Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

15616585 .. 15617565

Gene Structure 981 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1177100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGAACAATACCAACACAAAGCTGATCCTTCTCCATCCTTACATCCAAAAGCAAGGAAACTCCAACCGCCTATGGCTTCTGGCCTTCATGTCATTGTTCACACTCGCCTTCCTCCTCACAATCGTCTACACAAGCGGCTTATACGCGTACTCATCCACCAGCACCACCACGACAACCACAATCCCCGCCGCCACAATAACCGCCACTAACACCGCCGCCCCACAGCTCCCCACCACAGTCATCAACACCCTCCTCCACTACGCATCCAAATCCAACGACACGTTCAAAATGCCGTACGCCGACATCAAGCCCATCTCTGATGCGCTCCGAAAATGCTCCACCCCATGCAACTTCCTCATTTTCGGGCTTACCCACGAAACCTTACTGTGGAAAGCCCTAAACAACAACGGCCGTACCGTGTACATCGACGAGAACCGGTACTACGCCGCCTACATGGAGGAGAAGCACCCCGAAATCGACGCCTACGACGTGCAGTACACGACAAAGGTGAAGGAAACCAAGGAGCTCATCGCCGTGGCAAAAGAGCAAATACGCAACGAGTGCCGTCCGGTGCAGAATCTGCTCTTCTCCGAGTGCAAGCTGGGGATCAACGACCTGCCCAACCACGTGTACGAGGTCGAGTGGGACGTGATCCTGGTGGACGGGCCCCGTGGCGGGTGGCCGGACGCGCCCGGGAGAGTGATGCCGATATTCACGTCGGGGGTGCTGGCGAGGAGCAAGAAGGGCGGGAACGGGAAGACGCACGTGTTTGTGCATGATATTGGGGGGACGGAGGTGAGGGTTGCTGGGAACGAGTTTTTGTGTCGGGAGAATTTGGTGGAGGCGACGGAGACGATGGGGCATTACGTGTTGGAGAGAATGGACGAGAGTAGCTTTCAGTTCTGCGGCAACCGCACGACTTCGTCTTCGTCAGCAGCAAAGAAATCTTCTGCTTCTTCTTCTTCAGCATCGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

327

Amino Acids

36.19

Weight (kDa)

7.63

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	102 - 290	1.8e-74	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	627
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	2 cut(s)	149, 692
AclWI	GGATC	3 cut(s)	22, 617, 649
AcoI	YGGCCR	2 cut(s)	412, 683
AcsI	RAATTY	1 cut(s)	835
AcuI	CTGAAG	1 cut(s)	951
AcvI	CACGTG	2 cut(s)	631, 769
AcyI	GRCGYC	1 cut(s)	483
AfaI	GTAC	7 cut(s)	152, 299, 418, 425, 443, 500, 635
AfiI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
AflIII	ACRYGT	5 cut(s)	147, 282, 630, 768, 870
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	1 cut(s)	289
AjiI	CACGTC	3 cut(s)	493, 652, 720
AjnI	CCWGG	1 cut(s)	657
AjuI	GAANNNNNNNTTGG	2 cut(s)	269, 301
AluBI	AGCT	5 cut(s)	25, 229, 529, 604, 897
AluI	AGCT	5 cut(s)	25, 229, 529, 604, 897
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	3 cut(s)	22, 617, 649
AlwNI	CAGNNNCTG	1 cut(s)	583
Ama87I	CYCGRG	1 cut(s)	695
AoxI	GGCC	4 cut(s)	84, 412, 668, 683
ApaI	GGGCCC	1 cut(s)	672
ApeKI	GCWGC	1 cut(s)	938
ApoI	RAATTY	1 cut(s)	835
ArsI	GACNNNNNNTTYG	2 cut(s)	913, 945
AsiGI	ACCGGT	1 cut(s)	438
AspLEI	GCGC	2 cut(s)	328, 694
AspS9I	GGNCC	2 cut(s)	668, 669
AsuC2I	CCSGG	2 cut(s)	696, 697
AsuHPI	GGTGA	2 cut(s)	523, 811
AvaI	CYCGRG	1 cut(s)	695
BaeGI	GKGCMC	1 cut(s)	672
BaeI	ACNNNNGTAYC	2 cut(s)	400, 433
BanII	GRGCYC	2 cut(s)	531, 672
BbrPI	CACGTG	2 cut(s)	631, 769
BbsI	GAAGAC	2 cut(s)	767, 921
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	950
BccI	CCATC	3 cut(s)	45, 323, 853
BceAI	ACGGC	5 cut(s)	280, 399, 427, 521, 552
BciT130I	CCWGG	1 cut(s)	659
BcnI	CCSGG	2 cut(s)	696, 697
BcoDI	GTCTC	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	627
BisI	GCNGC	6 cut(s)	139, 192, 219, 450, 910, 939
BlsI	GCNGC	6 cut(s)	140, 193, 220, 451, 911, 940
Bme1390I	CCNGG	3 cut(s)	659, 696, 697
BmeT110I	CYCGRG	1 cut(s)	695
BmgBI	CACGTC	3 cut(s)	493, 652, 720
BmgT120I	GGNCC	2 cut(s)	668, 669
BmiI	GGNNCC	2 cut(s)	670, 671
BmrFI	CCNGG	3 cut(s)	659, 696, 697
BmsI	GCATC	3 cut(s)	275, 313, 696
BpiI	GAAGAC	2 cut(s)	767, 921
BpuMI	CCSGG	2 cut(s)	696, 697
BsaAI	YACGTR	3 cut(s)	631, 769, 871
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	4 cut(s)	522, 537, 673, 695
BsaWI	WCCGGW	2 cut(s)	438, 571
Bsc4I	CCNNNNNNNGG	3 cut(s)	390, 677, 678
Bse118I	RCCGGY	1 cut(s)	438
BseBI	CCWGG	1 cut(s)	659
BseDI	CCNNGG	4 cut(s)	522, 537, 673, 695
BseGI	GGATG	4 cut(s)	37, 45, 155, 266
BseLI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
BseRI	GAGGAG	4 cut(s)	107, 245, 476, 751
BseSI	GKGCMC	1 cut(s)	672
BseX3I	CGGCCG	1 cut(s)	412
BseXI	GCAGC	1 cut(s)	950
BseYI	CCCAGC	2 cut(s)	604, 809
BsgI	GTGCAG	2 cut(s)	515, 596
Bsh1236I	CGCG	2 cut(s)	149, 692
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	4 cut(s)	86, 414, 670, 685
BshTI	ACCGGT	1 cut(s)	438
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	695
BsiSI	CCGG	4 cut(s)	439, 572, 686, 696
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	2 cut(s)	662, 805
BslI	CCNNNNNNNGG	3 cut(s)	390, 677, 678
BsmAI	GTCTC	1 cut(s)	848
BsmBI	CGTCTC	1 cut(s)	848
BsmFI	GGGAC	2 cut(s)	662, 805
BsnI	GGCC	4 cut(s)	86, 414, 670, 685
BsoBI	CYCGRG	1 cut(s)	695
Bsp120I	GGGCCC	1 cut(s)	668
Bsp1286I	GDGCHC	2 cut(s)	531, 672
Bsp1407I	TGTACA	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	27, 609, 654
BspANI	GGCC	4 cut(s)	86, 414, 670, 685
BspFNI	CGCG	2 cut(s)	149, 692
BspLI	GGNNCC	2 cut(s)	670, 671
BspMI	ACCTGC	1 cut(s)	627
BspPI	GGATC	3 cut(s)	22, 617, 649
BspQI	GCTCTTC	1 cut(s)	593
BsrFI	RCCGGY	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	423
BssAI	RCCGGY	1 cut(s)	438
BssECI	CCNNGG	4 cut(s)	522, 537, 673, 695
BssMI	GATC	3 cut(s)	27, 609, 654
BssNI	GRCGYC	1 cut(s)	483
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	659
Bst4CI	ACNGT	3 cut(s)	241, 390, 421
Bst6I	CTCTTC	1 cut(s)	593
BstACI	GRCGYC	1 cut(s)	483
BstAPI	GCANNNNNTGC	2 cut(s)	564, 583
BstAUI	TGTACA	1 cut(s)	423
BstBAI	YACGTR	3 cut(s)	631, 769, 871
BstC8I	GCNNGC	2 cut(s)	602, 732
BstDSI	CCRYGG	2 cut(s)	537, 673
BstF5I	GGATG	4 cut(s)	37, 45, 155, 266
BstFNI	CGCG	2 cut(s)	149, 692
BstHHI	GCGC	2 cut(s)	328, 694
BstKTI	GATC	3 cut(s)	30, 612, 657
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	3 cut(s)	27, 609, 654
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	5 cut(s)	564, 583, 691, 747, 915
BstNI	CCWGG	1 cut(s)	659
BstSCI	CCNGG	3 cut(s)	657, 694, 695
BstSLI	GKGCMC	1 cut(s)	672
BstUI	CGCG	2 cut(s)	149, 692
BstV1I	GCAGC	1 cut(s)	950
BstV2I	GAAGAC	2 cut(s)	767, 921
BstZI	CGGCCG	1 cut(s)	412
BsuRI	GGCC	4 cut(s)	86, 414, 670, 685
BtgI	CCRYGG	2 cut(s)	537, 673
BtgZI	GCGATG	1 cut(s)	517
BtrI	CACGTC	3 cut(s)	493, 652, 720
BtsCI	GGATG	4 cut(s)	37, 45, 155, 266
BveI	ACCTGC	1 cut(s)	627
Cac8I	GCNNGC	2 cut(s)	602, 732
CaiI	CAGNNNCTG	1 cut(s)	583
CfoI	GCGC	2 cut(s)	328, 694
Cfr10I	RCCGGY	1 cut(s)	438
Cfr13I	GGNCC	2 cut(s)	668, 669
Cfr9I	CCCGGG	1 cut(s)	695
CseI	GACGC	3 cut(s)	491, 698, 772
Csp6I	GTAC	7 cut(s)	151, 298, 417, 424, 442, 499, 634
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	4 cut(s)	91, 348, 457, 779
CviQI	GTAC	7 cut(s)	151, 298, 417, 424, 442, 499, 634
DpnI	GATC	3 cut(s)	29, 611, 656
DpnII	GATC	3 cut(s)	27, 609, 654
EaeI	YGGCCR	2 cut(s)	412, 683
EagI	CGGCCG	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	593
EarI	CTCTTC	1 cut(s)	593
Ecl136II	GAGCTC	1 cut(s)	529
EclXI	CGGCCG	1 cut(s)	412
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	2 cut(s)	531, 672
Eco52I	CGGCCG	1 cut(s)	412
Eco53kI	GAGCTC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	951
Eco72I	CACGTG	2 cut(s)	631, 769
Eco88I	CYCGRG	1 cut(s)	695
EcoICRI	GAGCTC	1 cut(s)	529
EcoO109I	RGGNCCY	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	657
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	2 cut(s)	531, 672
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	848
FaeI	CATG	4 cut(s)	94, 351, 460, 782
FaiI	YATR	6 cut(s)	76, 92, 145, 349, 458, 780
FaqI	GGGAC	2 cut(s)	662, 805
FatI	CATG	4 cut(s)	90, 347, 456, 778
FauI	CCCGC	3 cut(s)	196, 671, 743
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	6 cut(s)	139, 192, 219, 450, 910, 939
FokI	GGATG	4 cut(s)	24, 32, 142, 253
FriOI	GRGCYC	2 cut(s)	531, 672
Fsp4HI	GCNGC	6 cut(s)	139, 192, 219, 450, 910, 939
GlaI	GCGC	2 cut(s)	327, 693
GluI	GCNGC	6 cut(s)	139, 192, 219, 450, 910, 939
GsaI	CCCAGC	2 cut(s)	608, 813
HaeIII	GGCC	4 cut(s)	86, 414, 670, 685
HapII	CCGG	4 cut(s)	439, 572, 686, 696
HgaI	GACGC	3 cut(s)	491, 698, 772
HhaI	GCGC	2 cut(s)	328, 694
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	94, 351, 460, 782
Hin6I	GCGC	2 cut(s)	326, 692
HinP1I	GCGC	2 cut(s)	326, 692
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	4 cut(s)	439, 572, 686, 696
HphI	GGTGA	2 cut(s)	523, 811
Hpy166II	GTNNAC	6 cut(s)	102, 130, 424, 501, 634, 664
Hpy188I	TCNGA	3 cut(s)	322, 332, 595
Hpy188III	TCNNGA	1 cut(s)	830
Hpy8I	GTNNAC	6 cut(s)	102, 130, 424, 501, 634, 664
Hpy99I	CGWCG	5 cut(s)	434, 485, 494, 724, 853
HpyAV	CCTTC	5 cut(s)	41, 97, 121, 508, 739
HpyCH4III	ACNGT	3 cut(s)	241, 390, 421
HpyCH4IV	ACGT	7 cut(s)	284, 492, 630, 651, 719, 768, 870
HpyCH4V	TGCA	5 cut(s)	351, 496, 577, 600, 778
HpyF10VI	GCNNNNNNNGC	5 cut(s)	564, 583, 691, 747, 915
HpySE526I	ACGT	7 cut(s)	284, 492, 630, 651, 719, 768, 870
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	94, 351, 460, 782
HspAI	GCGC	2 cut(s)	326, 692
Kzo9I	GATC	3 cut(s)	27, 609, 654
LguI	GCTCTTC	1 cut(s)	593
LmnI	GCTCC	5 cut(s)	234, 333, 344, 526, 738
Lsp1109I	GCAGC	1 cut(s)	950
LweI	GCATC	3 cut(s)	275, 313, 696
MaeII	ACGT	7 cut(s)	284, 492, 630, 651, 719, 768, 870
MalI	GATC	3 cut(s)	29, 611, 656
MboI	GATC	3 cut(s)	27, 609, 654
MboII	GAAGA	8 cut(s)	16, 580, 772, 921, 942, 951, 954, 957
MhlI	GDGCHC	2 cut(s)	531, 672
MluCI	AATT	1 cut(s)	835
MluI	ACGCGT	1 cut(s)	147
MmeI	TCCRAC	3 cut(s)	90, 300, 855
MseI	TTAA	1 cut(s)	979
MslI	CAYNNNNRTG	1 cut(s)	536
MspI	CCGG	4 cut(s)	439, 572, 686, 696
MspR9I	CCNGG	3 cut(s)	659, 696, 697
MvaI	CCWGG	1 cut(s)	659
MvnI	CGCG	2 cut(s)	149, 692
MwoI	GCNNNNNNNGC	5 cut(s)	564, 583, 691, 747, 915
NciI	CCSGG	2 cut(s)	696, 697
NdeII	GATC	3 cut(s)	27, 609, 654
NlaIII	CATG	4 cut(s)	94, 351, 460, 782
NlaIV	GGNNCC	2 cut(s)	670, 671
PciSI	GCTCTTC	1 cut(s)	593
PcsI	WCGNNNNNNNCGW	4 cut(s)	417, 486, 489, 648
PfeI	GAWTC	1 cut(s)	580
Pfl23II	CGTACG	1 cut(s)	297
PflFI	GACNNNGTC	1 cut(s)	925
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	6 cut(s)	140, 193, 220, 451, 911, 940
PmaCI	CACGTG	2 cut(s)	631, 769
PmlI	CACGTG	2 cut(s)	631, 769
Ppu21I	YACGTR	3 cut(s)	631, 769, 871
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	657
PspCI	CACGTG	2 cut(s)	631, 769
PspFI	CCCAGC	2 cut(s)	604, 809
PspGI	CCWGG	1 cut(s)	657
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	670, 671
PspOMI	GGGCCC	1 cut(s)	668
PspPI	GGNCC	2 cut(s)	668, 669
PsrI	GAACNNNNNNTAC	2 cut(s)	428, 460
PstNI	CAGNNNCTG	1 cut(s)	583
PsyI	GACNNNGTC	1 cut(s)	925
RsaI	GTAC	7 cut(s)	152, 299, 418, 425, 443, 500, 635
RsaNI	GTAC	7 cut(s)	151, 298, 417, 424, 442, 499, 634
RseI	CAYNNNNRTG	1 cut(s)	536
SacI	GAGCTC	1 cut(s)	531
SapI	GCTCTTC	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	979
SatI	GCNGC	6 cut(s)	139, 192, 219, 450, 910, 939
Sau3AI	GATC	3 cut(s)	27, 609, 654
Sau96I	GGNCC	2 cut(s)	668, 669
ScrFI	CCNGG	3 cut(s)	659, 696, 697
SduI	GDGCHC	2 cut(s)	531, 672
SfaNI	GCATC	3 cut(s)	275, 313, 696
SmaI	CCCGGG	1 cut(s)	697
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	1 cut(s)	835
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	3 cut(s)	657, 694, 695
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	241, 390, 421
TaiI	ACGT	7 cut(s)	287, 495, 633, 654, 722, 771, 873
TaqI	TCGA	3 cut(s)	429, 480, 642
TasI	AATT	1 cut(s)	835
TatI	WGTACW	2 cut(s)	423, 498
TauI	GCSGC	5 cut(s)	141, 194, 221, 452, 912
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	1 cut(s)	979
Tru9I	TTAA	1 cut(s)	979
TseI	GCWGC	1 cut(s)	938
TspDTI	ATGAA	2 cut(s)	17, 79
TspGWI	ACGGA	2 cut(s)	809, 866
TspMI	CCCGGG	1 cut(s)	695
Tth111I	GACNNNGTC	1 cut(s)	925
XapI	RAATTY	1 cut(s)	835
XmaI	CCCGGG	1 cut(s)	695
XmiI	GTMKAC	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.