Rh2CG190800

Polysaccharide biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014161
Physical Location & Seq
Forward (+)
17997616 .. 17998602
987 bp
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UTR
Exon/CDS
Intron
Rh2CG190800.1

Sequence Viewer

Length: 987 bp
ATGAAGAACGGCAACACCAAGCTGATTCTTCTCCACCCTTACATCCAAAAACAAGGCAGCTCCAACCGGCTATGGCTTCTCACCTTCATGTCCTTGTCCACCCTCGCCTTTCTCCTCACAATCATTTACACCAGCGGATTGTATGCATATTCGACAGCAACTACAACCACCACCACAACCGCCAATATAGCCGCCGCCACTATAACCGCCACCAACGCCCCAATGCCGACCACCGTGATCAACACGCTCCTCCACTACGCGTCGAAATCAAACGACACGTTCAAAATGTCATACTCCGAGATCAAACCCATCTCGGACGTACTGAGAAAATGCTCCTCCCCTTGTAACTTCCTGATCTTCGGCCTCACCCACGAGACCCTTCTCTGGAAAGCCCTAAACCACAACGGCCGGACCGTCTTCATCGACGAGAACCGCTACTACGCCGCCTACATGGAAGAAAAGCACCCGGAAATCGACGCCTACGACGTTCAATACACCACCAAGACTAGAGAGATGTCCGAGTTGATCAAAGTCGCCAAAGAACAGATCAGAAACGAGTGCCGGCCGGTTCAGAATCTGTTGTTCTCGGAATGCAAGCTCGGAATCAATGATCTTCCGAACCATGTCTACGAAGTCGACTGGGACGTGATCTTGATCGACGGGCCCAGAGGAGACTGGCCCGACTCGCCGGGCCGCATCTCTCCCATTTTCACCTCCGGCGTTCTGGCCCGGAGCAAAAAGGGCGGGAGCGGGAAGACACACGTGTTCGTTCATGACTTCAGGAGGGACGTGGAGAGGGTCTGTGGGGATGAGTTTCTGTGCAGAGAAAATTTGGTGGAGGAGAGTGAGACGCTGGGGCATTATGTGATGGAGAGGATGGAGGAGACCAGCTTCCAGTTCTGCCGCAACAACAACCGTGAAGTGACGTCATCAACGTCGGCGGCGGCAAATAATTCTTCTTCTTCTTCTTCGTCCTTGTCTCAGTAA

Protein Analysis

328

Amino Acids

36.96

Weight (kDa)

6.32

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IRX15_IRX15L_GXM PF21729 100 - 288 1.4e-81 IRX15/IRX15L/GXM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G50220 AT5G67210
fragaria_vesca FvH4_1g16440
malus_domestica MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica Prupe.6G230900_v2.0.a1
pyrus_communis pycom02g14310 pycom15g25040
rosa_chinensis RchiOBHm_Chr2g0106321
rosa_laevigata RLG00000017488
rosa_roxburghii Rroxscaffold_2G00137280
rosa_rugosa Rorug02G0134600
rosa_samantha Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana Rw2G014480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 929
AccBSI CCGCTC 1 cut(s) 750
AccI GTMKAC 2 cut(s) 627, 636
AccII CGCG 1 cut(s) 260
AcoI YGGCCR 2 cut(s) 406, 563
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 1 cut(s) 763
AcvI CACGTG 1 cut(s) 763
AcyI GRCGYC 2 cut(s) 477, 926
AfaI GTAC 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 384
AflIII ACRYGT 4 cut(s) 258, 276, 760, 762
AgsI TTSAA 2 cut(s) 283, 491
AjiI CACGTC 2 cut(s) 646, 790
AluBI AGCT 4 cut(s) 22, 60, 598, 891
AluI AGCT 4 cut(s) 22, 60, 598, 891
Alw26I GTCTC 4 cut(s) 368, 666, 842, 878
AlwNI CAGNNNCTG 1 cut(s) 577
AoxI GGCC 7 cut(s) 361, 406, 563, 662, 677, 691, 726
ApaI GGGCCC 1 cut(s) 666
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 829
AspS9I GGNCC 6 cut(s) 411, 662, 663, 678, 691, 727
AsuC2I CCSGG 3 cut(s) 467, 690, 730
AsuHPI GGTGA 3 cut(s) 73, 358, 703
AvaII GGWCC 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 666
BanII GRGCYC 1 cut(s) 666
BauI CACGAG 1 cut(s) 371
BbrPI CACGTG 1 cut(s) 763
BbsI GAAGAC 2 cut(s) 409, 761
BbvI GCAGC 1 cut(s) 69
BccI CCATC 3 cut(s) 317, 862, 871
BceAI ACGGC 2 cut(s) 25, 421
BclI TGATCA 2 cut(s) 237, 525
BcnI CCSGG 3 cut(s) 467, 690, 730
BcoDI GTCTC 4 cut(s) 368, 666, 842, 878
BfaI CTAG 1 cut(s) 507
BisI GCNGC 8 cut(s) 58, 192, 195, 444, 694, 904, 942, 945
BlsI GCNGC 8 cut(s) 59, 193, 196, 445, 695, 905, 943, 946
Bme1390I CCNGG 3 cut(s) 467, 690, 730
Bme18I GGWCC 1 cut(s) 411
BmgBI CACGTC 2 cut(s) 646, 790
BmgT120I GGNCC 6 cut(s) 411, 662, 663, 678, 691, 727
BmiI GGNNCC 1 cut(s) 664
BmrFI CCNGG 3 cut(s) 467, 690, 730
BmrI ACTGGG 1 cut(s) 649
BmsI GCATC 1 cut(s) 705
BmuI ACTGGG 1 cut(s) 649
BpiI GAAGAC 2 cut(s) 409, 761
BpuMI CCSGG 3 cut(s) 467, 690, 730
BsaAI YACGTR 1 cut(s) 763
BsaBI GATNNNNATC 1 cut(s) 653
BsaHI GRCGYC 2 cut(s) 477, 926
BsaI GGTCTC 2 cut(s) 368, 878
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse118I RCCGGY 3 cut(s) 66, 561, 565
Bse1I ACTGG 3 cut(s) 644, 680, 895
Bse8I GATNNNNATC 1 cut(s) 653
BseGI GGATG 3 cut(s) 42, 814, 882
BseJI GATNNNNATC 1 cut(s) 653
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 3 cut(s) 644, 680, 895
BseRI GAGGAG 6 cut(s) 104, 239, 325, 684, 854, 896
BseSI GKGCMC 1 cut(s) 666
BseX3I CGGCCG 2 cut(s) 406, 563
BseXI GCAGC 1 cut(s) 69
BseYI CCCAGC 1 cut(s) 853
BsgI GTGCAG 1 cut(s) 841
Bsh1236I CGCG 1 cut(s) 260
Bsh1285I CGRYCG 2 cut(s) 409, 566
BshFI GGCC 7 cut(s) 363, 408, 565, 664, 679, 693, 728
BsiEI CGRYCG 2 cut(s) 409, 566
BsiSI CCGG 8 cut(s) 67, 409, 467, 562, 566, 689, 717, 730
BslFI GGGAC 2 cut(s) 656, 800
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 4 cut(s) 368, 666, 842, 878
BsmBI CGTCTC 1 cut(s) 842
BsmFI GGGAC 2 cut(s) 656, 800
BsmI GAATGC 1 cut(s) 596
BsnI GGCC 7 cut(s) 363, 408, 565, 664, 679, 693, 728
Bso31I GGTCTC 2 cut(s) 368, 878
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
BspANI GGCC 7 cut(s) 363, 408, 565, 664, 679, 693, 728
BspCNI CTCAG 1 cut(s) 315
BspFNI CGCG 1 cut(s) 260
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 1 cut(s) 664
BspTNI GGTCTC 2 cut(s) 368, 878
BsrBI CCGCTC 1 cut(s) 750
BsrFI RCCGGY 3 cut(s) 66, 561, 565
BsrI ACTGG 3 cut(s) 644, 680, 895
BssAI RCCGGY 3 cut(s) 66, 561, 565
BssMI GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
BssNI GRCGYC 2 cut(s) 477, 926
BssSI CACGAG 1 cut(s) 371
Bst2BI CACGAG 1 cut(s) 371
Bst4CI ACNGT 3 cut(s) 235, 415, 917
BstACI GRCGYC 2 cut(s) 477, 926
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 563, 596
BstDEI CTNAG 2 cut(s) 323, 981
BstF5I GGATG 3 cut(s) 42, 814, 882
BstFNI CGCG 1 cut(s) 260
BstKTI GATC 8 cut(s) 240, 303, 357, 528, 549, 613, 651, 657
BstMAI GTCTC 4 cut(s) 368, 666, 842, 878
BstMBI GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
BstMCI CGRYCG 2 cut(s) 409, 566
BstMWI GCNNNNNNNGC 4 cut(s) 188, 215, 685, 741
BstSCI CCNGG 3 cut(s) 465, 688, 728
BstSLI GKGCMC 1 cut(s) 666
BstUI CGCG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 2 cut(s) 409, 761
BstZI CGGCCG 2 cut(s) 406, 563
BsuRI GGCC 7 cut(s) 363, 408, 565, 664, 679, 693, 728
BtrI CACGTC 2 cut(s) 646, 790
BtsCI GGATG 3 cut(s) 42, 814, 882
Cac8I GCNNGC 2 cut(s) 563, 596
CaiI CAGNNNCTG 1 cut(s) 577
CciI TCATGA 1 cut(s) 772
Cfr10I RCCGGY 3 cut(s) 66, 561, 565
Cfr13I GGNCC 6 cut(s) 411, 662, 663, 678, 691, 727
CpoI CGGWCCG 1 cut(s) 411
CseI GACGC 3 cut(s) 249, 485, 859
Csp6I GTAC 1 cut(s) 320
CspI CGGWCCG 1 cut(s) 411
CviAII CATG 4 cut(s) 88, 451, 623, 773
CviQI GTAC 1 cut(s) 320
DdeI CTNAG 2 cut(s) 323, 981
DpnI GATC 8 cut(s) 239, 302, 356, 527, 548, 612, 650, 656
DpnII GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
EaeI YGGCCR 2 cut(s) 406, 563
EagI CGGCCG 2 cut(s) 406, 563
EclXI CGGCCG 2 cut(s) 406, 563
Eco24I GRGCYC 1 cut(s) 666
Eco31I GGTCTC 2 cut(s) 368, 878
Eco47I GGWCC 1 cut(s) 411
Eco52I CGGCCG 2 cut(s) 406, 563
Eco57I CTGAAG 1 cut(s) 763
Eco72I CACGTG 1 cut(s) 763
EcoT22I ATGCAT 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 666
Esp3I CGTCTC 1 cut(s) 842
FaeI CATG 4 cut(s) 91, 454, 626, 776
FaqI GGGAC 2 cut(s) 656, 800
FatI CATG 4 cut(s) 87, 450, 622, 772
FauI CCCGC 2 cut(s) 737, 743
FbaI TGATCA 2 cut(s) 237, 525
FblI GTMKAC 2 cut(s) 627, 636
Fnu4HI GCNGC 8 cut(s) 58, 192, 195, 444, 694, 904, 942, 945
FokI GGATG 3 cut(s) 29, 821, 889
FriOI GRGCYC 1 cut(s) 666
Fsp4HI GCNGC 8 cut(s) 58, 192, 195, 444, 694, 904, 942, 945
FspBI CTAG 1 cut(s) 507
GluI GCNGC 8 cut(s) 58, 192, 195, 444, 694, 904, 942, 945
GsaI CCCAGC 1 cut(s) 857
HaeIII GGCC 7 cut(s) 363, 408, 565, 664, 679, 693, 728
HapII CCGG 8 cut(s) 67, 409, 467, 562, 566, 689, 717, 730
HgaI GACGC 3 cut(s) 249, 485, 859
Hin1I GRCGYC 2 cut(s) 477, 926
Hin1II CATG 4 cut(s) 91, 454, 626, 776
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 4 cut(s) 25, 574, 603, 683
HpaII CCGG 8 cut(s) 67, 409, 467, 562, 566, 689, 717, 730
HphI GGTGA 3 cut(s) 73, 358, 703
Hpy166II GTNNAC 3 cut(s) 99, 628, 637
Hpy188I TCNGA 8 cut(s) 298, 316, 520, 551, 573, 589, 602, 618
Hpy188III TCNNGA 5 cut(s) 352, 385, 652, 773, 781
Hpy8I GTNNAC 3 cut(s) 99, 628, 637
Hpy99I CGWCG 6 cut(s) 265, 428, 479, 488, 662, 940
HpyAV CCTTC 2 cut(s) 94, 389
HpyCH4III ACNGT 3 cut(s) 235, 415, 917
HpyCH4IV ACGT 8 cut(s) 278, 318, 486, 645, 762, 789, 926, 935
HpyCH4V TGCA 3 cut(s) 146, 594, 822
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 215, 685, 741
HpyF3I CTNAG 2 cut(s) 323, 981
HpySE526I ACGT 8 cut(s) 278, 318, 486, 645, 762, 789, 926, 935
Hsp92I GRCGYC 2 cut(s) 477, 926
Hsp92II CATG 4 cut(s) 91, 454, 626, 776
KroI GCCGGC 1 cut(s) 561
KroNI GCCGGC 1 cut(s) 563
Ksp22I TGATCA 2 cut(s) 237, 525
Kzo9I GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
LmnI GCTCC 5 cut(s) 65, 252, 338, 732, 747
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 1 cut(s) 705
MaeI CTAG 1 cut(s) 507
MaeII ACGT 8 cut(s) 278, 318, 486, 645, 762, 789, 926, 935
MaeIII GTNAC 2 cut(s) 344, 922
MalI GATC 8 cut(s) 239, 302, 356, 527, 548, 612, 650, 656
MbiI CCGCTC 1 cut(s) 750
MboI GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
MhlI GDGCHC 1 cut(s) 666
MluCI AATT 2 cut(s) 829, 952
MluI ACGCGT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 87
Mph1103I ATGCAT 1 cut(s) 148
MroNI GCCGGC 1 cut(s) 561
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 135
MspI CCGG 8 cut(s) 67, 409, 467, 562, 566, 689, 717, 730
MspR9I CCNGG 3 cut(s) 467, 690, 730
Mva1269I GAATGC 1 cut(s) 596
MvnI CGCG 1 cut(s) 260
MwoI GCNNNNNNNGC 4 cut(s) 188, 215, 685, 741
NaeI GCCGGC 1 cut(s) 563
NciI CCSGG 3 cut(s) 467, 690, 730
NdeII GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
NgoMIV GCCGGC 1 cut(s) 561
NlaIII CATG 4 cut(s) 91, 454, 626, 776
NlaIV GGNNCC 1 cut(s) 664
NmuCI GTSAC 1 cut(s) 922
NsiI ATGCAT 1 cut(s) 148
PagI TCATGA 1 cut(s) 772
PcsI WCGNNNNNNNCGW 5 cut(s) 411, 480, 483, 642, 932
PctI GAATGC 1 cut(s) 596
PdiI GCCGGC 1 cut(s) 563
PfeI GAWTC 3 cut(s) 25, 574, 603
PkrI GCNGC 8 cut(s) 59, 193, 196, 445, 695, 905, 943, 946
PleI GAGTC 1 cut(s) 677
PmaCI CACGTG 1 cut(s) 763
PmlI CACGTG 1 cut(s) 763
PpsI GAGTC 1 cut(s) 677
Ppu21I YACGTR 1 cut(s) 763
PspCI CACGTG 1 cut(s) 763
PspFI CCCAGC 1 cut(s) 853
PspN4I GGNNCC 1 cut(s) 664
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 6 cut(s) 411, 662, 663, 678, 691, 727
PsrI GAACNNNNNNTAC 4 cut(s) 422, 454, 611, 643
PstNI CAGNNNCTG 1 cut(s) 577
RsaI GTAC 1 cut(s) 321
RsaNI GTAC 1 cut(s) 320
RseI CAYNNNNRTG 1 cut(s) 86
Rsr2I CGGWCCG 1 cut(s) 411
RsrII CGGWCCG 1 cut(s) 411
SalI GTCGAC 1 cut(s) 635
SatI GCNGC 8 cut(s) 58, 192, 195, 444, 694, 904, 942, 945
Sau3AI GATC 8 cut(s) 237, 300, 354, 525, 546, 610, 648, 654
Sau96I GGNCC 6 cut(s) 411, 662, 663, 678, 691, 727
SchI GAGTC 1 cut(s) 677
ScrFI CCNGG 3 cut(s) 467, 690, 730
SduI GDGCHC 1 cut(s) 666
SfaNI GCATC 1 cut(s) 705
SinI GGWCC 1 cut(s) 411
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 2 cut(s) 829, 952
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 3 cut(s) 465, 688, 728
TaaI ACNGT 3 cut(s) 235, 415, 917
TaiI ACGT 8 cut(s) 281, 321, 489, 648, 765, 792, 929, 938
TaqI TCGA 6 cut(s) 152, 263, 423, 474, 636, 657
TasI AATT 2 cut(s) 829, 952
TauI GCSGC 7 cut(s) 194, 197, 446, 696, 906, 944, 947
TfiI GAWTC 3 cut(s) 25, 574, 603
TseFI GTSAC 1 cut(s) 922
TseI GCWGC 1 cut(s) 57
Tsp45I GTSAC 1 cut(s) 922
TspDTI ATGAA 4 cut(s) 17, 76, 409, 761
VpaK11BI GGWCC 1 cut(s) 411
XapI RAATTY 1 cut(s) 829
XmiI GTMKAC 2 cut(s) 627, 636
XspI CTAG 1 cut(s) 507
ZraI GACGTC 1 cut(s) 927
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.