	5 cut(s)	92, 151, 458, 780, 870
FaqI	GGGAC	2 cut(s)	206, 662
FatI	CATG	3 cut(s)	90, 456, 778
FauI	CCCGC	4 cut(s)	693, 743, 782, 803
Fnu4HI	GCNGC	6 cut(s)	139, 183, 415, 450, 913, 945
FokI	GGATG	2 cut(s)	32, 895
FriOI	GRGCYC	1 cut(s)	522
Fsp4HI	GCNGC	6 cut(s)	139, 183, 415, 450, 913, 945
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	693
GluI	GCNGC	6 cut(s)	139, 183, 415, 450, 913, 945
GsaI	CCCAGC	2 cut(s)	229, 863
HaeIII	GGCC	6 cut(s)	369, 398, 414, 571, 670, 685
HapII	CCGG	5 cut(s)	331, 473, 572, 686, 696
HgaI	GACGC	5 cut(s)	332, 491, 698, 772, 865
HhaI	GCGC	1 cut(s)	694
Hin1I	GRCGYC	2 cut(s)	324, 651
Hin1II	CATG	3 cut(s)	94, 460, 782
Hin6I	GCGC	1 cut(s)	692
HinP1I	GCGC	1 cut(s)	692
HpaII	CCGG	5 cut(s)	331, 473, 572, 686, 696
HphI	GGTGA	2 cut(s)	364, 715
Hpy166II	GTNNAC	3 cut(s)	501, 634, 664
Hpy188I	TCNGA	2 cut(s)	322, 595
Hpy188III	TCNNGA	5 cut(s)	49, 331, 391, 607, 877
Hpy8I	GTNNAC	3 cut(s)	501, 634, 664
Hpy99I	CGWCG	3 cut(s)	485, 494, 724
HpyAV	CCTTC	5 cut(s)	41, 97, 121, 125, 388
HpyCH4III	ACNGT	2 cut(s)	241, 421
HpyCH4IV	ACGT	6 cut(s)	492, 630, 651, 673, 719, 768
HpyCH4V	TGCA	8 cut(s)	351, 496, 567, 577, 600, 778, 799, 828
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 526, 583, 691, 706, 747
HpyF3I	CTNAG	1 cut(s)	951
HpySE526I	ACGT	6 cut(s)	492, 630, 651, 673, 719, 768
Hsp92I	GRCGYC	2 cut(s)	324, 651
Hsp92II	CATG	3 cut(s)	94, 460, 782
HspAI	GCGC	1 cut(s)	692
Kpn2I	TCCGGA	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	27, 609
LmnI	GCTCC	3 cut(s)	234, 526, 738
Lsp1109I	GCAGC	1 cut(s)	924
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	6 cut(s)	492, 630, 651, 673, 719, 768
MalI	GATC	2 cut(s)	29, 611
MboI	GATC	2 cut(s)	27, 609
MboII	GAAGA	6 cut(s)	16, 91, 355, 415, 772, 924
MhlI	GDGCHC	1 cut(s)	522
MluCI	AATT	2 cut(s)	835, 928
MluI	ACGCGT	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	90, 300
MroI	TCCGGA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	659
MspI	CCGG	5 cut(s)	331, 473, 572, 686, 696
MspR9I	CCNGG	3 cut(s)	473, 696, 697
MvnI	CGCG	2 cut(s)	485, 692
MwoI	GCNNNNNNNGC	6 cut(s)	215, 526, 583, 691, 706, 747
NciI	CCSGG	3 cut(s)	473, 696, 697
NdeII	GATC	2 cut(s)	27, 609
NlaIII	CATG	3 cut(s)	94, 460, 782
NlaIV	GGNNCC	1 cut(s)	61
PcsI	WCGNNNNNNNCGW	4 cut(s)	417, 486, 489, 612
Pfl23II	CGTACG	2 cut(s)	297, 486
PkrI	GCNGC	6 cut(s)	140, 184, 416, 451, 914, 946
PmaCI	CACGTG	3 cut(s)	631, 674, 769
PmlI	CACGTG	3 cut(s)	631, 674, 769
Ppu21I	YACGTR	3 cut(s)	631, 674, 769
Psp124BI	GAGCTC	1 cut(s)	522
PspCI	CACGTG	3 cut(s)	631, 674, 769
PspFI	CCCAGC	2 cut(s)	225, 859
PspLI	CGTACG	2 cut(s)	297, 486
PspN4I	GGNNCC	1 cut(s)	61
PspPI	GGNCC	2 cut(s)	397, 668
PsrI	GAACNNNNNNTAC	2 cut(s)	617, 649
PstNI	CAGNNNCTG	1 cut(s)	583
RsaI	GTAC	5 cut(s)	146, 299, 488, 500, 635
RsaNI	GTAC	5 cut(s)	145, 298, 487, 499, 634
RseI	CAYNNNNRTG	1 cut(s)	659
SacI	GAGCTC	1 cut(s)	522
SatI	GCNGC	6 cut(s)	139, 183, 415, 450, 913, 945
Sau3AI	GATC	2 cut(s)	27, 609
Sau96I	GGNCC	2 cut(s)	397, 668
ScrFI	CCNGG	3 cut(s)	473, 696, 697
SduI	GDGCHC	1 cut(s)	522
SfaNI	GCATC	1 cut(s)	696
SmaI	CCCGGG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	659
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
SrfI	GCCCGGGC	1 cut(s)	697
Sse9I	AATT	2 cut(s)	835, 928
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	522
StyD4I	CCNGG	3 cut(s)	471, 694, 695
TaaI	ACNGT	2 cut(s)	241, 421
TaiI	ACGT	6 cut(s)	495, 633, 654, 676, 722, 771
TaqI	TCGA	4 cut(s)	429, 480, 512, 876
TasI	AATT	2 cut(s)	835, 928
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	4 cut(s)	141, 185, 417, 452
TseI	GCWGC	2 cut(s)	912, 944
TspDTI	ATGAA	5 cut(s)	17, 79, 415, 447, 924
TspGWI	ACGGA	1 cut(s)	571
TspMI	CCCGGG	1 cut(s)	695
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	835, 928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	678
XmaI	CCCGGG	1 cut(s)	695
XspI	CTAG	1 cut(s)	83
ZraI	GACGTC	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.