Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014161

Physical Location & Seq

Genomic Coordinates Forward (+)

17753909 .. 17755050

Gene Structure 1142 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48041

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTCCTTGTCCACCCTCGCCTTTCTCCTCACAATCATTTACACCAGCGGATTGTATGCATATTCGACAGCAACTACAACCACCACCACAACCGCCAATATAGCCGCCGCCACTATAACCGCCACCAACGCCCCAATGCCGACCACCGTGATCAACACGCTCCTCCACTACGCGTCGAAATCAAACGACACGTTCAAAATGTCATACTCCGAGATCAAACCCATCTCGGACGTACTGAGAAAATGCTCCTCCCCTTGTAACTTCCTGATCTTCGGCCTCACCCACGAGACCCTTCTCTGGAAAGCCCTAAACCACAACGGCCGGACCGTCTTCATCGACGAGAACCGCTACTACGCCGCCTACATGGAAGAAAAGCACCCGGAAATCGACGCCTACGACGTTCAATACACCACCAAGACTAGAGAGATGTCCGAGTTGATCAAAGTCGCCAAAGAACAGATCAGAAACGAGTGCCGGCCGGTTCAGAATCTGTTGTTCTCGGAATGCAAGCTCGGAATCAATGATCTTCCGAACCATGTCTACGAAGTCGACTGGGACGTGATCTTGATCGACGGGCCCAGAGGAGACTGGCCCGACTCGCCGGGCCGCATCTCTCCCATTTTCACCTCCGGCGTTCTGGCCCGGAGCAAAAAGGGCGGGAGCGGGAAGACACACGTGTTCGTTCATGACTTCAGGAGGGACGTGGAGAGGGTCTGTGGGGATGAGTTTCTGTGCAGAGAAAATTTGGTGGAGGAGAGTGAGACGCTGGGGCATTATGTGATGGAGAGGATGGAGGAGACCAGCTTCCAGTTCTGCCGCAACAACAACCGTGAAGTGACGTCATCAACGTCGGCGGCGGCAAATAATTCTTCTTCTTCTTCTTCGTCCTTGTCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009832 GO:0009834 GO:0009987 GO:0010383 GO:0010410 GO:0012505 GO:0016051 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045491 GO:0045492 GO:0070589 GO:0070592 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Polysacc_synt_4

Protein Analysis

299

Amino Acids

33.57

Weight (kDa)

5.66

Isoelectric Point (pI)

50.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IRX15_IRX15L_GXM	PF21729	71 - 259	1.1e-81	IRX15/IRX15L/GXM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50220 AT5G67210
fragaria_vesca	FvH4_1g16440
malus_domestica	MD02G1177100.v1.1 MD15G1287000.v1.1
prunus_persica	Prupe.6G230900_v2.0.a1
pyrus_communis	pycom02g14310 pycom15g25040
rosa_chinensis	RchiOBHm_Chr2g0106321
rosa_laevigata	RLG00000017488
rosa_roxburghii	Rroxscaffold_2G00137280
rosa_rugosa	Rorug02G0134600
rosa_samantha	Rh2AG185700 Rh2BG196000 Rh2CG190800 Rh2DG191800
rosa_wichuraiana	Rw2G014480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	842
AccBSI	CCGCTC	1 cut(s)	663
AccI	GTMKAC	2 cut(s)	540, 549
AccII	CGCG	1 cut(s)	173
AcoI	YGGCCR	2 cut(s)	319, 476
AcsI	RAATTY	1 cut(s)	742
AcuI	CTGAAG	1 cut(s)	676
AcvI	CACGTG	1 cut(s)	676
AcyI	GRCGYC	2 cut(s)	390, 839
AfaI	GTAC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	297
AflIII	ACRYGT	4 cut(s)	171, 189, 673, 675
AgsI	TTSAA	2 cut(s)	196, 404
AjiI	CACGTC	2 cut(s)	559, 703
AluBI	AGCT	2 cut(s)	511, 804
AluI	AGCT	2 cut(s)	511, 804
Alw26I	GTCTC	4 cut(s)	281, 579, 755, 791
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	7 cut(s)	274, 319, 476, 575, 590, 604, 639
ApaI	GGGCCC	1 cut(s)	579
ApoI	RAATTY	1 cut(s)	742
AspS9I	GGNCC	6 cut(s)	324, 575, 576, 591, 604, 640
AsuC2I	CCSGG	3 cut(s)	380, 603, 643
AsuHPI	GGTGA	2 cut(s)	271, 616
AvaII	GGWCC	1 cut(s)	324
BaeGI	GKGCMC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	579
BauI	CACGAG	1 cut(s)	284
BbrPI	CACGTG	1 cut(s)	676
BbsI	GAAGAC	2 cut(s)	322, 674
BccI	CCATC	3 cut(s)	230, 775, 784
BceAI	ACGGC	1 cut(s)	334
BclI	TGATCA	2 cut(s)	150, 438
BcnI	CCSGG	3 cut(s)	380, 603, 643
BcoDI	GTCTC	4 cut(s)	281, 579, 755, 791
BfaI	CTAG	1 cut(s)	420
BisI	GCNGC	7 cut(s)	105, 108, 357, 607, 817, 855, 858
BlsI	GCNGC	7 cut(s)	106, 109, 358, 608, 818, 856, 859
Bme1390I	CCNGG	3 cut(s)	380, 603, 643
Bme18I	GGWCC	1 cut(s)	324
BmgBI	CACGTC	2 cut(s)	559, 703
BmgT120I	GGNCC	6 cut(s)	324, 575, 576, 591, 604, 640
BmiI	GGNNCC	1 cut(s)	577
BmrFI	CCNGG	3 cut(s)	380, 603, 643
BmrI	ACTGGG	1 cut(s)	562
BmsI	GCATC	1 cut(s)	618
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	2 cut(s)	322, 674
BpuMI	CCSGG	3 cut(s)	380, 603, 643
BsaAI	YACGTR	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	566
BsaHI	GRCGYC	2 cut(s)	390, 839
BsaI	GGTCTC	2 cut(s)	281, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	297
Bse118I	RCCGGY	2 cut(s)	474, 478
Bse1I	ACTGG	3 cut(s)	557, 593, 808
Bse8I	GATNNNNATC	1 cut(s)	566
BseGI	GGATG	2 cut(s)	727, 795
BseJI	GATNNNNATC	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	3 cut(s)	557, 593, 808
BseRI	GAGGAG	6 cut(s)	17, 152, 238, 597, 767, 809
BseSI	GKGCMC	1 cut(s)	579
BseX3I	CGGCCG	2 cut(s)	319, 476
BseYI	CCCAGC	1 cut(s)	766
BsgI	GTGCAG	1 cut(s)	754
Bsh1236I	CGCG	1 cut(s)	173
Bsh1285I	CGRYCG	2 cut(s)	322, 479
BshFI	GGCC	7 cut(s)	276, 321, 478, 577, 592, 606, 641
BsiEI	CGRYCG	2 cut(s)	322, 479
BsiSI	CCGG	7 cut(s)	322, 380, 475, 479, 602, 630, 643
BslFI	GGGAC	2 cut(s)	569, 713
BslI	CCNNNNNNNGG	1 cut(s)	297
BsmAI	GTCTC	4 cut(s)	281, 579, 755, 791
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	569, 713
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	7 cut(s)	276, 321, 478, 577, 592, 606, 641
Bso31I	GGTCTC	2 cut(s)	281, 791
Bsp120I	GGGCCC	1 cut(s)	575
Bsp1286I	GDGCHC	1 cut(s)	579
Bsp143I	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
BspANI	GGCC	7 cut(s)	276, 321, 478, 577, 592, 606, 641
BspCNI	CTCAG	1 cut(s)	228
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	1 cut(s)	577
BspTNI	GGTCTC	2 cut(s)	281, 791
BsrBI	CCGCTC	1 cut(s)	663
BsrFI	RCCGGY	2 cut(s)	474, 478
BsrI	ACTGG	3 cut(s)	557, 593, 808
BssAI	RCCGGY	2 cut(s)	474, 478
BssMI	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
BssNI	GRCGYC	2 cut(s)	390, 839
BssSI	CACGAG	1 cut(s)	284
Bst2BI	CACGAG	1 cut(s)	284
Bst4CI	ACNGT	3 cut(s)	148, 328, 830
BstACI	GRCGYC	2 cut(s)	390, 839
BstBAI	YACGTR	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	476, 509
BstDEI	CTNAG	2 cut(s)	236, 894
BstF5I	GGATG	2 cut(s)	727, 795
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	8 cut(s)	153, 216, 270, 441, 462, 526, 564, 570
BstMAI	GTCTC	4 cut(s)	281, 579, 755, 791
BstMBI	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
BstMCI	CGRYCG	2 cut(s)	322, 479
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 128, 598, 654
BstSCI	CCNGG	3 cut(s)	378, 601, 641
BstSLI	GKGCMC	1 cut(s)	579
BstUI	CGCG	1 cut(s)	173
BstV2I	GAAGAC	2 cut(s)	322, 674
BstZI	CGGCCG	2 cut(s)	319, 476
BsuRI	GGCC	7 cut(s)	276, 321, 478, 577, 592, 606, 641
BtrI	CACGTC	2 cut(s)	559, 703
BtsCI	GGATG	2 cut(s)	727, 795
Cac8I	GCNNGC	2 cut(s)	476, 509
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	1 cut(s)	685
Cfr10I	RCCGGY	2 cut(s)	474, 478
Cfr13I	GGNCC	6 cut(s)	324, 575, 576, 591, 604, 640
CpoI	CGGWCCG	1 cut(s)	324
CseI	GACGC	3 cut(s)	162, 398, 772
Csp6I	GTAC	1 cut(s)	233
CspI	CGGWCCG	1 cut(s)	324
CviAII	CATG	3 cut(s)	364, 536, 686
CviQI	GTAC	1 cut(s)	233
DdeI	CTNAG	2 cut(s)	236, 894
DpnI	GATC	8 cut(s)	152, 215, 269, 440, 461, 525, 563, 569
DpnII	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
EaeI	YGGCCR	2 cut(s)	319, 476
EagI	CGGCCG	2 cut(s)	319, 476
EclXI	CGGCCG	2 cut(s)	319, 476
Eco24I	GRGCYC	1 cut(s)	579
Eco31I	GGTCTC	2 cut(s)	281, 791
Eco47I	GGWCC	1 cut(s)	324
Eco52I	CGGCCG	2 cut(s)	319, 476
Eco57I	CTGAAG	1 cut(s)	676
Eco72I	CACGTG	1 cut(s)	676
EcoT22I	ATGCAT	1 cut(s)	61
EcoT38I	GRGCYC	1 cut(s)	579
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	3 cut(s)	367, 539, 689
FaiI	YATR	9 cut(s)	57, 61, 101, 116, 205, 365, 537, 687, 777
FaqI	GGGAC	2 cut(s)	569, 713
FatI	CATG	3 cut(s)	363, 535, 685
FauI	CCCGC	2 cut(s)	650, 656
FbaI	TGATCA	2 cut(s)	150, 438
FblI	GTMKAC	2 cut(s)	540, 549
Fnu4HI	GCNGC	7 cut(s)	105, 108, 357, 607, 817, 855, 858
FokI	GGATG	2 cut(s)	734, 802
FriOI	GRGCYC	1 cut(s)	579
Fsp4HI	GCNGC	7 cut(s)	105, 108, 357, 607, 817, 855, 858
FspBI	CTAG	1 cut(s)	420
GluI	GCNGC	7 cut(s)	105, 108, 357, 607, 817, 855, 858
GsaI	CCCAGC	1 cut(s)	770
HaeIII	GGCC	7 cut(s)	276, 321, 478, 577, 592, 606, 641
HapII	CCGG	7 cut(s)	322, 380, 475, 479, 602, 630, 643
HgaI	GACGC	3 cut(s)	162, 398, 772
Hin1I	GRCGYC	2 cut(s)	390, 839
Hin1II	CATG	3 cut(s)	367, 539, 689
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HinfI	GANTC	3 cut(s)	487, 516, 596
HpaII	CCGG	7 cut(s)	322, 380, 475, 479, 602, 630, 643
HphI	GGTGA	2 cut(s)	271, 616
Hpy166II	GTNNAC	3 cut(s)	12, 541, 550
Hpy188I	TCNGA	8 cut(s)	211, 229, 433, 464, 486, 502, 515, 531
Hpy188III	TCNNGA	5 cut(s)	265, 298, 565, 686, 694
Hpy8I	GTNNAC	3 cut(s)	12, 541, 550
Hpy99I	CGWCG	6 cut(s)	178, 341, 392, 401, 575, 853
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	3 cut(s)	148, 328, 830
HpyCH4IV	ACGT	8 cut(s)	191, 231, 399, 558, 675, 702, 839, 848
HpyCH4V	TGCA	3 cut(s)	59, 507, 735
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 128, 598, 654
HpyF3I	CTNAG	2 cut(s)	236, 894
HpySE526I	ACGT	8 cut(s)	191, 231, 399, 558, 675, 702, 839, 848
Hsp92I	GRCGYC	2 cut(s)	390, 839
Hsp92II	CATG	3 cut(s)	367, 539, 689
KroI	GCCGGC	1 cut(s)	474
KroNI	GCCGGC	1 cut(s)	476
Ksp22I	TGATCA	2 cut(s)	150, 438
Kzo9I	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
LmnI	GCTCC	4 cut(s)	165, 251, 645, 660
LweI	GCATC	1 cut(s)	618
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	8 cut(s)	191, 231, 399, 558, 675, 702, 839, 848
MaeIII	GTNAC	2 cut(s)	257, 835
MalI	GATC	8 cut(s)	152, 215, 269, 440, 461, 525, 563, 569
MbiI	CCGCTC	1 cut(s)	663
MboI	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
MhlI	GDGCHC	1 cut(s)	579
MluCI	AATT	2 cut(s)	742, 865
MluI	ACGCGT	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	590
Mph1103I	ATGCAT	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	48
MspI	CCGG	7 cut(s)	322, 380, 475, 479, 602, 630, 643
MspR9I	CCNGG	3 cut(s)	380, 603, 643
Mva1269I	GAATGC	1 cut(s)	509
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	4 cut(s)	101, 128, 598, 654
NaeI	GCCGGC	1 cut(s)	476
NciI	CCSGG	3 cut(s)	380, 603, 643
NdeII	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
NgoMIV	GCCGGC	1 cut(s)	474
NlaIII	CATG	3 cut(s)	367, 539, 689
NlaIV	GGNNCC	1 cut(s)	577
NmuCI	GTSAC	1 cut(s)	835
NsiI	ATGCAT	1 cut(s)	61
PagI	TCATGA	1 cut(s)	685
PcsI	WCGNNNNNNNCGW	5 cut(s)	324, 393, 396, 555, 845
PctI	GAATGC	1 cut(s)	509
PdiI	GCCGGC	1 cut(s)	476
PfeI	GAWTC	2 cut(s)	487, 516
PkrI	GCNGC	7 cut(s)	106, 109, 358, 608, 818, 856, 859
PleI	GAGTC	1 cut(s)	590
PmaCI	CACGTG	1 cut(s)	676
PmlI	CACGTG	1 cut(s)	676
PpsI	GAGTC	1 cut(s)	590
Ppu21I	YACGTR	1 cut(s)	676
PspCI	CACGTG	1 cut(s)	676
PspFI	CCCAGC	1 cut(s)	766
PspN4I	GGNNCC	1 cut(s)	577
PspOMI	GGGCCC	1 cut(s)	575
PspPI	GGNCC	6 cut(s)	324, 575, 576, 591, 604, 640
PsrI	GAACNNNNNNTAC	4 cut(s)	335, 367, 524, 556
PstNI	CAGNNNCTG	1 cut(s)	490
RsaI	GTAC	1 cut(s)	234
RsaNI	GTAC	1 cut(s)	233
Rsr2I	CGGWCCG	1 cut(s)	324
RsrII	CGGWCCG	1 cut(s)	324
SalI	GTCGAC	1 cut(s)	548
SatI	GCNGC	7 cut(s)	105, 108, 357, 607, 817, 855, 858
Sau3AI	GATC	8 cut(s)	150, 213, 267, 438, 459, 523, 561, 567
Sau96I	GGNCC	6 cut(s)	324, 575, 576, 591, 604, 640
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	380, 603, 643
SduI	GDGCHC	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	618
SinI	GGWCC	1 cut(s)	324
Sse9I	AATT	2 cut(s)	742, 865
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	3 cut(s)	378, 601, 641
TaaI	ACNGT	3 cut(s)	148, 328, 830
TaiI	ACGT	8 cut(s)	194, 234, 402, 561, 678, 705, 842, 851
TaqI	TCGA	6 cut(s)	65, 176, 336, 387, 549, 570
TasI	AATT	2 cut(s)	742, 865
TauI	GCSGC	7 cut(s)	107, 110, 359, 609, 819, 857, 860
TfiI	GAWTC	2 cut(s)	487, 516
TseFI	GTSAC	1 cut(s)	835
Tsp45I	GTSAC	1 cut(s)	835
TspDTI	ATGAA	2 cut(s)	322, 674
VpaK11BI	GGWCC	1 cut(s)	324
XapI	RAATTY	1 cut(s)	742
XmiI	GTMKAC	2 cut(s)	540, 549
XspI	CTAG	1 cut(s)	420
ZraI	GACGTC	1 cut(s)	840
Zsp2I	ATGCAT	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.