Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

26321750 .. 26322730

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1287000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGAACAATATCAACACAAAGCTGATCCTTCTCCACCCTTACATCCAAAAGCAAGGAAGCTCTAACCGCCTATGGCTTCTGGCCTTCATGTCACTATTCACACTCGCCTTCCTCCTCACAATCGTCTACACAAGCGGCTTATACGCGTACTCATCCACCAGCACCACTACAACAACCACAATCCCCGCCCCCACAATAACTGCCACTAACAACGCTGCCCCACAGCTCCCCACCACGGTCATCAACACCCTCCTCCACTACGCATCAAAATCCAACGACACGTTCAAAATGTCGTACGCAGACATCAAACCCATCTCTGACGCGCTCCGAAAATGCTCCACCCCATGCAACTTCCTCATTTTCGGACTCACCCATGAAACCCTACTCTGGAAAGCCCTAAACAACAATGGTCGCACCGTCTACATCGACGAGAACAGGTACTACGCCGCCTACATGGAGGAGAAGCACCCTGAAATCGACGCCTACGACGTGCAGTACACGACGAAGCTGAAGGAAACGGAGGAGCTGATCGCCGTGGCAAAAGAGCAAATACGCAACGAGTGCCGCCCGGTGCAGAATCTGCTTTTCTCCGAGTGCAAGCTGGGGATCAACGACCTGCCGAACCACGTGTACGAGGTCGAATGGGACGTGATCTTGGTGGACGGCCCCAGCAGCGGCTGGCCGGACGCGCCCGGGAGAGTGATGTCCATATTCACGTCGGGTGTGTTGGCGAGGAGCAAGAAGGGTGGGAACGGGAAGACGCAGGTGTTTGTGCATGACTTTGGCGGGACGGAGGTGATGGTTGCCGGGAACGAATTTTTGTGTCGTGAGAATTTGGTGGAGGCGACGGAGACGATGGGGCATTACGTGGTGGAGAGAATGGACGAGAGTAGCTTCCAGTTCTGTCGCAACCAAACGACGTCGGTTTGGTCAGCAGCAAAGAATTCCTCTGCTTCTTCTTCTTCAGCATCAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

327

Amino Acids

36.31

Weight (kDa)

6.0

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	102 - 290	1.1e-72	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	757
AatII	GACGTC	1 cut(s)	926
Acc36I	ACCTGC	2 cut(s)	627, 757
AccI	GTMKAC	2 cut(s)	129, 423
AccII	CGCG	3 cut(s)	149, 326, 692
AciI	CCGC	7 cut(s)	70, 138, 189, 450, 568, 678, 789
AclWI	GGATC	2 cut(s)	22, 617
AcoI	YGGCCR	1 cut(s)	683
AcsI	RAATTY	3 cut(s)	818, 835, 946
AcuI	CTGAAG	2 cut(s)	533, 951
AcvI	CACGTG	1 cut(s)	631
AcyI	GRCGYC	2 cut(s)	483, 923
AfaI	GTAC	5 cut(s)	152, 299, 443, 500, 635
AfiI	CCNNNNNNNGG	3 cut(s)	238, 390, 677
AflIII	ACRYGT	3 cut(s)	147, 282, 630
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	3 cut(s)	493, 652, 720
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	8 cut(s)	25, 63, 229, 511, 529, 604, 897, 977
AluI	AGCT	8 cut(s)	25, 63, 229, 511, 529, 604, 897, 977
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	22, 617
AlwNI	CAGNNNCTG	2 cut(s)	583, 681
Ama87I	CYCGRG	1 cut(s)	695
AoxI	GGCC	3 cut(s)	84, 667, 683
ApeKI	GCWGC	3 cut(s)	218, 675, 938
ApoI	RAATTY	3 cut(s)	818, 835, 946
AspLEI	GCGC	2 cut(s)	328, 694
AspS9I	GGNCC	1 cut(s)	668
AsuC2I	CCSGG	4 cut(s)	572, 696, 697, 811
AsuHPI	GGTGA	2 cut(s)	364, 811
AvaI	CYCGRG	1 cut(s)	695
BbrPI	CACGTG	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	767
BbvI	GCAGC	3 cut(s)	205, 687, 950
BccI	CCATC	3 cut(s)	323, 796, 853
BceAI	ACGGC	2 cut(s)	521, 682
BcnI	CCSGG	4 cut(s)	572, 696, 697, 811
BcoDI	GTCTC	1 cut(s)	848
BfuAI	ACCTGC	2 cut(s)	627, 757
BisI	GCNGC	7 cut(s)	139, 219, 450, 568, 676, 679, 939
BlsI	GCNGC	7 cut(s)	140, 220, 451, 569, 677, 680, 940
Bme1390I	CCNGG	4 cut(s)	572, 696, 697, 811
BmeT110I	CYCGRG	1 cut(s)	695
BmgBI	CACGTC	3 cut(s)	493, 652, 720
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	4 cut(s)	572, 696, 697, 811
BmsI	GCATC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	767
BpuMI	CCSGG	4 cut(s)	572, 696, 697, 811
BsaAI	YACGTR	2 cut(s)	631, 871
BsaHI	GRCGYC	2 cut(s)	483, 923
BsaJI	CCNNGG	3 cut(s)	237, 537, 695
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 390, 677
Bse1I	ACTGG	1 cut(s)	901
BseDI	CCNNGG	3 cut(s)	237, 537, 695
BseGI	GGATG	2 cut(s)	45, 155
BseLI	CCNNNNNNNGG	3 cut(s)	238, 390, 677
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	5 cut(s)	107, 245, 476, 539, 751
BseXI	GCAGC	3 cut(s)	205, 687, 950
BseYI	CCCAGC	2 cut(s)	604, 671
BsgI	GTGCAG	2 cut(s)	515, 596
Bsh1236I	CGCG	3 cut(s)	149, 326, 692
BshFI	GGCC	3 cut(s)	86, 669, 685
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	572, 686, 696, 810
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	662, 805
BslI	CCNNNNNNNGG	3 cut(s)	238, 390, 677
BsmAI	GTCTC	1 cut(s)	848
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	2 cut(s)	662, 805
BsnI	GGCC	3 cut(s)	86, 669, 685
BsoBI	CYCGRG	1 cut(s)	695
Bsp143I	GATC	4 cut(s)	27, 531, 609, 654
BspACI	CCGC	7 cut(s)	70, 138, 189, 450, 568, 678, 789
BspANI	GGCC	3 cut(s)	86, 669, 685
BspFNI	CGCG	3 cut(s)	149, 326, 692
BspLI	GGNNCC	1 cut(s)	670
BspMI	ACCTGC	2 cut(s)	627, 757
BspPI	GGATC	2 cut(s)	22, 617
BsrI	ACTGG	1 cut(s)	901
BssECI	CCNNGG	3 cut(s)	237, 537, 695
BssMI	GATC	4 cut(s)	27, 531, 609, 654
BssNI	GRCGYC	2 cut(s)	483, 923
Bst4CI	ACNGT	2 cut(s)	241, 421
BstACI	GRCGYC	2 cut(s)	483, 923
BstAPI	GCANNNNNTGC	2 cut(s)	564, 583
BstBAI	YACGTR	2 cut(s)	631, 871
BstC8I	GCNNGC	2 cut(s)	602, 683
BstDSI	CCRYGG	2 cut(s)	237, 537
BstF5I	GGATG	2 cut(s)	45, 155
BstFNI	CGCG	3 cut(s)	149, 326, 692
BstHHI	GCGC	2 cut(s)	328, 694
BstKTI	GATC	4 cut(s)	30, 534, 612, 657
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	4 cut(s)	27, 531, 609, 654
BstMWI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 675, 691
BstSCI	CCNGG	4 cut(s)	570, 694, 695, 809
BstUI	CGCG	3 cut(s)	149, 326, 692
BstV1I	GCAGC	3 cut(s)	205, 687, 950
BstV2I	GAAGAC	1 cut(s)	767
BsuRI	GGCC	3 cut(s)	86, 669, 685
BtgI	CCRYGG	2 cut(s)	237, 537
BtrI	CACGTC	3 cut(s)	493, 652, 720
BtsCI	GGATG	2 cut(s)	45, 155
BveI	ACCTGC	2 cut(s)	627, 757
Cac8I	GCNNGC	2 cut(s)	602, 683
CaiI	CAGNNNCTG	2 cut(s)	583, 681
CfoI	GCGC	2 cut(s)	328, 694
Cfr13I	GGNCC	1 cut(s)	668
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	4 cut(s)	332, 491, 698, 772
Csp6I	GTAC	5 cut(s)	151, 298, 442, 499, 634
CspCI	CAANNNNNGTGG	2 cut(s)	730, 765
CviAII	CATG	5 cut(s)	91, 348, 377, 457, 779
CviQI	GTAC	5 cut(s)	151, 298, 442, 499, 634
DpnI	GATC	4 cut(s)	29, 533, 611, 656
DpnII	GATC	4 cut(s)	27, 531, 609, 654
EaeI	YGGCCR	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	533, 951
Eco72I	CACGTG	1 cut(s)	631
Eco88I	CYCGRG	1 cut(s)	695
EcoRI	GAATTC	1 cut(s)	946
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	5 cut(s)	94, 351, 380, 460, 782
FaiI	YATR	8 cut(s)	76, 92, 145, 349, 378, 458, 713, 780
FaqI	GGGAC	2 cut(s)	662, 805
FatI	CATG	5 cut(s)	90, 347, 376, 456, 778
FauI	CCCGC	2 cut(s)	196, 782
FblI	GTMKAC	2 cut(s)	129, 423
Fnu4HI	GCNGC	7 cut(s)	139, 219, 450, 568, 676, 679, 939
FokI	GGATG	2 cut(s)	32, 142
Fsp4HI	GCNGC	7 cut(s)	139, 219, 450, 568, 676, 679, 939
GlaI	GCGC	2 cut(s)	327, 693
GluI	GCNGC	7 cut(s)	139, 219, 450, 568, 676, 679, 939
GsaI	CCCAGC	2 cut(s)	608, 675
HaeIII	GGCC	3 cut(s)	86, 669, 685
HapII	CCGG	4 cut(s)	572, 686, 696, 810
HgaI	GACGC	4 cut(s)	332, 491, 698, 772
HhaI	GCGC	2 cut(s)	328, 694
Hin1I	GRCGYC	2 cut(s)	483, 923
Hin1II	CATG	5 cut(s)	94, 351, 380, 460, 782
Hin6I	GCGC	2 cut(s)	326, 692
HinP1I	GCGC	2 cut(s)	326, 692
HinfI	GANTC	2 cut(s)	369, 580
HpaII	CCGG	4 cut(s)	572, 686, 696, 810
HphI	GGTGA	2 cut(s)	364, 811
Hpy166II	GTNNAC	5 cut(s)	130, 424, 501, 634, 664
Hpy188I	TCNGA	4 cut(s)	322, 332, 368, 595
Hpy188III	TCNNGA	2 cut(s)	391, 830
Hpy8I	GTNNAC	5 cut(s)	130, 424, 501, 634, 664
Hpy99I	CGWCG	8 cut(s)	434, 485, 494, 508, 724, 853, 925, 928
HpyAV	CCTTC	5 cut(s)	41, 97, 121, 508, 739
HpyCH4III	ACNGT	2 cut(s)	241, 421
HpyCH4IV	ACGT	7 cut(s)	284, 492, 630, 651, 719, 870, 923
HpyCH4V	TGCA	5 cut(s)	351, 496, 577, 600, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 675, 691
HpySE526I	ACGT	7 cut(s)	284, 492, 630, 651, 719, 870, 923
Hsp92I	GRCGYC	2 cut(s)	483, 923
Hsp92II	CATG	5 cut(s)	94, 351, 380, 460, 782
HspAI	GCGC	2 cut(s)	326, 692
Kzo9I	GATC	4 cut(s)	27, 531, 609, 654
LmnI	GCTCC	5 cut(s)	234, 333, 344, 526, 738
Lsp1109I	GCAGC	3 cut(s)	205, 687, 950
LweI	GCATC	1 cut(s)	275
MaeII	ACGT	7 cut(s)	284, 492, 630, 651, 719, 870, 923
MaeIII	GTNAC	1 cut(s)	93
MalI	GATC	4 cut(s)	29, 533, 611, 656
MboI	GATC	4 cut(s)	27, 531, 609, 654
MboII	GAAGA	5 cut(s)	16, 772, 951, 954, 957
MluCI	AATT	3 cut(s)	818, 835, 946
MluI	ACGCGT	1 cut(s)	147
MlyI	GAGTC	1 cut(s)	363
MmeI	TCCRAC	1 cut(s)	300
MseI	TTAA	1 cut(s)	979
MspA1I	CMGCKG	1 cut(s)	678
MspI	CCGG	4 cut(s)	572, 686, 696, 810
MspR9I	CCNGG	4 cut(s)	572, 696, 697, 811
MvnI	CGCG	3 cut(s)	149, 326, 692
MwoI	GCNNNNNNNGC	5 cut(s)	69, 564, 583, 675, 691
NciI	CCSGG	4 cut(s)	572, 696, 697, 811
NdeII	GATC	4 cut(s)	27, 531, 609, 654
NlaIII	CATG	5 cut(s)	94, 351, 380, 460, 782
NlaIV	GGNNCC	1 cut(s)	670
NmuCI	GTSAC	1 cut(s)	93
PaqCI	CACCTGC	1 cut(s)	757
PcsI	WCGNNNNNNNCGW	3 cut(s)	486, 489, 648
PfeI	GAWTC	1 cut(s)	580
Pfl23II	CGTACG	1 cut(s)	297
PkrI	GCNGC	7 cut(s)	140, 220, 451, 569, 677, 680, 940
PleI	GAGTC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	363
Ppu21I	YACGTR	2 cut(s)	631, 871
PspCI	CACGTG	1 cut(s)	631
PspFI	CCCAGC	2 cut(s)	604, 671
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	1 cut(s)	670
PspPI	GGNCC	1 cut(s)	668
PsrI	GAACNNNNNNTAC	4 cut(s)	428, 460, 617, 649
PstNI	CAGNNNCTG	2 cut(s)	583, 681
RsaI	GTAC	5 cut(s)	152, 299, 443, 500, 635
RsaNI	GTAC	5 cut(s)	151, 298, 442, 499, 634
SaqAI	TTAA	1 cut(s)	979
SatI	GCNGC	7 cut(s)	139, 219, 450, 568, 676, 679, 939
Sau3AI	GATC	4 cut(s)	27, 531, 609, 654
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	1 cut(s)	363
ScrFI	CCNGG	4 cut(s)	572, 696, 697, 811
SfaNI	GCATC	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	697
Sse9I	AATT	3 cut(s)	818, 835, 946
SsiI	CCGC	7 cut(s)	70, 138, 189, 450, 568, 678, 789
StyD4I	CCNGG	4 cut(s)	570, 694, 695, 809
TaaI	ACNGT	2 cut(s)	241, 421
TaiI	ACGT	7 cut(s)	287, 495, 633, 654, 722, 873, 926
TaqI	TCGA	3 cut(s)	429, 480, 642
TasI	AATT	3 cut(s)	818, 835, 946
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	4 cut(s)	141, 452, 570, 681
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	979
Tru9I	TTAA	1 cut(s)	979
TseFI	GTSAC	1 cut(s)	93
TseI	GCWGC	3 cut(s)	218, 675, 938
Tsp45I	GTSAC	1 cut(s)	93
TspDTI	ATGAA	3 cut(s)	17, 79, 393
TspGWI	ACGGA	3 cut(s)	536, 809, 866
TspMI	CCCGGG	1 cut(s)	695
XapI	RAATTY	3 cut(s)	818, 835, 946
XmaI	CCCGGG	1 cut(s)	695
XmiI	GTMKAC	2 cut(s)	129, 423
ZraI	GACGTC	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.