Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

17468218 .. 17469213

Gene Structure 996 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000017488

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGAAGAACGGCAACACCAAGCTGATTCTTCTCCACCCTTACATCCAAAAACAAGGCAGCTCCAACCGGCTATGGCTTCTCACCTTCATGTCCTTGTCCACCCTCGCCTTTCTCCTCACAATCATTTACACCAGCGGATTGTATGCATATTCGACAGCAACTACAACCACCACCAATATAGCCGCCGCCGCCACAATAACCGCCACCAACGCCCCAATGCCCACCACCGTGATCAACACGCTCCTCCACTACGCGTCGAAATCAAACGACACGTTCAAAATGTCATACTCCGAGATCAAACCCATCTCGGACGTACTAAGAAAATGCTCCTCCCCTTGTAACTTCCTGATCTTCGGCCTCACCCACGAGACCCTTCTCTGGAAAGCCCTAAACCACAACGGCCGGACCGTCTTCATCGACGAGAACCGCTACTACGCCGCCTACATGGAAGAAAAGCACCCGGAAATCGACGCCTACGACGTTCAGTACACCACCAAGACTAGAGAGATGACCGAGCTGATCAAAGTCGCCAAAGAACAGATCAGAAACGAGTGCCGCCCGGTTCAGAATCTCTTGTTCTCGGAATGCAAGCTCGGAATCAATGATCTTCCGAACCATGTCTACGAAGTCGACTGGGACGTGATCTTGATCGACGGGCCCAGAGGAGACTGGCCCGACTCGCCGGGCCGGATCTCTCCCATTTTCACCTCCGGCGTTCTGGCCCGGAGCAAAAAGGGCGGGAGCGGGAAGACACACGTGTTCGTTCATGACTTCAGGAGGGACGTGGAGAGGGTCTGTGGGGATGAGTTTCTGTGCAGACAGAATTTGGTGGAGGAGAGTGAGACGCTGGGGCATTATGTGGTGGAGAGGATGGAGGAGACTAGCTTCCAGTTCTGCCGCAACAACAACCGTGAAGTGACGTCATCGTCGTCGTCGTCGGCGGCGGCAAATAATTCTTCTTCTTCTTCTTCTTCTTCTTCGTCCTTGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

332

Amino Acids

37.16

Weight (kDa)

6.51

Isoelectric Point (pI)

51.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	98 - 286	2.9e-81	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	925
AatII	GACGTC	1 cut(s)	923
AccBSI	CCGCTC	1 cut(s)	744
AccI	GTMKAC	2 cut(s)	621, 630
AccII	CGCG	1 cut(s)	254
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	1 cut(s)	757
AcvI	CACGTG	1 cut(s)	757
AcyI	GRCGYC	2 cut(s)	471, 920
AfaI	GTAC	2 cut(s)	315, 488
AfiI	CCNNNNNNNGG	1 cut(s)	378
AflIII	ACRYGT	4 cut(s)	252, 270, 754, 756
AgsI	TTSAA	1 cut(s)	277
AjiI	CACGTC	2 cut(s)	640, 784
AleI	CACNNNNGTG	1 cut(s)	227
AluBI	AGCT	5 cut(s)	22, 60, 517, 592, 885
AluI	AGCT	5 cut(s)	22, 60, 517, 592, 885
Alw26I	GTCTC	4 cut(s)	362, 660, 836, 872
AlwI	GGATC	1 cut(s)	698
AoxI	GGCC	6 cut(s)	355, 400, 656, 671, 685, 720
ApaI	GGGCCC	1 cut(s)	660
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	823
AspS9I	GGNCC	6 cut(s)	405, 656, 657, 672, 685, 721
AsuC2I	CCSGG	4 cut(s)	461, 560, 684, 724
AsuHPI	GGTGA	3 cut(s)	73, 352, 697
AvaII	GGWCC	1 cut(s)	405
BaeGI	GKGCMC	1 cut(s)	660
BanII	GRGCYC	1 cut(s)	660
BauI	CACGAG	1 cut(s)	365
BbrPI	CACGTG	1 cut(s)	757
BbsI	GAAGAC	2 cut(s)	403, 755
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	311, 865
BceAI	ACGGC	2 cut(s)	25, 415
BclI	TGATCA	2 cut(s)	231, 519
BcnI	CCSGG	4 cut(s)	461, 560, 684, 724
BcoDI	GTCTC	4 cut(s)	362, 660, 836, 872
BfaI	CTAG	2 cut(s)	501, 882
BisI	GCNGC	9 cut(s)	58, 183, 186, 189, 438, 556, 898, 942, 945
BlsI	GCNGC	9 cut(s)	59, 184, 187, 190, 439, 557, 899, 943, 946
Bme1390I	CCNGG	4 cut(s)	461, 560, 684, 724
Bme18I	GGWCC	1 cut(s)	405
BmgBI	CACGTC	2 cut(s)	640, 784
BmgT120I	GGNCC	6 cut(s)	405, 656, 657, 672, 685, 721
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	4 cut(s)	461, 560, 684, 724
BmrI	ACTGGG	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	643
BpiI	GAAGAC	2 cut(s)	403, 755
BpuMI	CCSGG	4 cut(s)	461, 560, 684, 724
BsaAI	YACGTR	1 cut(s)	757
BsaBI	GATNNNNATC	1 cut(s)	647
BsaHI	GRCGYC	2 cut(s)	471, 920
BsaI	GGTCTC	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse118I	RCCGGY	1 cut(s)	66
Bse1I	ACTGG	3 cut(s)	638, 674, 889
Bse8I	GATNNNNATC	1 cut(s)	647
BseGI	GGATG	3 cut(s)	42, 808, 876
BseJI	GATNNNNATC	1 cut(s)	647
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	638, 674, 889
BseRI	GAGGAG	6 cut(s)	104, 233, 319, 678, 848, 890
BseSI	GKGCMC	1 cut(s)	660
BseX3I	CGGCCG	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	847
BsgI	GTGCAG	1 cut(s)	835
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	6 cut(s)	357, 402, 658, 673, 687, 722
BsiEI	CGRYCG	1 cut(s)	403
BsiSI	CCGG	8 cut(s)	67, 403, 461, 560, 683, 688, 711, 724
BslFI	GGGAC	2 cut(s)	650, 794
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	4 cut(s)	362, 660, 836, 872
BsmBI	CGTCTC	1 cut(s)	836
BsmFI	GGGAC	2 cut(s)	650, 794
BsmI	GAATGC	1 cut(s)	590
BsnI	GGCC	6 cut(s)	357, 402, 658, 673, 687, 722
Bso31I	GGTCTC	1 cut(s)	362
Bsp120I	GGGCCC	1 cut(s)	656
Bsp1286I	GDGCHC	1 cut(s)	660
Bsp143I	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
BspANI	GGCC	6 cut(s)	357, 402, 658, 673, 687, 722
BspFNI	CGCG	1 cut(s)	254
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	698
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	744
BsrFI	RCCGGY	1 cut(s)	66
BsrI	ACTGG	3 cut(s)	638, 674, 889
BssAI	RCCGGY	1 cut(s)	66
BssMI	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
BssNI	GRCGYC	2 cut(s)	471, 920
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst4CI	ACNGT	3 cut(s)	229, 409, 911
BstACI	GRCGYC	2 cut(s)	471, 920
BstBAI	YACGTR	1 cut(s)	757
BstC8I	GCNNGC	1 cut(s)	590
BstDEI	CTNAG	2 cut(s)	317, 990
BstF5I	GGATG	3 cut(s)	42, 808, 876
BstFNI	CGCG	1 cut(s)	254
BstKTI	GATC	9 cut(s)	234, 297, 351, 522, 543, 607, 645, 651, 693
BstMAI	GTCTC	4 cut(s)	362, 660, 836, 872
BstMBI	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 209, 679, 735
BstSCI	CCNGG	4 cut(s)	459, 558, 682, 722
BstSLI	GKGCMC	1 cut(s)	660
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	403, 755
BstX2I	RGATCY	1 cut(s)	690
BstYI	RGATCY	1 cut(s)	690
BstZI	CGGCCG	1 cut(s)	400
BsuRI	GGCC	6 cut(s)	357, 402, 658, 673, 687, 722
BtrI	CACGTC	2 cut(s)	640, 784
BtsCI	GGATG	3 cut(s)	42, 808, 876
Cac8I	GCNNGC	1 cut(s)	590
CciI	TCATGA	1 cut(s)	766
Cfr10I	RCCGGY	1 cut(s)	66
Cfr13I	GGNCC	6 cut(s)	405, 656, 657, 672, 685, 721
CpoI	CGGWCCG	1 cut(s)	405
CseI	GACGC	3 cut(s)	243, 479, 853
Csp6I	GTAC	2 cut(s)	314, 487
CspI	CGGWCCG	1 cut(s)	405
CviAII	CATG	4 cut(s)	88, 445, 617, 767
CviQI	GTAC	2 cut(s)	314, 487
DdeI	CTNAG	2 cut(s)	317, 990
DpnI	GATC	9 cut(s)	233, 296, 350, 521, 542, 606, 644, 650, 692
DpnII	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
DrdI	GACNNNNNNGTC	1 cut(s)	925
DseDI	GACNNNNNNGTC	1 cut(s)	925
EaeI	YGGCCR	1 cut(s)	400
EagI	CGGCCG	1 cut(s)	400
EclXI	CGGCCG	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	660
Eco31I	GGTCTC	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	405
Eco52I	CGGCCG	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	757
Eco72I	CACGTG	1 cut(s)	757
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	660
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	4 cut(s)	91, 448, 620, 770
FaqI	GGGAC	2 cut(s)	650, 794
FatI	CATG	4 cut(s)	87, 444, 616, 766
FauI	CCCGC	2 cut(s)	731, 737
FbaI	TGATCA	2 cut(s)	231, 519
FblI	GTMKAC	2 cut(s)	621, 630
Fnu4HI	GCNGC	9 cut(s)	58, 183, 186, 189, 438, 556, 898, 942, 945
FokI	GGATG	3 cut(s)	29, 815, 883
FriOI	GRGCYC	1 cut(s)	660
Fsp4HI	GCNGC	9 cut(s)	58, 183, 186, 189, 438, 556, 898, 942, 945
FspBI	CTAG	2 cut(s)	501, 882
GluI	GCNGC	9 cut(s)	58, 183, 186, 189, 438, 556, 898, 942, 945
GsaI	CCCAGC	1 cut(s)	851
HaeIII	GGCC	6 cut(s)	357, 402, 658, 673, 687, 722
HapII	CCGG	8 cut(s)	67, 403, 461, 560, 683, 688, 711, 724
HgaI	GACGC	3 cut(s)	243, 479, 853
Hin1I	GRCGYC	2 cut(s)	471, 920
Hin1II	CATG	4 cut(s)	91, 448, 620, 770
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HinfI	GANTC	4 cut(s)	25, 568, 597, 677
HpaII	CCGG	8 cut(s)	67, 403, 461, 560, 683, 688, 711, 724
HphI	GGTGA	3 cut(s)	73, 352, 697
Hpy166II	GTNNAC	4 cut(s)	99, 489, 622, 631
Hpy188I	TCNGA	7 cut(s)	292, 310, 545, 567, 583, 596, 612
Hpy188III	TCNNGA	5 cut(s)	346, 379, 646, 767, 775
Hpy8I	GTNNAC	4 cut(s)	99, 489, 622, 631
Hpy99I	CGWCG	9 cut(s)	259, 422, 473, 482, 656, 931, 934, 937, 940
HpyAV	CCTTC	2 cut(s)	94, 383
HpyCH4III	ACNGT	3 cut(s)	229, 409, 911
HpyCH4IV	ACGT	7 cut(s)	272, 312, 480, 639, 756, 783, 920
HpyCH4V	TGCA	3 cut(s)	146, 588, 816
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 209, 679, 735
HpyF3I	CTNAG	2 cut(s)	317, 990
HpySE526I	ACGT	7 cut(s)	272, 312, 480, 639, 756, 783, 920
Hsp92I	GRCGYC	2 cut(s)	471, 920
Hsp92II	CATG	4 cut(s)	91, 448, 620, 770
Ksp22I	TGATCA	2 cut(s)	231, 519
Kzo9I	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
LmnI	GCTCC	5 cut(s)	65, 246, 332, 726, 741
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	2 cut(s)	501, 882
MaeII	ACGT	7 cut(s)	272, 312, 480, 639, 756, 783, 920
MaeIII	GTNAC	2 cut(s)	338, 916
MalI	GATC	9 cut(s)	233, 296, 350, 521, 542, 606, 644, 650, 692
MbiI	CCGCTC	1 cut(s)	744
MboI	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
MflI	RGATCY	1 cut(s)	690
MhlI	GDGCHC	1 cut(s)	660
MluCI	AATT	2 cut(s)	823, 952
MluI	ACGCGT	1 cut(s)	252
MlyI	GAGTC	1 cut(s)	671
MmeI	TCCRAC	1 cut(s)	87
Mph1103I	ATGCAT	1 cut(s)	148
MslI	CAYNNNNRTG	2 cut(s)	86, 227
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	8 cut(s)	67, 403, 461, 560, 683, 688, 711, 724
MspR9I	CCNGG	4 cut(s)	461, 560, 684, 724
Mva1269I	GAATGC	1 cut(s)	590
MvnI	CGCG	1 cut(s)	254
MwoI	GCNNNNNNNGC	4 cut(s)	188, 209, 679, 735
NciI	CCSGG	4 cut(s)	461, 560, 684, 724
NdeII	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
NlaIII	CATG	4 cut(s)	91, 448, 620, 770
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	916
NsiI	ATGCAT	1 cut(s)	148
OliI	CACNNNNGTG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	766
PcsI	WCGNNNNNNNCGW	6 cut(s)	405, 474, 477, 636, 926, 932
PctI	GAATGC	1 cut(s)	590
PfeI	GAWTC	3 cut(s)	25, 568, 597
PkrI	GCNGC	9 cut(s)	59, 184, 187, 190, 439, 557, 899, 943, 946
PleI	GAGTC	1 cut(s)	671
PmaCI	CACGTG	1 cut(s)	757
PmlI	CACGTG	1 cut(s)	757
PpsI	GAGTC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	757
PspCI	CACGTG	1 cut(s)	757
PspFI	CCCAGC	1 cut(s)	847
PspN4I	GGNNCC	1 cut(s)	658
PspOMI	GGGCCC	1 cut(s)	656
PspPI	GGNCC	6 cut(s)	405, 656, 657, 672, 685, 721
PsrI	GAACNNNNNNTAC	4 cut(s)	416, 448, 605, 637
PsuI	RGATCY	1 cut(s)	690
RsaI	GTAC	2 cut(s)	315, 488
RsaNI	GTAC	2 cut(s)	314, 487
RseI	CAYNNNNRTG	2 cut(s)	86, 227
Rsr2I	CGGWCCG	1 cut(s)	405
RsrII	CGGWCCG	1 cut(s)	405
SalI	GTCGAC	1 cut(s)	629
SatI	GCNGC	9 cut(s)	58, 183, 186, 189, 438, 556, 898, 942, 945
Sau3AI	GATC	9 cut(s)	231, 294, 348, 519, 540, 604, 642, 648, 690
Sau96I	GGNCC	6 cut(s)	405, 656, 657, 672, 685, 721
SchI	GAGTC	1 cut(s)	671
ScrFI	CCNGG	4 cut(s)	461, 560, 684, 724
SduI	GDGCHC	1 cut(s)	660
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	2 cut(s)	86, 227
Sse9I	AATT	2 cut(s)	823, 952
SspMI	CTAG	2 cut(s)	501, 882
StyD4I	CCNGG	4 cut(s)	459, 558, 682, 722
TaaI	ACNGT	3 cut(s)	229, 409, 911
TaiI	ACGT	7 cut(s)	275, 315, 483, 642, 759, 786, 923
TaqI	TCGA	6 cut(s)	152, 257, 417, 468, 630, 651
TaqII	GACCGA	1 cut(s)	527
TasI	AATT	2 cut(s)	823, 952
TatI	WGTACW	1 cut(s)	486
TauI	GCSGC	8 cut(s)	185, 188, 191, 440, 558, 900, 944, 947
TfiI	GAWTC	3 cut(s)	25, 568, 597
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	916
TspDTI	ATGAA	4 cut(s)	17, 76, 403, 755
VpaK11BI	GGWCC	1 cut(s)	405
XapI	RAATTY	1 cut(s)	823
XmiI	GTMKAC	2 cut(s)	621, 630
XspI	CTAG	2 cut(s)	501, 882
ZraI	GACGTC	1 cut(s)	921
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.