Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

16309955 .. 16310944

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G014480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGAAGAACGGCAACACCAAGCTGATTCTTCTCCACCCTTACATCCAAAAACAAGGCAGCTCCAACCGGCTATGGCTTCTCACCTTCATGTCCTTGTCCACCCTCGCCTTTCTCCTCACAATCATTTACACCAGCGGATTGTATGCATATTCGACAGCAACTACAACCACCACCACAACCGCCAATATAGCCGCCGCCACAATAACCGCCACCAACGCCCCAATGCCGACCACCGTGATCAACACGCTCCTCCACTACGCGTCGAAATCAAACGACACGTTCAAAATGTCTTACTCCGAGATCAAACCCATCTCGGACGTACTAAGAAAATGTTCGTCCCCTTGTAACTTCCTGATCTTCGGCCTCACCCACGAGACCCTTCTCTGGAAAGCCCTAAACCACAACGGCCGGACCGTCTTCATCGACGAGAACCGCTACTACGCCGCCTACATGGAAGAAAAGCACCCGGAAATCGACGCCTACGACGTTCAATACACCACCAAGACTAGAGAGATGACCGAGTTGATCAAAGTCGCCAAAGAACAGATCAGAAACGAGTGCCGGCCGGTTCAGAATCTATTGTTCTCGGAATGCAAGCTCGGAATCAATGATCTTCCGAACCATGTCTACGAAGTCGACTGGGACGTGATCTTGATCGACGGGCCCAGAGGAGACTGGCCCGACTCTCCTGGCCGGATCTCTCCCATTTTCACCTCCGGCGTTCTGGCCAGGAGTAAAAAGGGCGGGAGCGGGAAGACACACGTGTTCGTTCATGACTTCAGGAGGGACGTGGAGAGGGTCTGTGGGGATGAGTTTCTGTGCAGAGAGAATTTGGTGGAGGAGAGTGAGACGCTGGGGCATTATGTGGTGGAGAGGATGGAGGAGACCAGCTTCCAGTTCTGCCGCAACAACAACCGTCAAGTGACGTCATCATCGTCGGCGGCGGCAAATAATTCTTCTTCTTCTTCTTCTTCGTCCTTGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

329

Amino Acids

37.02

Weight (kDa)

6.51

Isoelectric Point (pI)

49.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	100 - 288	1.7e-81	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	929
AccBSI	CCGCTC	1 cut(s)	750
AccI	GTMKAC	2 cut(s)	627, 636
AccII	CGCG	1 cut(s)	260
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	4 cut(s)	406, 563, 691, 726
AcsI	RAATTY	1 cut(s)	829
AcuI	CTGAAG	1 cut(s)	763
AcvI	CACGTG	1 cut(s)	763
AcyI	GRCGYC	2 cut(s)	477, 926
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	4 cut(s)	258, 276, 760, 762
AgsI	TTSAA	2 cut(s)	283, 491
AjiI	CACGTC	2 cut(s)	646, 790
AjnI	CCWGG	2 cut(s)	688, 728
AluBI	AGCT	4 cut(s)	22, 60, 598, 891
AluI	AGCT	4 cut(s)	22, 60, 598, 891
Alw26I	GTCTC	4 cut(s)	368, 666, 842, 878
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	7 cut(s)	361, 406, 563, 662, 677, 691, 726
ApaI	GGGCCC	1 cut(s)	666
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	829
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	4 cut(s)	411, 662, 663, 678
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	73, 358, 703
AvaII	GGWCC	1 cut(s)	411
BaeGI	GKGCMC	1 cut(s)	666
BalI	TGGCCA	1 cut(s)	728
BanII	GRGCYC	1 cut(s)	666
BauI	CACGAG	1 cut(s)	371
BbrPI	CACGTG	1 cut(s)	763
BbsI	GAAGAC	2 cut(s)	409, 761
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	317, 871
BceAI	ACGGC	2 cut(s)	25, 421
BciT130I	CCWGG	2 cut(s)	690, 730
BclI	TGATCA	2 cut(s)	237, 525
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	4 cut(s)	368, 666, 842, 878
BfaI	CTAG	1 cut(s)	507
BisI	GCNGC	7 cut(s)	58, 192, 195, 444, 904, 942, 945
BlsI	GCNGC	7 cut(s)	59, 193, 196, 445, 905, 943, 946
Bme1390I	CCNGG	3 cut(s)	467, 690, 730
Bme18I	GGWCC	1 cut(s)	411
BmgBI	CACGTC	2 cut(s)	646, 790
BmgT120I	GGNCC	4 cut(s)	411, 662, 663, 678
BmiI	GGNNCC	1 cut(s)	664
BmrFI	CCNGG	3 cut(s)	467, 690, 730
BmrI	ACTGGG	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	649
BpiI	GAAGAC	2 cut(s)	409, 761
BpuMI	CCSGG	1 cut(s)	467
BsaAI	YACGTR	1 cut(s)	763
BsaBI	GATNNNNATC	1 cut(s)	653
BsaHI	GRCGYC	2 cut(s)	477, 926
BsaI	GGTCTC	2 cut(s)	368, 878
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse118I	RCCGGY	3 cut(s)	66, 561, 565
Bse1I	ACTGG	3 cut(s)	644, 680, 895
Bse8I	GATNNNNATC	1 cut(s)	653
BseBI	CCWGG	2 cut(s)	690, 730
BseGI	GGATG	3 cut(s)	42, 814, 882
BseJI	GATNNNNATC	1 cut(s)	653
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseNI	ACTGG	3 cut(s)	644, 680, 895
BseRI	GAGGAG	5 cut(s)	104, 239, 684, 854, 896
BseSI	GKGCMC	1 cut(s)	666
BseX3I	CGGCCG	2 cut(s)	406, 563
BseXI	GCAGC	1 cut(s)	69
BseYI	CCCAGC	1 cut(s)	853
BsgI	GTGCAG	1 cut(s)	841
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	2 cut(s)	409, 566
BshFI	GGCC	7 cut(s)	363, 408, 565, 664, 679, 693, 728
BsiEI	CGRYCG	2 cut(s)	409, 566
BsiSI	CCGG	7 cut(s)	67, 409, 467, 562, 566, 694, 717
BslFI	GGGAC	3 cut(s)	322, 656, 800
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	4 cut(s)	368, 666, 842, 878
BsmBI	CGTCTC	1 cut(s)	842
BsmFI	GGGAC	3 cut(s)	322, 656, 800
BsmI	GAATGC	1 cut(s)	596
BsnI	GGCC	7 cut(s)	363, 408, 565, 664, 679, 693, 728
Bso31I	GGTCTC	2 cut(s)	368, 878
Bsp120I	GGGCCC	1 cut(s)	662
Bsp1286I	GDGCHC	1 cut(s)	666
Bsp143I	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
BspANI	GGCC	7 cut(s)	363, 408, 565, 664, 679, 693, 728
BspFNI	CGCG	1 cut(s)	260
BspHI	TCATGA	1 cut(s)	772
BspLI	GGNNCC	1 cut(s)	664
BspPI	GGATC	1 cut(s)	704
BspTNI	GGTCTC	2 cut(s)	368, 878
BsrBI	CCGCTC	1 cut(s)	750
BsrFI	RCCGGY	3 cut(s)	66, 561, 565
BsrI	ACTGG	3 cut(s)	644, 680, 895
BssAI	RCCGGY	3 cut(s)	66, 561, 565
BssMI	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
BssNI	GRCGYC	2 cut(s)	477, 926
BssSI	CACGAG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	371
Bst2UI	CCWGG	2 cut(s)	690, 730
Bst4CI	ACNGT	3 cut(s)	235, 415, 917
BstACI	GRCGYC	2 cut(s)	477, 926
BstBAI	YACGTR	1 cut(s)	763
BstC8I	GCNNGC	2 cut(s)	563, 596
BstDEI	CTNAG	2 cut(s)	323, 984
BstF5I	GGATG	3 cut(s)	42, 814, 882
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	9 cut(s)	240, 303, 357, 528, 549, 613, 651, 657, 699
BstMAI	GTCTC	4 cut(s)	368, 666, 842, 878
BstMBI	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
BstMCI	CGRYCG	2 cut(s)	409, 566
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 215
BstNI	CCWGG	2 cut(s)	690, 730
BstSCI	CCNGG	3 cut(s)	465, 688, 728
BstSLI	GKGCMC	1 cut(s)	666
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	409, 761
BstX2I	RGATCY	1 cut(s)	696
BstYI	RGATCY	1 cut(s)	696
BstZI	CGGCCG	2 cut(s)	406, 563
BsuRI	GGCC	7 cut(s)	363, 408, 565, 664, 679, 693, 728
BtrI	CACGTC	2 cut(s)	646, 790
BtsCI	GGATG	3 cut(s)	42, 814, 882
Cac8I	GCNNGC	2 cut(s)	563, 596
CciI	TCATGA	1 cut(s)	772
Cfr10I	RCCGGY	3 cut(s)	66, 561, 565
Cfr13I	GGNCC	4 cut(s)	411, 662, 663, 678
CpoI	CGGWCCG	1 cut(s)	411
CseI	GACGC	3 cut(s)	249, 485, 859
Csp6I	GTAC	1 cut(s)	320
CspI	CGGWCCG	1 cut(s)	411
CviAII	CATG	4 cut(s)	88, 451, 623, 773
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	2 cut(s)	323, 984
DpnI	GATC	9 cut(s)	239, 302, 356, 527, 548, 612, 650, 656, 698
DpnII	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
EaeI	YGGCCR	4 cut(s)	406, 563, 691, 726
EagI	CGGCCG	2 cut(s)	406, 563
EclXI	CGGCCG	2 cut(s)	406, 563
Eco24I	GRGCYC	1 cut(s)	666
Eco31I	GGTCTC	2 cut(s)	368, 878
Eco47I	GGWCC	1 cut(s)	411
Eco52I	CGGCCG	2 cut(s)	406, 563
Eco57I	CTGAAG	1 cut(s)	763
Eco72I	CACGTG	1 cut(s)	763
EcoRII	CCWGG	2 cut(s)	688, 728
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	666
Esp3I	CGTCTC	1 cut(s)	842
FaeI	CATG	4 cut(s)	91, 454, 626, 776
FaiI	YATR	9 cut(s)	73, 89, 144, 148, 188, 452, 624, 774, 864
FaqI	GGGAC	3 cut(s)	322, 656, 800
FatI	CATG	4 cut(s)	87, 450, 622, 772
FauI	CCCGC	2 cut(s)	737, 743
FbaI	TGATCA	2 cut(s)	237, 525
FblI	GTMKAC	2 cut(s)	627, 636
Fnu4HI	GCNGC	7 cut(s)	58, 192, 195, 444, 904, 942, 945
FokI	GGATG	3 cut(s)	29, 821, 889
FriOI	GRGCYC	1 cut(s)	666
Fsp4HI	GCNGC	7 cut(s)	58, 192, 195, 444, 904, 942, 945
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	7 cut(s)	58, 192, 195, 444, 904, 942, 945
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	7 cut(s)	363, 408, 565, 664, 679, 693, 728
HapII	CCGG	7 cut(s)	67, 409, 467, 562, 566, 694, 717
HgaI	GACGC	3 cut(s)	249, 485, 859
Hin1I	GRCGYC	2 cut(s)	477, 926
Hin1II	CATG	4 cut(s)	91, 454, 626, 776
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	4 cut(s)	25, 574, 603, 683
HpaII	CCGG	7 cut(s)	67, 409, 467, 562, 566, 694, 717
HphI	GGTGA	3 cut(s)	73, 358, 703
Hpy166II	GTNNAC	3 cut(s)	99, 628, 637
Hpy188I	TCNGA	7 cut(s)	298, 316, 551, 573, 589, 602, 618
Hpy188III	TCNNGA	5 cut(s)	352, 385, 652, 773, 781
Hpy8I	GTNNAC	3 cut(s)	99, 628, 637
Hpy99I	CGWCG	6 cut(s)	265, 428, 479, 488, 662, 940
HpyAV	CCTTC	2 cut(s)	94, 389
HpyCH4III	ACNGT	3 cut(s)	235, 415, 917
HpyCH4IV	ACGT	7 cut(s)	278, 318, 486, 645, 762, 789, 926
HpyCH4V	TGCA	3 cut(s)	146, 594, 822
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 215
HpyF3I	CTNAG	2 cut(s)	323, 984
HpySE526I	ACGT	7 cut(s)	278, 318, 486, 645, 762, 789, 926
Hsp92I	GRCGYC	2 cut(s)	477, 926
Hsp92II	CATG	4 cut(s)	91, 454, 626, 776
KroI	GCCGGC	1 cut(s)	561
KroNI	GCCGGC	1 cut(s)	563
Ksp22I	TGATCA	2 cut(s)	237, 525
Kzo9I	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
LmnI	GCTCC	3 cut(s)	65, 252, 747
Lsp1109I	GCAGC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	7 cut(s)	278, 318, 486, 645, 762, 789, 926
MaeIII	GTNAC	2 cut(s)	344, 922
MalI	GATC	9 cut(s)	239, 302, 356, 527, 548, 612, 650, 656, 698
MbiI	CCGCTC	1 cut(s)	750
MboI	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
MflI	RGATCY	1 cut(s)	696
MhlI	GDGCHC	1 cut(s)	666
MlsI	TGGCCA	1 cut(s)	728
MluCI	AATT	2 cut(s)	829, 952
MluI	ACGCGT	1 cut(s)	258
MluNI	TGGCCA	1 cut(s)	728
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	1 cut(s)	87
Mox20I	TGGCCA	1 cut(s)	728
Mph1103I	ATGCAT	1 cut(s)	148
MroNI	GCCGGC	1 cut(s)	561
MroXI	GAANNNNTTC	1 cut(s)	331
MscI	TGGCCA	1 cut(s)	728
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	1 cut(s)	728
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	7 cut(s)	67, 409, 467, 562, 566, 694, 717
MspR9I	CCNGG	3 cut(s)	467, 690, 730
Mva1269I	GAATGC	1 cut(s)	596
MvaI	CCWGG	2 cut(s)	690, 730
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	2 cut(s)	188, 215
NaeI	GCCGGC	1 cut(s)	563
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
NgoMIV	GCCGGC	1 cut(s)	561
NlaIII	CATG	4 cut(s)	91, 454, 626, 776
NlaIV	GGNNCC	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	922
NsiI	ATGCAT	1 cut(s)	148
PagI	TCATGA	1 cut(s)	772
PcsI	WCGNNNNNNNCGW	5 cut(s)	411, 480, 483, 642, 932
PctI	GAATGC	1 cut(s)	596
PdiI	GCCGGC	1 cut(s)	563
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	3 cut(s)	25, 574, 603
PkrI	GCNGC	7 cut(s)	59, 193, 196, 445, 905, 943, 946
PleI	GAGTC	1 cut(s)	677
PmaCI	CACGTG	1 cut(s)	763
PmlI	CACGTG	1 cut(s)	763
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	1 cut(s)	763
Psp6I	CCWGG	2 cut(s)	688, 728
PspCI	CACGTG	1 cut(s)	763
PspFI	CCCAGC	1 cut(s)	853
PspGI	CCWGG	2 cut(s)	688, 728
PspN4I	GGNNCC	1 cut(s)	664
PspOMI	GGGCCC	1 cut(s)	662
PspPI	GGNCC	4 cut(s)	411, 662, 663, 678
PsrI	GAACNNNNNNTAC	4 cut(s)	422, 454, 611, 643
PsuI	RGATCY	1 cut(s)	696
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	86
Rsr2I	CGGWCCG	1 cut(s)	411
RsrII	CGGWCCG	1 cut(s)	411
SalI	GTCGAC	1 cut(s)	635
SatI	GCNGC	7 cut(s)	58, 192, 195, 444, 904, 942, 945
Sau3AI	GATC	9 cut(s)	237, 300, 354, 525, 546, 610, 648, 654, 696
Sau96I	GGNCC	4 cut(s)	411, 662, 663, 678
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	3 cut(s)	467, 690, 730
SduI	GDGCHC	1 cut(s)	666
SinI	GGWCC	1 cut(s)	411
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	829, 952
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	3 cut(s)	465, 688, 728
TaaI	ACNGT	3 cut(s)	235, 415, 917
TaiI	ACGT	7 cut(s)	281, 321, 489, 648, 765, 792, 929
TaqI	TCGA	6 cut(s)	152, 263, 423, 474, 636, 657
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	829, 952
TauI	GCSGC	6 cut(s)	194, 197, 446, 906, 944, 947
TfiI	GAWTC	3 cut(s)	25, 574, 603
TseFI	GTSAC	1 cut(s)	922
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	922
TspDTI	ATGAA	4 cut(s)	17, 76, 409, 761
VpaK11BI	GGWCC	1 cut(s)	411
XapI	RAATTY	1 cut(s)	829
XmiI	GTMKAC	2 cut(s)	627, 636
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	507
ZraI	GACGTC	1 cut(s)	927
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.